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We use Markov categories to develop generalizations of the theory of Markov chains and hidden Markov models in an abstract setting. This comprises characterizations of hidden Markov models in terms of local and global conditional independences as well as existing algorithms for Bayesian filtering and smoothing applicable in all Markov categories with conditionals. We show that these algorithms specialize to existing ones such as the Kalman filter, forward-backward algorithm, and the Rauch-Tung-Striebel smoother when instantiated in appropriate Markov categories. Under slightly stronger assumptions, we also prove that the sequence of outputs of the Bayes filter is itself a Markov chain with a concrete formula for its transition maps. There are two main features of this categorical framework. The first is its generality, as it can be used in any Markov category with conditionals. In particular, it provides a systematic unified account of hidden Markov models and algorithms for filtering and smoothing in discrete probability, Gaussian probability, measure-theoretic probability, possibilistic nondeterminism and others at the same time. The second feature is the intuitive visual representation of information flow in these algorithms in terms of string diagrams.

We investigate both the theoretical and algorithmic aspects of likelihood-based methods for recovering a complex-valued signal from multiple sets of measurements, referred to as looks, affected by speckle (multiplicative) noise. Our theoretical contributions include establishing the first existing theoretical upper bound on the Mean Squared Error (MSE) of the maximum likelihood estimator under the deep image prior hypothesis. Our theoretical results capture the dependence of MSE upon the number of parameters in the deep image prior, the number of looks, the signal dimension, and the number of measurements per look. On the algorithmic side, we introduce the concept of bagged Deep Image Priors (Bagged-DIP) and integrate them with projected gradient descent. Furthermore, we show how employing Newton-Schulz algorithm for calculating matrix inverses within the iterations of PGD reduces the computational complexity of the algorithm. We will show that this method achieves the state-of-the-art performance.

Passwords remain a widely-used authentication mechanism, despite their well-known security and usability limitations. To improve on this situation, next-generation authentication mechanisms, based on behavioral biometric factors such as eye movement and brainwave have emerged. However, their usability remains relatively under-explored. To fill this gap, we conducted an empirical user study (n=32 participants) to evaluate three brain-based and three eye-based authentication mechanisms, using both qualitative and quantitative methods. Our findings show good overall usability according to the System Usability Scale for both categories of mechanisms, with average SUS scores in the range of 78.6-79.6 and the best mechanisms rated with an "excellent" score. Participants particularly identified brainwave authentication as more secure yet more privacy-invasive and effort-intensive compared to eye movement authentication. However, the significant number of neutral responses indicates participants' need for more detailed information about the security and privacy implications of these authentication methods. Building on the collected evidence, we identify three key areas for improvement: privacy, authentication interface design, and verification time. We offer recommendations for designers and developers to improve the usability and security of next-generation authentication mechanisms.

The performance of stochastic gradient descent (SGD), which is the simplest first-order optimizer for training deep neural networks, depends on not only the learning rate but also the batch size. They both affect the number of iterations and the stochastic first-order oracle (SFO) complexity needed for training. In particular, the previous numerical results indicated that, for SGD using a constant learning rate, the number of iterations needed for training decreases when the batch size increases, and the SFO complexity needed for training is minimized at a critical batch size and that it increases once the batch size exceeds that size. Here, we study the relationship between batch size and the iteration and SFO complexities needed for nonconvex optimization in deep learning with SGD using constant or decaying learning rates and show that SGD using the critical batch size minimizes the SFO complexity. We also provide numerical comparisons of SGD with the existing first-order optimizers and show the usefulness of SGD using a critical batch size. Moreover, we show that measured critical batch sizes are close to the sizes estimated from our theoretical results.

This paper presents the first systematic study of the evaluation of Deep Neural Networks (DNNs) for discrete dynamical systems under stochastic assumptions, with a focus on wildfire prediction. We develop a framework to study the impact of stochasticity on two classes of evaluation metrics: classification-based metrics, which assess fidelity to observed ground truth (GT), and proper scoring rules, which test fidelity-to-statistic. Our findings reveal that evaluating for fidelity-to-statistic is a reliable alternative in highly stochastic scenarios. We extend our analysis to real-world wildfire data, highlighting limitations in traditional wildfire prediction evaluation methods, and suggest interpretable stochasticity-compatible alternatives.

We consider identification of optimal dynamic treatment regimes in a setting where time-varying treatments are confounded by hidden time-varying confounders, but proxy variables of the unmeasured confounders are available. We show that, with two independent proxy variables at each time point that are sufficiently relevant for the hidden confounders, identification of the joint distribution of counterfactuals is possible, thereby facilitating identification of an optimal treatment regime.

Recently, graph neural networks have been gaining a lot of attention to simulate dynamical systems due to their inductive nature leading to zero-shot generalizability. Similarly, physics-informed inductive biases in deep-learning frameworks have been shown to give superior performance in learning the dynamics of physical systems. There is a growing volume of literature that attempts to combine these two approaches. Here, we evaluate the performance of thirteen different graph neural networks, namely, Hamiltonian and Lagrangian graph neural networks, graph neural ODE, and their variants with explicit constraints and different architectures. We briefly explain the theoretical formulation highlighting the similarities and differences in the inductive biases and graph architecture of these systems. We evaluate these models on spring, pendulum, gravitational, and 3D deformable solid systems to compare the performance in terms of rollout error, conserved quantities such as energy and momentum, and generalizability to unseen system sizes. Our study demonstrates that GNNs with additional inductive biases, such as explicit constraints and decoupling of kinetic and potential energies, exhibit significantly enhanced performance. Further, all the physics-informed GNNs exhibit zero-shot generalizability to system sizes an order of magnitude larger than the training system, thus providing a promising route to simulate large-scale realistic systems.

The rapid development of deep learning has made a great progress in segmentation, one of the fundamental tasks of computer vision. However, the current segmentation algorithms mostly rely on the availability of pixel-level annotations, which are often expensive, tedious, and laborious. To alleviate this burden, the past years have witnessed an increasing attention in building label-efficient, deep-learning-based segmentation algorithms. This paper offers a comprehensive review on label-efficient segmentation methods. To this end, we first develop a taxonomy to organize these methods according to the supervision provided by different types of weak labels (including no supervision, coarse supervision, incomplete supervision and noisy supervision) and supplemented by the types of segmentation problems (including semantic segmentation, instance segmentation and panoptic segmentation). Next, we summarize the existing label-efficient segmentation methods from a unified perspective that discusses an important question: how to bridge the gap between weak supervision and dense prediction -- the current methods are mostly based on heuristic priors, such as cross-pixel similarity, cross-label constraint, cross-view consistency, cross-image relation, etc. Finally, we share our opinions about the future research directions for label-efficient deep segmentation.

We introduce a multi-task setup of identifying and classifying entities, relations, and coreference clusters in scientific articles. We create SciERC, a dataset that includes annotations for all three tasks and develop a unified framework called Scientific Information Extractor (SciIE) for with shared span representations. The multi-task setup reduces cascading errors between tasks and leverages cross-sentence relations through coreference links. Experiments show that our multi-task model outperforms previous models in scientific information extraction without using any domain-specific features. We further show that the framework supports construction of a scientific knowledge graph, which we use to analyze information in scientific literature.

Object detection typically assumes that training and test data are drawn from an identical distribution, which, however, does not always hold in practice. Such a distribution mismatch will lead to a significant performance drop. In this work, we aim to improve the cross-domain robustness of object detection. We tackle the domain shift on two levels: 1) the image-level shift, such as image style, illumination, etc, and 2) the instance-level shift, such as object appearance, size, etc. We build our approach based on the recent state-of-the-art Faster R-CNN model, and design two domain adaptation components, on image level and instance level, to reduce the domain discrepancy. The two domain adaptation components are based on H-divergence theory, and are implemented by learning a domain classifier in adversarial training manner. The domain classifiers on different levels are further reinforced with a consistency regularization to learn a domain-invariant region proposal network (RPN) in the Faster R-CNN model. We evaluate our newly proposed approach using multiple datasets including Cityscapes, KITTI, SIM10K, etc. The results demonstrate the effectiveness of our proposed approach for robust object detection in various domain shift scenarios.