Multi-view stacking is a framework for combining information from different views (i.e. different feature sets) describing the same set of objects. In this framework, a base-learner algorithm is trained on each view separately, and their predictions are then combined by a meta-learner algorithm. In a previous study, stacked penalized logistic regression, a special case of multi-view stacking, has been shown to be useful in identifying which views are most important for prediction. In this article we expand this research by considering seven different algorithms to use as the meta-learner, and evaluating their view selection and classification performance in simulations and two applications on real gene-expression data sets. Our results suggest that if both view selection and classification accuracy are important to the research at hand, then the nonnegative lasso, nonnegative adaptive lasso and nonnegative elastic net are suitable meta-learners. Exactly which among these three is to be preferred depends on the research context. The remaining four meta-learners, namely nonnegative ridge regression, nonnegative forward selection, stability selection and the interpolating predictor, show little advantages in order to be preferred over the other three.
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Dual-path is a popular architecture for speech separation models (e.g. Sepformer) which splits long sequences into overlapping chunks for its intra- and inter-blocks that separately model intra-chunk local features and inter-chunk global relationships. However, it has been found that inter-blocks, which comprise half a dual-path model's parameters, contribute minimally to performance. Thus, we propose the Single-Path Global Modulation (SPGM) block to replace inter-blocks. SPGM is named after its structure consisting of a parameter-free global pooling module followed by a modulation module comprising only 2% of the model's total parameters. The SPGM block allows all transformer layers in the model to be dedicated to local feature modelling, making the overall model single-path. SPGM achieves 22.1 dB SI-SDRi on WSJ0-2Mix and 20.4 dB SI-SDRi on Libri2Mix, exceeding the performance of Sepformer by 0.5 dB and 0.3 dB respectively and matches the performance of recent SOTA models with up to 8 times fewer parameters. Model and weights are available at huggingface.co/yipjiaqi/spgm
Change-point detection, detecting an abrupt change in the data distribution from sequential data, is a fundamental problem in statistics and machine learning. CUSUM is a popular statistical method for online change-point detection due to its efficiency from recursive computation and constant memory requirement, and it enjoys statistical optimality. CUSUM requires knowing the precise pre- and post-change distribution. However, post-change distribution is usually unknown a priori since it represents anomaly and novelty. Classic CUSUM can perform poorly when there is a model mismatch with actual data. While likelihood ratio-based methods encounter challenges facing high dimensional data, neural networks have become an emerging tool for change-point detection with computational efficiency and scalability. In this paper, we introduce a neural network CUSUM (NN-CUSUM) for online change-point detection. We also present a general theoretical condition when the trained neural networks can perform change-point detection and what losses can achieve our goal. We further extend our analysis by combining it with the Neural Tangent Kernel theory to establish learning guarantees for the standard performance metrics, including the average run length (ARL) and expected detection delay (EDD). The strong performance of NN-CUSUM is demonstrated in detecting change-point in high-dimensional data using both synthetic and real-world data.
This article is concerned with the multilevel Monte Carlo (MLMC) methods for approximating expectations of some functions of the solution to the Heston 3/2-model from mathematical finance, which takes values in $(0, \infty)$ and possesses superlinearly growing drift and diffusion coefficients. To discretize the SDE model, a new Milstein-type scheme is proposed to produce independent sample paths. The proposed scheme can be explicitly solved and is positivity-preserving unconditionally, i.e., for any time step-size $h>0$. This positivity-preserving property for large discretization time steps is particularly desirable in the MLMC setting. Furthermore, a mean-square convergence rate of order one is proved in the non-globally Lipschitz regime, which is not trivial, as the diffusion coefficient grows super-linearly. The obtained order-one convergence in turn promises the desired relevant variance of the multilevel estimator and justifies the optimal complexity $\mathcal{O}(\epsilon^{-2})$ for the MLMC approach, where $\epsilon > 0$ is the required target accuracy. Numerical experiments are finally reported to confirm the theoretical findings.
The sparsity-ranked lasso (SRL) has been developed for model selection and estimation in the presence of interactions and polynomials. The main tenet of the SRL is that an algorithm should be more skeptical of higher-order polynomials and interactions *a priori* compared to main effects, and hence the inclusion of these more complex terms should require a higher level of evidence. In time series, the same idea of ranked prior skepticism can be applied to the possibly seasonal autoregressive (AR) structure of the series during the model fitting process, becoming especially useful in settings with uncertain or multiple modes of seasonality. The SRL can naturally incorporate exogenous variables, with streamlined options for inference and/or feature selection. The fitting process is quick even for large series with a high-dimensional feature set. In this work, we discuss both the formulation of this procedure and the software we have developed for its implementation via the **fastTS** R package. We explore the performance of our SRL-based approach in a novel application involving the autoregressive modeling of hourly emergency room arrivals at the University of Iowa Hospitals and Clinics. We find that the SRL is considerably faster than its competitors, while producing more accurate predictions.
Existing survival models either do not scale to high dimensional and multi-modal data or are difficult to interpret. In this study, we present a supervised topic model called MixEHR-SurG to simultaneously integrate heterogeneous EHR data and model survival hazard. Our contributions are three-folds: (1) integrating EHR topic inference with Cox proportional hazards likelihood; (2) integrating patient-specific topic hyperparameters using the PheCode concepts such that each topic can be identified with exactly one PheCode-associated phenotype; (3) multi-modal survival topic inference. This leads to a highly interpretable survival topic model that can infer PheCode-specific phenotype topics associated with patient mortality. We evaluated MixEHR-SurG using a simulated dataset and two real-world EHR datasets: the Quebec Congenital Heart Disease (CHD) data consisting of 8,211 subjects with 75,187 outpatient claim records of 1,767 unique ICD codes; the MIMIC-III consisting of 1,458 subjects with multi-modal EHR records. Compared to the baselines, MixEHR-SurG achieved a superior dynamic AUROC for mortality prediction, with a mean AUROC score of 0.89 in the simulation dataset and a mean AUROC of 0.645 on the CHD dataset. Qualitatively, MixEHR-SurG associates severe cardiac conditions with high mortality risk among the CHD patients after the first heart failure hospitalization and critical brain injuries with increased mortality among the MIMIC- III patients after their ICU discharge. Together, the integration of the Cox proportional hazards model and EHR topic inference in MixEHR-SurG not only leads to competitive mortality prediction but also meaningful phenotype topics for in-depth survival analysis. The software is available at GitHub: //github.com/li-lab-mcgill/MixEHR-SurG.
An integrated Equation of State (EOS) and strength/pore-crush/damage model framework is provided for modeling near to source (near-field) ground-shock response, where large deformations and pressures necessitate coupling EOS with pressure-dependent plastic yield and damage. Nonlinear pressure-dependence of strength up to high-pressures is combined with a Modified Cam-Clay-like cap-plasticity model in a way to allow degradation of strength from pore-crush damage, what we call the "Yp-Cap" model. Nonlinear hardening under compaction allows modeling the crush-out of pores in combination with a fully saturated EOS, i.e., for modeling partially saturated ground-shock response, where air-filled voids crush. Attention is given to algorithmic clarity and efficiency of the provided model, and the model is employed in example numerical simulations, including finite element simulations of underground explosions to exemplify its robustness and utility.
Charts, figures, and text derived from data play an important role in decision making, from data-driven policy development to day-to-day choices informed by online articles. Making sense of, or fact-checking, outputs means understanding how they relate to the underlying data. Even for domain experts with access to the source code and data sets, this poses a significant challenge. In this paper we introduce a new program analysis framework which supports interactive exploration of fine-grained I/O relationships directly through computed outputs, making use of dynamic dependence graphs. Our main contribution is a novel notion in data provenance which we call related inputs, a relation of mutual relevance or "cognacy" which arises between inputs when they contribute to common features of the output. Queries of this form allow readers to ask questions like "What outputs use this data element, and what other data elements are used along with it?". We show how Jonsson and Tarski's concept of conjugate operators on Boolean algebras appropriately characterises the notion of cognacy in a dependence graph, and give a procedure for computing related inputs over such a graph.
Robust Markov Decision Processes (RMDPs) are a widely used framework for sequential decision-making under parameter uncertainty. RMDPs have been extensively studied when the objective is to maximize the discounted return, but little is known for average optimality (optimizing the long-run average of the rewards obtained over time) and Blackwell optimality (remaining discount optimal for all discount factors sufficiently close to 1). In this paper, we prove several foundational results for RMDPs beyond the discounted return. We show that average optimal policies can be chosen stationary and deterministic for sa-rectangular RMDPs but, perhaps surprisingly, that history-dependent (Markovian) policies strictly outperform stationary policies for average optimality in s-rectangular RMDPs. We also study Blackwell optimality for sa-rectangular RMDPs, where we show that {\em approximate} Blackwell optimal policies always exist, although Blackwell optimal policies may not exist. We also provide a sufficient condition for their existence, which encompasses virtually any examples from the literature. We then discuss the connection between average and Blackwell optimality, and we describe several algorithms to compute the optimal average return. Interestingly, our approach leverages the connections between RMDPs and stochastic games.
One of the main challenges for interpreting black-box models is the ability to uniquely decompose square-integrable functions of non-independent random inputs into a sum of functions of every possible subset of variables. However, dealing with dependencies among inputs can be complicated. We propose a novel framework to study this problem, linking three domains of mathematics: probability theory, functional analysis, and combinatorics. We show that, under two reasonable assumptions on the inputs (non-perfect functional dependence and non-degenerate stochastic dependence), it is always possible to decompose such a function uniquely. This generalizes the well-known Hoeffding decomposition. The elements of this decomposition can be expressed using oblique projections and allow for novel interpretability indices for evaluation and variance decomposition purposes. The properties of these novel indices are studied and discussed. This generalization offers a path towards a more precise uncertainty quantification, which can benefit sensitivity analysis and interpretability studies whenever the inputs are dependent. This decomposition is illustrated analytically, and the challenges for adopting these results in practice are discussed.
Recommender systems, a pivotal tool to alleviate the information overload problem, aim to predict user's preferred items from millions of candidates by analyzing observed user-item relations. As for tackling the sparsity and cold start problems encountered by recommender systems, uncovering hidden (indirect) user-item relations by employing side information and knowledge to enrich observed information for the recommendation has been proven promising recently; and its performance is largely determined by the scalability of recommendation models in the face of the high complexity and large scale of side information and knowledge. Making great strides towards efficiently utilizing complex and large-scale data, research into graph embedding techniques is a major topic. Equipping recommender systems with graph embedding techniques contributes to outperforming the conventional recommendation implementing directly based on graph topology analysis and has been widely studied these years. This article systematically retrospects graph embedding-based recommendation from embedding techniques for bipartite graphs, general graphs, and knowledge graphs, and proposes a general design pipeline of that. In addition, comparing several representative graph embedding-based recommendation models with the most common-used conventional recommendation models, on simulations, manifests that the conventional models overall outperform the graph embedding-based ones in predicting implicit user-item interactions, revealing the relative weakness of graph embedding-based recommendation in these tasks. To foster future research, this article proposes constructive suggestions on making a trade-off between graph embedding-based recommendation and the conventional recommendation in different tasks as well as some open questions.
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