Recently, there has been a growing interest in the relationships between unrooted and rooted phylogenetic networks. In this context, a natural question to ask is if an unrooted phylogenetic network U can be oriented as a rooted phylogenetic network such that the latter satisfies certain structural properties. In a recent preprint, Bulteau et al. claim that it is computational hard to decide if U has a funneled (resp. funneled tree-child) orientation, for when the internal vertices of U have degree at most 5. Unfortunately, the proof of their funneled tree-child result appears to be incorrect. In this paper, we present a corrected proof and show that hardness remains for other popular classes of rooted phylogenetic networks such as funneled normal and funneled reticulation-visible. Additionally, our results hold regardless of whether U is rooted at an existing vertex or by subdividing an edge with the root.
相關內容
Networking：IFIP International Conferences on Networking。
Explanation：國際網絡會議。
Publisher：IFIP。
SIT：
A unified Fourier slice method to derive ridgelet transform for a variety of depth-2 neural networks
To investigate neural network parameters, it is easier to study the distribution of parameters than to study the parameters in each neuron. The ridgelet transform is a pseudo-inverse operator that maps a given function $f$ to the parameter distribution $\gamma$ so that a network $\mathtt{NN}[\gamma]$ reproduces $f$, i.e. $\mathtt{NN}[\gamma]=f$. For depth-2 fully-connected networks on a Euclidean space, the ridgelet transform has been discovered up to the closed-form expression, thus we could describe how the parameters are distributed. However, for a variety of modern neural network architectures, the closed-form expression has not been known. In this paper, we explain a systematic method using Fourier expressions to derive ridgelet transforms for a variety of modern networks such as networks on finite fields $\mathbb{F}_p$, group convolutional networks on abstract Hilbert space $\mathcal{H}$, fully-connected networks on noncompact symmetric spaces $G/K$, and pooling layers, or the $d$-plane ridgelet transform.
Acoustic beamforming aims to focus acoustic signals to a specific direction and suppress undesirable interferences from other directions. Despite its flexibility and steerability, beamforming with circular microphone arrays suffers from significant performance degradation at frequencies corresponding to zeros of the Bessel functions. To conquer this constraint, baffled or concentric circular microphone arrays have been studied; however, the former needs a bulky baffle that interferes with the original sound field whereas the latter requires more microphones that increase the complexity and cost, both of which are undesirable in practical applications. To tackle this challenge, this paper proposes a circular microphone array equipped with virtual microphones, which resolves the performance degradation commonly associated with circular microphone arrays without resorting to physical modifications. The sound pressures at the virtual microphones are predicted from those measured by the physical microphones based on an acoustics-informed neural network, and then the sound pressures measured by the physical microphones and those predicted at the virtual microphones are integrated to design the beamformer. Experimental results demonstrate that the proposed approach not only eliminates the performance degradation but also suppresses spatial aliasing at high frequencies, thereby underscoring its promising potential.
We prove explicit uniform two-sided bounds for the phase functions of Bessel functions and of their derivatives. As a consequence, we obtain new enclosures for the zeros of Bessel functions and their derivatives in terms of inverse values of some elementary functions. These bounds are valid, with a few exceptions, for all zeros and all Bessel functions with non-negative indices. We provide numerical evidence showing that our bounds either improve or closely match the best previously known ones.
To achieve near-zero training error in a classification problem, the layers of a feed-forward network have to disentangle the manifolds of data points with different labels, to facilitate the discrimination. However, excessive class separation can bring to overfitting since good generalisation requires learning invariant features, which involve some level of entanglement. We report on numerical experiments showing how the optimisation dynamics finds representations that balance these opposing tendencies with a non-monotonic trend. After a fast segregation phase, a slower rearrangement (conserved across data sets and architectures) increases the class entanglement.The training error at the inversion is stable under subsampling, and across network initialisations and optimisers, which characterises it as a property solely of the data structure and (very weakly) of the architecture. The inversion is the manifestation of tradeoffs elicited by well-defined and maximally stable elements of the training set, coined ``stragglers'', particularly influential for generalisation.
Digital credentials represent a cornerstone of digital identity on the Internet. To achieve privacy, certain functionalities in credentials should be implemented. One is selective disclosure, which allows users to disclose only the claims or attributes they want. This paper presents a novel approach to selective disclosure that combines Merkle hash trees and Boneh-Lynn-Shacham (BLS) signatures. Combining these approaches, we achieve selective disclosure of claims in a single credential and creation of a verifiable presentation containing selectively disclosed claims from multiple credentials signed by different parties. Besides selective disclosure, we enable issuing credentials signed by multiple issuers using this approach.
In this paper I will develop a lambda-term calculus, lambda-2Int, for a bi-intuitionistic logic and discuss its implications for the notions of sense and denotation of derivations in a bilateralist setting. Thus, I will use the Curry-Howard correspondence, which has been well-established between the simply typed lambda-calculus and natural deduction systems for intuitionistic logic, and apply it to a bilateralist proof system displaying two derivability relations, one for proving and one for refuting. The basis will be the natural deduction system of Wansing's bi-intuitionistic logic 2Int, which I will turn into a term-annotated form. Therefore, we need a type theory that extends to a two-sorted typed lambda-calculus. I will present such a term-annotated proof system for 2Int and prove a Dualization Theorem relating proofs and refutations in this system. On the basis of these formal results I will argue that this gives us interesting insights into questions about sense and denotation as well as synonymy and identity of proofs from a bilateralist point of view.
Recently, partial Bayesian neural networks (pBNNs), which only consider a subset of the parameters to be stochastic, were shown to perform competitively with full Bayesian neural networks. However, pBNNs are often multi-modal in the latent variable space and thus challenging to approximate with parametric models. To address this problem, we propose an efficient sampling-based training strategy, wherein the training of a pBNN is formulated as simulating a Feynman--Kac model. We then describe variations of sequential Monte Carlo samplers that allow us to simultaneously estimate the parameters and the latent posterior distribution of this model at a tractable computational cost. Using various synthetic and real-world datasets we show that our proposed training scheme outperforms the state of the art in terms of predictive performance.
Autoencoders (AE) are simple yet powerful class of neural networks that compress data by projecting input into low-dimensional latent space (LS). Whereas LS is formed according to the loss function minimization during training, its properties and topology are not controlled directly. In this paper we focus on AE LS properties and propose two methods for obtaining LS with desired topology, called LS configuration. The proposed methods include loss configuration using a geometric loss term that acts directly in LS, and encoder configuration. We show that the former allows to reliably obtain LS with desired configuration by defining the positions and shapes of LS clusters for supervised AE (SAE). Knowing LS configuration allows to define similarity measure in LS to predict labels or estimate similarity for multiple inputs without using decoders or classifiers. We also show that this leads to more stable and interpretable training. We show that SAE trained for clothes texture classification using the proposed method generalizes well to unseen data from LIP, Market1501, and WildTrack datasets without fine-tuning, and even allows to evaluate similarity for unseen classes. We further illustrate the advantages of pre-configured LS similarity estimation with cross-dataset searches and text-based search using a text query without language models.
We hypothesize that due to the greedy nature of learning in multi-modal deep neural networks, these models tend to rely on just one modality while under-fitting the other modalities. Such behavior is counter-intuitive and hurts the models' generalization, as we observe empirically. To estimate the model's dependence on each modality, we compute the gain on the accuracy when the model has access to it in addition to another modality. We refer to this gain as the conditional utilization rate. In the experiments, we consistently observe an imbalance in conditional utilization rates between modalities, across multiple tasks and architectures. Since conditional utilization rate cannot be computed efficiently during training, we introduce a proxy for it based on the pace at which the model learns from each modality, which we refer to as the conditional learning speed. We propose an algorithm to balance the conditional learning speeds between modalities during training and demonstrate that it indeed addresses the issue of greedy learning. The proposed algorithm improves the model's generalization on three datasets: Colored MNIST, Princeton ModelNet40, and NVIDIA Dynamic Hand Gesture.
Recent advances in 3D fully convolutional networks (FCN) have made it feasible to produce dense voxel-wise predictions of volumetric images. In this work, we show that a multi-class 3D FCN trained on manually labeled CT scans of several anatomical structures (ranging from the large organs to thin vessels) can achieve competitive segmentation results, while avoiding the need for handcrafting features or training class-specific models. To this end, we propose a two-stage, coarse-to-fine approach that will first use a 3D FCN to roughly define a candidate region, which will then be used as input to a second 3D FCN. This reduces the number of voxels the second FCN has to classify to ~10% and allows it to focus on more detailed segmentation of the organs and vessels. We utilize training and validation sets consisting of 331 clinical CT images and test our models on a completely unseen data collection acquired at a different hospital that includes 150 CT scans, targeting three anatomical organs (liver, spleen, and pancreas). In challenging organs such as the pancreas, our cascaded approach improves the mean Dice score from 68.5 to 82.2%, achieving the highest reported average score on this dataset. We compare with a 2D FCN method on a separate dataset of 240 CT scans with 18 classes and achieve a significantly higher performance in small organs and vessels. Furthermore, we explore fine-tuning our models to different datasets. Our experiments illustrate the promise and robustness of current 3D FCN based semantic segmentation of medical images, achieving state-of-the-art results. Our code and trained models are available for download: //github.com/holgerroth/3Dunet_abdomen_cascade.
小貼士
登錄享
相關主題
注冊地址： 北京市海淀區羊坊店路18號2幢3層301-191