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Clustering techniques have been the key drivers of data mining, machine learning and pattern recognition for decades. One of the most popular clustering algorithms is DBSCAN due to its high accuracy and noise tolerance. Many superior algorithms such as DBSCAN have input parameters that are hard to estimate. Therefore, finding those parameters is a time consuming process. In this paper, we propose a novel clustering algorithm Bacteria-Farm, which balances the performance and ease of finding the optimal parameters for clustering. Bacteria- Farm algorithm is inspired by the growth of bacteria in closed experimental farms - their ability to consume food and grow - which closely represents the ideal cluster growth desired in clustering algorithms. In addition, the algorithm features a modular design to allow the creation of versions of the algorithm for specific tasks / distributions of data. In contrast with other clustering algorithms, our algorithm also has a provision to specify the amount of noise to be excluded during clustering.

We introduce a metric for evaluating the robustness of a classifier, with particular attention to adversarial perturbations, in terms of expected functionality with respect to possible adversarial perturbations. A classifier is assumed to be non-functional (that is, has a functionality of zero) with respect to a perturbation bound if a conventional measure of performance, such as classification accuracy, is less than a minimally viable threshold when the classifier is tested on examples from that perturbation bound. Defining robustness in terms of an expected value is motivated by a domain general approach to robustness quantification.

It is often useful to perform integration over learned functions represented by neural networks. However, this integration is usually performed numerically, as analytical integration over learned functions (especially neural networks) is generally viewed as intractable. In this work, we present a method for representing the analytical integral of a learned function $f$. This allows the exact integral of a neural network to be computed, and enables constrained neural networks to be parametrised by applying constraints directly to the integral. Crucially, we also introduce a method to constrain $f$ to be positive, a necessary condition for many applications (e.g. probability distributions, distance metrics, etc). Finally, we introduce several applications where our fixed-integral neural network (FINN) can be utilised.

Deep neural networks (DNN) have demonstrated unprecedented success for medical imaging applications. However, due to the issue of limited dataset availability and the strict legal and ethical requirements for patient privacy protection, the broad applications of medical imaging classification driven by DNN with large-scale training data have been largely hindered. For example, when training the DNN from one domain (e.g., with data only from one hospital), the generalization capability to another domain (e.g., data from another hospital) could be largely lacking. In this paper, we aim to tackle this problem by developing the privacy-preserving constrained domain generalization method, aiming to improve the generalization capability under the privacy-preserving condition. In particular, We propose to improve the information aggregation process on the centralized server-side with a novel gradient alignment loss, expecting that the trained model can be better generalized to the "unseen" but related medical images. The rationale and effectiveness of our proposed method can be explained by connecting our proposed method with the Maximum Mean Discrepancy (MMD) which has been widely adopted as the distribution distance measurement. Experimental results on two challenging medical imaging classification tasks indicate that our method can achieve better cross-domain generalization capability compared to the state-of-the-art federated learning methods.

This paper presents a case for exemplar parallelism of neural networks using Go as parallelization framework. Further it is shown that also limited multi-core hardware systems are feasible for these parallelization tasks, as notebooks and single board computer systems. The main question was how much speedup can be generated when using concurrent Go goroutines specifically. A simple concurrent feedforward network for MNIST digit recognition with the programming language Go was created to find the answer. The first findings when using a notebook (Lenovo Yoga 2) showed a speedup of 252% when utilizing 4 goroutines. Testing a single board computer (Banana Pi M3) delivered more convincing results: 320% with 4 goroutines, and 432% with 8 goroutines.

Deep neural networks have shown impressive performance for image-based disease detection. Performance is commonly evaluated through clinical validation on independent test sets to demonstrate clinically acceptable accuracy. Reporting good performance metrics on test sets, however, is not always a sufficient indication of the generalizability and robustness of an algorithm. In particular, when the test data is drawn from the same distribution as the training data, the iid test set performance can be an unreliable estimate of the accuracy on new data. In this paper, we employ stress testing to assess model robustness and subgroup performance disparities in disease detection models. We design progressive stress testing using five different bidirectional and unidirectional image perturbations with six different severity levels. As a use case, we apply stress tests to measure the robustness of disease detection models for chest X-ray and skin lesion images, and demonstrate the importance of studying class and domain-specific model behaviour. Our experiments indicate that some models may yield more robust and equitable performance than others. We also find that pretraining characteristics play an important role in downstream robustness. We conclude that progressive stress testing is a viable and important tool and should become standard practice in the clinical validation of image-based disease detection models.

We consider the problem of explaining the predictions of graph neural networks (GNNs), which otherwise are considered as black boxes. Existing methods invariably focus on explaining the importance of graph nodes or edges but ignore the substructures of graphs, which are more intuitive and human-intelligible. In this work, we propose a novel method, known as SubgraphX, to explain GNNs by identifying important subgraphs. Given a trained GNN model and an input graph, our SubgraphX explains its predictions by efficiently exploring different subgraphs with Monte Carlo tree search. To make the tree search more effective, we propose to use Shapley values as a measure of subgraph importance, which can also capture the interactions among different subgraphs. To expedite computations, we propose efficient approximation schemes to compute Shapley values for graph data. Our work represents the first attempt to explain GNNs via identifying subgraphs explicitly and directly. Experimental results show that our SubgraphX achieves significantly improved explanations, while keeping computations at a reasonable level.

Graph Neural Networks (GNNs), which generalize deep neural networks to graph-structured data, have drawn considerable attention and achieved state-of-the-art performance in numerous graph related tasks. However, existing GNN models mainly focus on designing graph convolution operations. The graph pooling (or downsampling) operations, that play an important role in learning hierarchical representations, are usually overlooked. In this paper, we propose a novel graph pooling operator, called Hierarchical Graph Pooling with Structure Learning (HGP-SL), which can be integrated into various graph neural network architectures. HGP-SL incorporates graph pooling and structure learning into a unified module to generate hierarchical representations of graphs. More specifically, the graph pooling operation adaptively selects a subset of nodes to form an induced subgraph for the subsequent layers. To preserve the integrity of graph's topological information, we further introduce a structure learning mechanism to learn a refined graph structure for the pooled graph at each layer. By combining HGP-SL operator with graph neural networks, we perform graph level representation learning with focus on graph classification task. Experimental results on six widely used benchmarks demonstrate the effectiveness of our proposed model.

Recently, graph neural networks (GNNs) have revolutionized the field of graph representation learning through effectively learned node embeddings, and achieved state-of-the-art results in tasks such as node classification and link prediction. However, current GNN methods are inherently flat and do not learn hierarchical representations of graphs---a limitation that is especially problematic for the task of graph classification, where the goal is to predict the label associated with an entire graph. Here we propose DiffPool, a differentiable graph pooling module that can generate hierarchical representations of graphs and can be combined with various graph neural network architectures in an end-to-end fashion. DiffPool learns a differentiable soft cluster assignment for nodes at each layer of a deep GNN, mapping nodes to a set of clusters, which then form the coarsened input for the next GNN layer. Our experimental results show that combining existing GNN methods with DiffPool yields an average improvement of 5-10% accuracy on graph classification benchmarks, compared to all existing pooling approaches, achieving a new state-of-the-art on four out of five benchmark data sets.

Deep neural networks (DNNs) have been found to be vulnerable to adversarial examples resulting from adding small-magnitude perturbations to inputs. Such adversarial examples can mislead DNNs to produce adversary-selected results. Different attack strategies have been proposed to generate adversarial examples, but how to produce them with high perceptual quality and more efficiently requires more research efforts. In this paper, we propose AdvGAN to generate adversarial examples with generative adversarial networks (GANs), which can learn and approximate the distribution of original instances. For AdvGAN, once the generator is trained, it can generate adversarial perturbations efficiently for any instance, so as to potentially accelerate adversarial training as defenses. We apply AdvGAN in both semi-whitebox and black-box attack settings. In semi-whitebox attacks, there is no need to access the original target model after the generator is trained, in contrast to traditional white-box attacks. In black-box attacks, we dynamically train a distilled model for the black-box model and optimize the generator accordingly. Adversarial examples generated by AdvGAN on different target models have high attack success rate under state-of-the-art defenses compared to other attacks. Our attack has placed the first with 92.76% accuracy on a public MNIST black-box attack challenge.