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In practical scenarios involving the measurement of surface electromyography (sEMG) in muscles, particularly those areas near the heart, one of the primary sources of contamination is the presence of electrocardiogram (ECG) signals. To assess the quality of real-world sEMG data more effectively, this study proposes QASE-net, a new non-intrusive model that predicts the SNR of sEMG signals. QASE-net combines CNN-BLSTM with attention mechanisms and follows an end-to-end training strategy. Our experimental framework utilizes real-world sEMG and ECG data from two open-access databases, the Non-Invasive Adaptive Prosthetics Database and the MIT-BIH Normal Sinus Rhythm Database, respectively. The experimental results demonstrate the superiority of QASE-net over the previous assessment model, exhibiting significantly reduced prediction errors and notably higher linear correlations with the ground truth. These findings show the potential of QASE-net to substantially enhance the reliability and precision of sEMG quality assessment in practical applications.

The Yang and Prentice (YP) regression models have garnered interest from the scientific community due to their ability to analyze data whose survival curves exhibit intersection. These models include proportional hazards (PH) and proportional odds (PO) models as specific cases. However, they encounter limitations when dealing with multivariate survival data due to potential dependencies between the times-to-event. A solution is introducing a frailty term into the hazard functions, making it possible for the times-to-event to be considered independent, given the frailty term. In this study, we propose a new class of YP models that incorporate frailty. We use the exponential distribution, the piecewise exponential distribution (PE), and Bernstein polynomials (BP) as baseline functions. Our approach adopts a Bayesian methodology. The proposed models are evaluated through a simulation study, which shows that the YP frailty models with BP and PE baselines perform similarly to the generator parametric model of the data. We apply the models in two real data sets.

The Reeb space is a topological structure which is a generalization of the notion of the Reeb graph to multi-fields. Its effectiveness has been established in revealing topological features in data across diverse computational domains which cannot be identified using the Reeb graph or other scalar-topology-based methods. Approximations of Reeb spaces such as the Mapper and the Joint Contour Net have been developed based on quantization of the range. However, computing the topologically correct Reeb space dispensing the range-quantization is a challenging problem. In the current paper, we develop an algorithm for computing a correct net-like approximation corresponding to the Reeb space of a generic piecewise-linear (PL) bivariate field based on a multi-dimensional Reeb graph (MDRG). First, we prove that the Reeb space is homeomorphic to its MDRG. Subsequently, we introduce an algorithm for computing the MDRG of a generic PL bivariate field through the computation of its Jacobi set and Jacobi structure, a projection of the Jacobi set into the Reeb space. This marks the first algorithm for MDRG computation without requiring the quantization of bivariate fields. Following this, we compute a net-like structure embedded in the corresponding Reeb space using the MDRG and the Jacobi structure. We provide the proof of correctness and complexity analysis of our algorithm.

While conformal predictors reap the benefits of rigorous statistical guarantees on their error frequency, the size of their corresponding prediction sets is critical to their practical utility. Unfortunately, there is currently a lack of finite-sample analysis and guarantees for their prediction set sizes. To address this shortfall, we theoretically quantify the expected size of the prediction sets under the split conformal prediction framework. As this precise formulation cannot usually be calculated directly, we further derive point estimates and high-probability interval bounds that can be empirically computed, providing a practical method for characterizing the expected set size. We corroborate the efficacy of our results with experiments on real-world datasets for both regression and classification problems.

Understanding causal relationships between variables is a fundamental problem with broad impact in numerous scientific fields. While extensive research has been dedicated to learning causal graphs from data, its complementary concept of testing causal relationships has remained largely unexplored. While learning involves the task of recovering the Markov equivalence class (MEC) of the underlying causal graph from observational data, the testing counterpart addresses the following critical question: Given a specific MEC and observational data from some causal graph, can we determine if the data-generating causal graph belongs to the given MEC? We explore constraint-based testing methods by establishing bounds on the required number of conditional independence tests. Our bounds are in terms of the size of the maximum undirected clique ($s$) of the given MEC. In the worst case, we show a lower bound of $\exp(\Omega(s))$ independence tests. We then give an algorithm that resolves the task with $\exp(O(s))$ tests, matching our lower bound. Compared to the learning problem, where algorithms often use a number of independence tests that is exponential in the maximum in-degree, this shows that testing is relatively easier. In particular, it requires exponentially less independence tests in graphs featuring high in-degrees and small clique sizes. Additionally, using the DAG associahedron, we provide a geometric interpretation of testing versus learning and discuss how our testing result can aid learning.

Continuously-observed event occurrences, often exhibit self- and mutually-exciting effects, which can be well modeled using temporal point processes. Beyond that, these event dynamics may also change over time, with certain periodic trends. We propose a novel variational auto-encoder to capture such a mixture of temporal dynamics. More specifically, the whole time interval of the input sequence is partitioned into a set of sub-intervals. The event dynamics are assumed to be stationary within each sub-interval, but could be changing across those sub-intervals. In particular, we use a sequential latent variable model to learn a dependency graph between the observed dimensions, for each sub-interval. The model predicts the future event times, by using the learned dependency graph to remove the noncontributing influences of past events. By doing so, the proposed model demonstrates its higher accuracy in predicting inter-event times and event types for several real-world event sequences, compared with existing state of the art neural point processes.

Conservation laws are an inherent feature in many systems modeling real world phenomena, in particular, those modeling biological and chemical systems. If the form of the underlying dynamical system is known, linear algebra and algebraic geometry methods can be used to identify the conservation laws. Our work focuses on using data-driven methods to identify the conservation law(s) in the absence of the knowledge of system dynamics. Building in part upon the ideas proposed in [arXiv:1811.00961], we develop a robust data-driven computational framework that automates the process of identifying the number and type of the conservation law(s) while keeping the amount of required data to a minimum. We demonstrate that due to relative stability of singular vectors to noise we are able to reconstruct correct conservation laws without the need for excessive parameter tuning. While we focus primarily on biological examples, the framework proposed herein is suitable for a variety of data science applications and can be coupled with other machine learning approaches.

Graph neural networks (GNNs) have been demonstrated to be a powerful algorithmic model in broad application fields for their effectiveness in learning over graphs. To scale GNN training up for large-scale and ever-growing graphs, the most promising solution is distributed training which distributes the workload of training across multiple computing nodes. However, the workflows, computational patterns, communication patterns, and optimization techniques of distributed GNN training remain preliminarily understood. In this paper, we provide a comprehensive survey of distributed GNN training by investigating various optimization techniques used in distributed GNN training. First, distributed GNN training is classified into several categories according to their workflows. In addition, their computational patterns and communication patterns, as well as the optimization techniques proposed by recent work are introduced. Second, the software frameworks and hardware platforms of distributed GNN training are also introduced for a deeper understanding. Third, distributed GNN training is compared with distributed training of deep neural networks, emphasizing the uniqueness of distributed GNN training. Finally, interesting issues and opportunities in this field are discussed.

Analyzing observational data from multiple sources can be useful for increasing statistical power to detect a treatment effect; however, practical constraints such as privacy considerations may restrict individual-level information sharing across data sets. This paper develops federated methods that only utilize summary-level information from heterogeneous data sets. Our federated methods provide doubly-robust point estimates of treatment effects as well as variance estimates. We derive the asymptotic distributions of our federated estimators, which are shown to be asymptotically equivalent to the corresponding estimators from the combined, individual-level data. We show that to achieve these properties, federated methods should be adjusted based on conditions such as whether models are correctly specified and stable across heterogeneous data sets.

Residual networks (ResNets) have displayed impressive results in pattern recognition and, recently, have garnered considerable theoretical interest due to a perceived link with neural ordinary differential equations (neural ODEs). This link relies on the convergence of network weights to a smooth function as the number of layers increases. We investigate the properties of weights trained by stochastic gradient descent and their scaling with network depth through detailed numerical experiments. We observe the existence of scaling regimes markedly different from those assumed in neural ODE literature. Depending on certain features of the network architecture, such as the smoothness of the activation function, one may obtain an alternative ODE limit, a stochastic differential equation or neither of these. These findings cast doubts on the validity of the neural ODE model as an adequate asymptotic description of deep ResNets and point to an alternative class of differential equations as a better description of the deep network limit.