Conditional Neural Processes (CNP; Garnelo et al., 2018) are an attractive family of meta-learning models which produce well-calibrated predictions, enable fast inference at test time, and are trainable via a simple maximum likelihood procedure. A limitation of CNPs is their inability to model dependencies in the outputs. This significantly hurts predictive performance and renders it impossible to draw coherent function samples, which limits the applicability of CNPs in down-stream applications and decision making. Neural Processes (NPs; Garnelo et al., 2018) attempt to alleviate this issue by using latent variables, relying on these to model output dependencies, but introduces difficulties stemming from approximate inference. One recent alternative (Bruinsma et al.,2021), which we refer to as the FullConvGNP, models dependencies in the predictions while still being trainable via exact maximum-likelihood. Unfortunately, the FullConvGNP relies on expensive 2D-dimensional convolutions, which limit its applicability to only one-dimensional data. In this work, we present an alternative way to model output dependencies which also lends itself maximum likelihood training but, unlike the FullConvGNP, can be scaled to two- and three-dimensional data. The proposed models exhibit good performance in synthetic experiments.
Probabilistic forecasting of time series is an important matter in many applications and research fields. In order to draw conclusions from a probabilistic forecast, we must ensure that the model class used to approximate the true forecasting distribution is expressive enough. Yet, characteristics of the model itself, such as its uncertainty or its general functioning are not of lesser importance. In this paper, we propose Autoregressive Transformation Models (ATMs), a model class inspired from various research directions such as normalizing flows and autoregressive models. ATMs unite expressive distributional forecasts using a semi-parametric distribution assumption with an interpretable model specification and allow for uncertainty quantification based on (asymptotic) Maximum Likelihood theory. We demonstrate the properties of ATMs both theoretically and through empirical evaluation on several simulated and real-world forecasting datasets.
Visually scoring lung involvement in systemic sclerosis from CT scans plays an important role in monitoring progression, but its labor intensiveness hinders practical application. We proposed, therefore, an automatic scoring framework that consists of two cascaded deep regression neural networks. The first (3D) network aims to predict the craniocaudal position of five anatomically defined scoring levels on the 3D CT scans. The second (2D) network receives the resulting 2D axial slices and predicts the scores. We used 227 3D CT scans to train and validate the first network, and the resulting 1135 axial slices were used in the second network. Two experts scored independently a subset of data to obtain intra- and interobserver variabilities and the ground truth for all data was obtained in consensus. To alleviate the unbalance in training labels in the second network, we introduced a sampling technique and to increase the diversity of the training samples synthetic data was generated, mimicking ground glass and reticulation patterns. The 4-fold cross validation showed that our proposed network achieved an average MAE of 5.90, 4.66 and 4.49, weighted kappa of 0.66, 0.58 and 0.65 for total score (TOT), ground glass (GG) and reticular pattern (RET), respectively. Our network performed slightly worse than the best experts on TOT and GG prediction but it has competitive performance on RET prediction and has the potential to be an objective alternative for the visual scoring of SSc in CT thorax studies.
In many real-world applications, we are interested in approximating black-box, costly functions as accurately as possible with the smallest number of function evaluations. A complex computer code is an example of such a function. In this work, a Gaussian process (GP) emulator is used to approximate the output of complex computer code. We consider the problem of extending an initial experiment (set of model runs) sequentially to improve the emulator. A sequential sampling approach based on leave-one-out (LOO) cross-validation is proposed that can be easily extended to a batch mode. This is a desirable property since it saves the user time when parallel computing is available. After fitting a GP to training data points, the expected squared LOO (ES-LOO) error is calculated at each design point. ES-LOO is used as a measure to identify important data points. More precisely, when this quantity is large at a point it means that the quality of prediction depends a great deal on that point and adding more samples nearby could improve the accuracy of the GP. As a result, it is reasonable to select the next sample where ES-LOO is maximised. However, ES-LOO is only known at the experimental design and needs to be estimated at unobserved points. To do this, a second GP is fitted to the ES-LOO errors and where the maximum of the modified expected improvement (EI) criterion occurs is chosen as the next sample. EI is a popular acquisition function in Bayesian optimisation and is used to trade-off between local/global search. However, it has a tendency towards exploitation, meaning that its maximum is close to the (current) "best" sample. To avoid clustering, a modified version of EI, called pseudo expected improvement, is employed which is more explorative than EI yet allows us to discover unexplored regions. Our results show that the proposed sampling method is promising.
Partial least squares (PLS) is a dimensionality reduction technique used as an alternative to ordinary least squares (OLS) in situations where the data is colinear or high dimensional. Both PLS and OLS provide mean based estimates, which are extremely sensitive to the presence of outliers or heavy tailed distributions. In contrast, quantile regression is an alternative to OLS that computes robust quantile based estimates. In this work, the multivariate PLS is extended to the quantile regression framework, obtaining a theoretical formulation of the problem and a robust dimensionality reduction technique that we call fast partial quantile regression (fPQR), that provides quantile based estimates. An efficient implementation of fPQR is also derived, and its performance is studied through simulation experiments and the chemometrics well known biscuit dough dataset, a real high dimensional example.
Implicit Processes (IPs) are flexible priors that can describe models such as Bayesian neural networks, neural samplers and data generators. IPs allow for approximate inference in function-space. This avoids some degenerate problems of parameter-space approximate inference due to the high number of parameters and strong dependencies. For this, an extra IP is often used to approximate the posterior of the prior IP. However, simultaneously adjusting the parameters of the prior IP and the approximate posterior IP is a challenging task. Existing methods that can tune the prior IP result in a Gaussian predictive distribution, which fails to capture important data patterns. By contrast, methods producing flexible predictive distributions by using another IP to approximate the posterior process cannot fit the prior IP to the observed data. We propose here a method that can carry out both tasks. For this, we rely on an inducing-point representation of the prior IP, as often done in the context of sparse Gaussian processes. The result is a scalable method for approximate inference with IPs that can tune the prior IP parameters to the data, and that provides accurate non-Gaussian predictive distributions.
Heatmap-based methods dominate in the field of human pose estimation by modelling the output distribution through likelihood heatmaps. In contrast, regression-based methods are more efficient but suffer from inferior performance. In this work, we explore maximum likelihood estimation (MLE) to develop an efficient and effective regression-based methods. From the perspective of MLE, adopting different regression losses is making different assumptions about the output density function. A density function closer to the true distribution leads to a better regression performance. In light of this, we propose a novel regression paradigm with Residual Log-likelihood Estimation (RLE) to capture the underlying output distribution. Concretely, RLE learns the change of the distribution instead of the unreferenced underlying distribution to facilitate the training process. With the proposed reparameterization design, our method is compatible with off-the-shelf flow models. The proposed method is effective, efficient and flexible. We show its potential in various human pose estimation tasks with comprehensive experiments. Compared to the conventional regression paradigm, regression with RLE bring 12.4 mAP improvement on MSCOCO without any test-time overhead. Moreover, for the first time, especially on multi-person pose estimation, our regression method is superior to the heatmap-based methods. Our code is available at //github.com/Jeff-sjtu/res-loglikelihood-regression
Deep convolutional neural networks (CNNs) have recently achieved great success in many visual recognition tasks. However, existing deep neural network models are computationally expensive and memory intensive, hindering their deployment in devices with low memory resources or in applications with strict latency requirements. Therefore, a natural thought is to perform model compression and acceleration in deep networks without significantly decreasing the model performance. During the past few years, tremendous progress has been made in this area. In this paper, we survey the recent advanced techniques for compacting and accelerating CNNs model developed. These techniques are roughly categorized into four schemes: parameter pruning and sharing, low-rank factorization, transferred/compact convolutional filters, and knowledge distillation. Methods of parameter pruning and sharing will be described at the beginning, after that the other techniques will be introduced. For each scheme, we provide insightful analysis regarding the performance, related applications, advantages, and drawbacks etc. Then we will go through a few very recent additional successful methods, for example, dynamic capacity networks and stochastic depths networks. After that, we survey the evaluation matrix, the main datasets used for evaluating the model performance and recent benchmarking efforts. Finally, we conclude this paper, discuss remaining challenges and possible directions on this topic.
We present a meta-learning approach for adaptive text-to-speech (TTS) with few data. During training, we learn a multi-speaker model using a shared conditional WaveNet core and independent learned embeddings for each speaker. The aim of training is not to produce a neural network with fixed weights, which is then deployed as a TTS system. Instead, the aim is to produce a network that requires few data at deployment time to rapidly adapt to new speakers. We introduce and benchmark three strategies: (i) learning the speaker embedding while keeping the WaveNet core fixed, (ii) fine-tuning the entire architecture with stochastic gradient descent, and (iii) predicting the speaker embedding with a trained neural network encoder. The experiments show that these approaches are successful at adapting the multi-speaker neural network to new speakers, obtaining state-of-the-art results in both sample naturalness and voice similarity with merely a few minutes of audio data from new speakers.
Deep neural networks and decision trees operate on largely separate paradigms; typically, the former performs representation learning with pre-specified architectures, while the latter is characterised by learning hierarchies over pre-specified features with data-driven architectures. We unite the two via adaptive neural trees (ANTs), a model that incorporates representation learning into edges, routing functions and leaf nodes of a decision tree, along with a backpropagation-based training algorithm that adaptively grows the architecture from primitive modules (e.g., convolutional layers). ANTs allow increased interpretability via hierarchical clustering, e.g., learning meaningful class associations, such as separating natural vs. man-made objects. We demonstrate this on classification and regression tasks, achieving over 99% and 90% accuracy on the MNIST and CIFAR-10 datasets, and outperforming standard neural networks, random forests and gradient boosted trees on the SARCOS dataset. Furthermore, ANT optimisation naturally adapts the architecture to the size and complexity of the training data.
We show that the output of a (residual) convolutional neural network (CNN) with an appropriate prior over the weights and biases is a Gaussian process (GP) in the limit of infinitely many convolutional filters, extending similar results for dense networks. For a CNN, the equivalent kernel can be computed exactly and, unlike "deep kernels", has very few parameters: only the hyperparameters of the original CNN. Further, we show that this kernel has two properties that allow it to be computed efficiently; the cost of evaluating the kernel for a pair of images is similar to a single forward pass through the original CNN with only one filter per layer. The kernel equivalent to a 32-layer ResNet obtains 0.84% classification error on MNIST, a new record for GPs with a comparable number of parameters.