Phylogenetic Diversity (PD) is a measure of the overall biodiversity of a set of present-day species (taxa) within a phylogenetic tree. In Maximize Phylogenetic Diversity (MPD) one is asked to find a set of taxa (of bounded size/cost) for which this measure is maximized. MPD is a relevant problem in conservation planning, where there are not enough resources to preserve all taxa and minimizing the overall loss of biodiversity is critical. We consider an extension of this problem, motivated by real-world concerns, in which each taxon not only requires a certain amount of time to save, but also has an extinction time after which it can no longer be saved. In addition there may be multiple teams available to work on preservation efforts in parallel; we consider two variants of the problem based on whether teams are allowed to collaborate on the same taxa. These problems have much in common with machine scheduling problems, (with taxa corresponding to tasks and teams corresponding to machines), but with the objective function (the phylogenetic diversity) inspired by biological considerations. Our extensions are, in contrast to the original MPD, NP-hard, even in very restricted cases. We provide several algorithms and hardness-results and thereby show that the problems are fixed-parameter tractable (FPT) when parameterized the target phylogenetic diversity, and that the problem where teams are allowed to collaborate is FPT when parameterized the acceptable loss of diversity.
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Optimal transport (OT) and the related Wasserstein metric (W) are powerful and ubiquitous tools for comparing distributions. However, computing pairwise Wasserstein distances rapidly becomes intractable as cohort size grows. An attractive alternative would be to find an embedding space in which pairwise Euclidean distances map to OT distances, akin to standard multidimensional scaling (MDS). We present Wasserstein Wormhole, a transformer-based autoencoder that embeds empirical distributions into a latent space wherein Euclidean distances approximate OT distances. Extending MDS theory, we show that our objective function implies a bound on the error incurred when embedding non-Euclidean distances. Empirically, distances between Wormhole embeddings closely match Wasserstein distances, enabling linear time computation of OT distances. Along with an encoder that maps distributions to embeddings, Wasserstein Wormhole includes a decoder that maps embeddings back to distributions, allowing for operations in the embedding space to generalize to OT spaces, such as Wasserstein barycenter estimation and OT interpolation. By lending scalability and interpretability to OT approaches, Wasserstein Wormhole unlocks new avenues for data analysis in the fields of computational geometry and single-cell biology.
Robust Reinforcement Learning (RRL) is a promising Reinforcement Learning (RL) paradigm aimed at training robust to uncertainty or disturbances models, making them more efficient for real-world applications. Following this paradigm, uncertainty or disturbances are interpreted as actions of a second adversarial agent, and thus, the problem is reduced to seeking the agents' policies robust to any opponent's actions. This paper is the first to propose considering the RRL problems within the positional differential game theory, which helps us to obtain theoretically justified intuition to develop a centralized Q-learning approach. Namely, we prove that under Isaacs's condition (sufficiently general for real-world dynamical systems), the same Q-function can be utilized as an approximate solution of both minimax and maximin Bellman equations. Based on these results, we present the Isaacs Deep Q-Network algorithms and demonstrate their superiority compared to other baseline RRL and Multi-Agent RL algorithms in various environments.
Large Vision-Language models (VLMs) have demonstrated strong reasoning capabilities in tasks requiring a fine-grained understanding of literal images and text, such as visual question-answering or visual entailment. However, there has been little exploration of these models' capabilities when presented with images and captions containing figurative phenomena such as metaphors or humor, the meaning of which is often implicit. To close this gap, we propose a new task and a high-quality dataset: Visual Figurative Language Understanding with Textual Explanations (V-FLUTE). We frame the visual figurative language understanding problem as an explainable visual entailment task, where the model has to predict whether the image (premise) entails a claim (hypothesis) and justify the predicted label with a textual explanation. Using a human-AI collaboration framework, we build a high-quality dataset, V-FLUTE, that contains 6,027 <image, claim, label, explanation> instances spanning five diverse multimodal figurative phenomena: metaphors, similes, idioms, sarcasm, and humor. The figurative phenomena can be present either in the image, the caption, or both. We further conduct both automatic and human evaluations to assess current VLMs' capabilities in understanding figurative phenomena.
Centred Kernel Alignment (CKA) has recently emerged as a popular metric to compare activations from biological and artificial neural networks (ANNs) in order to quantify the alignment between internal representations derived from stimuli sets (e.g. images, text, video) that are presented to both systems. In this paper we highlight issues that the community should take into account if using CKA as an alignment metric with neural data. Neural data are in the low-data high-dimensionality domain, which is one of the cases where (biased) CKA results in high similarity scores even for pairs of random matrices. Using fMRI and MEG data from the THINGS project, we show that if biased CKA is applied to representations of different sizes in the low-data high-dimensionality domain, they are not directly comparable due to biased CKA's sensitivity to differing feature-sample ratios and not stimuli-driven responses. This situation can arise both when comparing a pre-selected area of interest (e.g. ROI) to multiple ANN layers, as well as when determining to which ANN layer multiple regions of interest (ROIs) / sensor groups of different dimensionality are most similar. We show that biased CKA can be artificially driven to its maximum value when using independent random data of different sample-feature ratios. We further show that shuffling sample-feature pairs of real neural data does not drastically alter biased CKA similarity in comparison to unshuffled data, indicating an undesirable lack of sensitivity to stimuli-driven neural responses. Positive alignment of true stimuli-driven responses is only achieved by using debiased CKA. Lastly, we report findings that suggest biased CKA is sensitive to the inherent structure of neural data, only differing from shuffled data when debiased CKA detects stimuli-driven alignment.
Distinguishing causal connections from correlations is important in many scenarios. However, the presence of unobserved variables, such as the latent confounder, can introduce bias in conditional independence testing commonly employed in constraint-based causal discovery for identifying causal relations. To address this issue, existing methods introduced proxy variables to adjust for the bias caused by unobserveness. However, these methods were either limited to categorical variables or relied on strong parametric assumptions for identification. In this paper, we propose a novel hypothesis-testing procedure that can effectively examine the existence of the causal relationship over continuous variables, without any parametric constraint. Our procedure is based on discretization, which under completeness conditions, is able to asymptotically establish a linear equation whose coefficient vector is identifiable under the causal null hypothesis. Based on this, we introduce our test statistic and demonstrate its asymptotic level and power. We validate the effectiveness of our procedure using both synthetic and real-world data.
Large Language Models (LLMs) have significantly advanced natural language processing (NLP) tasks but also pose ethical and societal risks due to their propensity to generate harmful content. To address this, various approaches have been developed to safeguard LLMs from producing unsafe content. However, existing methods have limitations, including the need for training specific control models and proactive intervention during text generation, that lead to quality degradation and increased computational overhead. To mitigate those limitations, we propose LLMSafeGuard, a lightweight framework to safeguard LLM text generation in real-time. LLMSafeGuard integrates an external validator into the beam search algorithm during decoding, rejecting candidates that violate safety constraints while allowing valid ones to proceed. We introduce a similarity based validation approach, simplifying constraint introduction and eliminating the need for control model training. Additionally, LLMSafeGuard employs a context-wise timing selection strategy, intervening LLMs only when necessary. We evaluate LLMSafeGuard on two tasks, detoxification and copyright safeguarding, and demonstrate its superior performance over SOTA baselines. For instance, LLMSafeGuard reduces the average toxic score of. LLM output by 29.7% compared to the best baseline meanwhile preserving similar linguistic quality as natural output in detoxification task. Similarly, in the copyright task, LLMSafeGuard decreases the Longest Common Subsequence (LCS) by 56.2% compared to baselines. Moreover, our context-wise timing selection strategy reduces inference time by at least 24% meanwhile maintaining comparable effectiveness as validating each time step. LLMSafeGuard also offers tunable parameters to balance its effectiveness and efficiency.
Retrieval-Augmented Generation (RAG) has recently emerged as a method to extend beyond the pre-trained knowledge of Large Language Models by augmenting the original prompt with relevant passages or documents retrieved by an Information Retrieval (IR) system. RAG has become increasingly important for Generative AI solutions, especially in enterprise settings or in any domain in which knowledge is constantly refreshed and cannot be memorized in the LLM. We argue here that the retrieval component of RAG systems, be it dense or sparse, deserves increased attention from the research community, and accordingly, we conduct the first comprehensive and systematic examination of the retrieval strategy of RAG systems. We focus, in particular, on the type of passages IR systems within a RAG solution should retrieve. Our analysis considers multiple factors, such as the relevance of the passages included in the prompt context, their position, and their number. One counter-intuitive finding of this work is that the retriever's highest-scoring documents that are not directly relevant to the query (e.g., do not contain the answer) negatively impact the effectiveness of the LLM. Even more surprising, we discovered that adding random documents in the prompt improves the LLM accuracy by up to 35%. These results highlight the need to investigate the appropriate strategies when integrating retrieval with LLMs, thereby laying the groundwork for future research in this area.
In recent years, Face Image Quality Assessment (FIQA) has become an indispensable part of the face recognition system to guarantee the stability and reliability of recognition performance in an unconstrained scenario. For this purpose, the FIQA method should consider both the intrinsic property and the recognizability of the face image. Most previous works aim to estimate the sample-wise embedding uncertainty or pair-wise similarity as the quality score, which only considers the information from partial intra-class. However, these methods ignore the valuable information from the inter-class, which is for estimating to the recognizability of face image. In this work, we argue that a high-quality face image should be similar to its intra-class samples and dissimilar to its inter-class samples. Thus, we propose a novel unsupervised FIQA method that incorporates Similarity Distribution Distance for Face Image Quality Assessment (SDD-FIQA). Our method generates quality pseudo-labels by calculating the Wasserstein Distance (WD) between the intra-class similarity distributions and inter-class similarity distributions. With these quality pseudo-labels, we are capable of training a regression network for quality prediction. Extensive experiments on benchmark datasets demonstrate that the proposed SDD-FIQA surpasses the state-of-the-arts by an impressive margin. Meanwhile, our method shows good generalization across different recognition systems.
Humans and animals have the ability to continually acquire, fine-tune, and transfer knowledge and skills throughout their lifespan. This ability, referred to as lifelong learning, is mediated by a rich set of neurocognitive mechanisms that together contribute to the development and specialization of our sensorimotor skills as well as to long-term memory consolidation and retrieval. Consequently, lifelong learning capabilities are crucial for autonomous agents interacting in the real world and processing continuous streams of information. However, lifelong learning remains a long-standing challenge for machine learning and neural network models since the continual acquisition of incrementally available information from non-stationary data distributions generally leads to catastrophic forgetting or interference. This limitation represents a major drawback for state-of-the-art deep neural network models that typically learn representations from stationary batches of training data, thus without accounting for situations in which information becomes incrementally available over time. In this review, we critically summarize the main challenges linked to lifelong learning for artificial learning systems and compare existing neural network approaches that alleviate, to different extents, catastrophic forgetting. We discuss well-established and emerging research motivated by lifelong learning factors in biological systems such as structural plasticity, memory replay, curriculum and transfer learning, intrinsic motivation, and multisensory integration.
Semantic Role Labeling (SRL) is believed to be a crucial step towards natural language understanding and has been widely studied. Recent years, end-to-end SRL with recurrent neural networks (RNN) has gained increasing attention. However, it remains a major challenge for RNNs to handle structural information and long range dependencies. In this paper, we present a simple and effective architecture for SRL which aims to address these problems. Our model is based on self-attention which can directly capture the relationships between two tokens regardless of their distance. Our single model achieves F$_1=83.4$ on the CoNLL-2005 shared task dataset and F$_1=82.7$ on the CoNLL-2012 shared task dataset, which outperforms the previous state-of-the-art results by $1.8$ and $1.0$ F$_1$ score respectively. Besides, our model is computationally efficient, and the parsing speed is 50K tokens per second on a single Titan X GPU.
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