This paper studies 3D low-dose computed tomography (CT) imaging. Although various deep learning methods were developed in this context, typically they perform denoising due to low-dose and deblurring for super-resolution separately. Up to date, little work was done for simultaneous in-plane denoising and through-plane deblurring, which is important to improve clinical CT images. For this task, a straightforward method is to directly train an end-to-end 3D network. However, it demands much more training data and expensive computational costs. Here, we propose to link in-plane and through-plane transformers for simultaneous in-plane denoising and through-plane deblurring, termed as LIT-Former, which can efficiently synergize in-plane and through-plane sub-tasks for 3D CT imaging and enjoy the advantages of both convolution and transformer networks. LIT-Former has two novel designs: efficient multi-head self-attention modules (eMSM) and efficient convolutional feed-forward networks (eCFN). First, eMSM integrates in-plane 2D self-attention and through-plane 1D self-attention to efficiently capture global interactions of 3D self-attention, the core unit of transformer networks. Second, eCFN integrates 2D convolution and 1D convolution to extract local information of 3D convolution in the same fashion. As a result, the proposed LIT-Former synergizes these two sub-tasks, significantly reducing the computational complexity as compared to 3D counterparts and enabling rapid convergence. Extensive experimental results on simulated and clinical datasets demonstrate superior performance over state-of-the-art models.
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Self-attention modules have demonstrated remarkable capabilities in capturing long-range relationships and improving the performance of point cloud tasks. However, point cloud objects are typically characterized by complex, disordered, and non-Euclidean spatial structures with multiple scales, and their behavior is often dynamic and unpredictable. The current self-attention modules mostly rely on dot product multiplication and dimension alignment among query-key-value features, which cannot adequately capture the multi-scale non-Euclidean structures of point cloud objects. To address these problems, this paper proposes a self-attention plug-in module with its variants, Multi-scale Geometry-aware Transformer (MGT). MGT processes point cloud data with multi-scale local and global geometric information in the following three aspects. At first, the MGT divides point cloud data into patches with multiple scales. Secondly, a local feature extractor based on sphere mapping is proposed to explore the geometry inner each patch and generate a fixed-length representation for each patch. Thirdly, the fixed-length representations are fed into a novel geodesic-based self-attention to capture the global non-Euclidean geometry between patches. Finally, all the modules are integrated into the framework of MGT with an end-to-end training scheme. Experimental results demonstrate that the MGT vastly increases the capability of capturing multi-scale geometry using the self-attention mechanism and achieves strong competitive performance on mainstream point cloud benchmarks.
The Transformer has been successfully used in medical image segmentation due to its excellent long-range modeling capabilities. However, patch segmentation is necessary when building a Transformer class model. This process may disrupt the tissue structure in medical images, resulting in the loss of relevant information. In this study, we proposed a Heterogeneous Swin Transformer with Multi-Receptive Field (HST-MRF) model based on U-shaped networks for medical image segmentation. The main purpose is to solve the problem of loss of structural information caused by patch segmentation using transformer by fusing patch information under different receptive fields. The heterogeneous Swin Transformer (HST) is the core module, which achieves the interaction of multi-receptive field patch information through heterogeneous attention and passes it to the next stage for progressive learning. We also designed a two-stage fusion module, multimodal bilinear pooling (MBP), to assist HST in further fusing multi-receptive field information and combining low-level and high-level semantic information for accurate localization of lesion regions. In addition, we developed adaptive patch embedding (APE) and soft channel attention (SCA) modules to retain more valuable information when acquiring patch embedding and filtering channel features, respectively, thereby improving model segmentation quality. We evaluated HST-MRF on multiple datasets for polyp and skin lesion segmentation tasks. Experimental results show that our proposed method outperforms state-of-the-art models and can achieve superior performance. Furthermore, we verified the effectiveness of each module and the benefits of multi-receptive field segmentation in reducing the loss of structural information through ablation experiments.
Digital histopathology slides are scanned and viewed under different magnifications and stored as images at different resolutions. Convolutional Neural Networks (CNNs) trained on such images at a given scale fail to generalise to those at different scales. This inability is often addressed by augmenting training data with re-scaled images, allowing a model with sufficient capacity to learn the requisite patterns. Alternatively, designing CNN filters to be scale-equivariant frees up model capacity to learn discriminative features. In this paper, we propose the Scale-Equivariant UNet (SEUNet) for image segmentation by building on scale-space theory. The SEUNet contains groups of filters that are linear combinations of Gaussian basis filters, whose scale parameters are trainable but constrained to span disjoint scales through the layers of the network. Extensive experiments on a nuclei segmentation dataset and a tissue type segmentation dataset demonstrate that our method outperforms other approaches, with much fewer trainable parameters.
Owing to success in the data-rich domain of natural images, Transformers have recently become popular in medical image segmentation. However, the pairing of Transformers with convolutional blocks in varying architectural permutations leaves their relative effectiveness to open interpretation. We introduce Transformer Ablations that replace the Transformer blocks with plain linear operators to quantify this effectiveness. With experiments on 8 models on 2 medical image segmentation tasks, we explore -- 1) the replaceable nature of Transformer-learnt representations, 2) Transformer capacity alone cannot prevent representational replaceability and works in tandem with effective design, 3) The mere existence of explicit feature hierarchies in transformer blocks is more beneficial than accompanying self-attention modules, 4) Major spatial downsampling before Transformer modules should be used with caution.
Monolithic control plane verification cannot scale to hyperscale network architectures with tens of thousands of nodes, heterogeneous network policies and thousands of network changes a day. Instead, modular verification offers improved scalability, reasoning over diverse behaviors, and robustness following policy updates. We introduce Timepiece, a new modular control plane verification system. While one class of verifiers, starting with Minesweeper, were based on analysis of stable paths, we show that such models, when deployed naively for modular verification, are unsound. To rectify the situation, we adopt a routing model based around a logical notion of time and develop a sound, expressive, and scalable verification engine. Our system requires that a user specifies interfaces between module components. We develop methods for defining these interfaces using predicates inspired by temporal logic, and show how to use those interfaces to verify a range of network-wide properties such as reachability or access control. Verifying a prefix-filtering policy using a non-modular verification engine times out on an 80-node fattree network after 2 hours. However, Timepiece verifies a 2,000-node fattree in 2.37 minutes on a 96-core virtual machine. Modular verification of individual routers is embarrassingly parallel and completes in seconds, which allows verification to scale beyond non-modular engines, while still allowing the full power of SMT-based symbolic reasoning.
Hate speech is a societal problem that has significantly grown through the Internet. New forms of digital content such as image memes have given rise to spread of hate using multimodal means, being far more difficult to analyse and detect compared to the unimodal case. Accurate automatic processing, analysis and understanding of this kind of content will facilitate the endeavor of hindering hate speech proliferation through the digital world. To this end, we propose MemeFier, a deep learning-based architecture for fine-grained classification of Internet image memes, utilizing a dual-stage modality fusion module. The first fusion stage produces feature vectors containing modality alignment information that captures non-trivial connections between the text and image of a meme. The second fusion stage leverages the power of a Transformer encoder to learn inter-modality correlations at the token level and yield an informative representation. Additionally, we consider external knowledge as an additional input, and background image caption supervision as a regularizing component. Extensive experiments on three widely adopted benchmarks, i.e., Facebook Hateful Memes, Memotion7k and MultiOFF, indicate that our approach competes and in some cases surpasses state-of-the-art. Our code is available on //github.com/ckoutlis/memefier.
Transformers have achieved superior performances in many tasks in natural language processing and computer vision, which also intrigues great interests in the time series community. Among multiple advantages of transformers, the ability to capture long-range dependencies and interactions is especially attractive for time series modeling, leading to exciting progress in various time series applications. In this paper, we systematically review transformer schemes for time series modeling by highlighting their strengths as well as limitations through a new taxonomy to summarize existing time series transformers in two perspectives. From the perspective of network modifications, we summarize the adaptations of module level and architecture level of the time series transformers. From the perspective of applications, we categorize time series transformers based on common tasks including forecasting, anomaly detection, and classification. Empirically, we perform robust analysis, model size analysis, and seasonal-trend decomposition analysis to study how Transformers perform in time series. Finally, we discuss and suggest future directions to provide useful research guidance. To the best of our knowledge, this paper is the first work to comprehensively and systematically summarize the recent advances of Transformers for modeling time series data. We hope this survey will ignite further research interests in time series Transformers.
Temporal relational modeling in video is essential for human action understanding, such as action recognition and action segmentation. Although Graph Convolution Networks (GCNs) have shown promising advantages in relation reasoning on many tasks, it is still a challenge to apply graph convolution networks on long video sequences effectively. The main reason is that large number of nodes (i.e., video frames) makes GCNs hard to capture and model temporal relations in videos. To tackle this problem, in this paper, we introduce an effective GCN module, Dilated Temporal Graph Reasoning Module (DTGRM), designed to model temporal relations and dependencies between video frames at various time spans. In particular, we capture and model temporal relations via constructing multi-level dilated temporal graphs where the nodes represent frames from different moments in video. Moreover, to enhance temporal reasoning ability of the proposed model, an auxiliary self-supervised task is proposed to encourage the dilated temporal graph reasoning module to find and correct wrong temporal relations in videos. Our DTGRM model outperforms state-of-the-art action segmentation models on three challenging datasets: 50Salads, Georgia Tech Egocentric Activities (GTEA), and the Breakfast dataset. The code is available at //github.com/redwang/DTGRM.
The goal of text ranking is to generate an ordered list of texts retrieved from a corpus in response to a query. Although the most common formulation of text ranking is search, instances of the task can also be found in many natural language processing applications. This survey provides an overview of text ranking with neural network architectures known as transformers, of which BERT is the best-known example. The combination of transformers and self-supervised pretraining has, without exaggeration, revolutionized the fields of natural language processing (NLP), information retrieval (IR), and beyond. In this survey, we provide a synthesis of existing work as a single point of entry for practitioners who wish to gain a better understanding of how to apply transformers to text ranking problems and researchers who wish to pursue work in this area. We cover a wide range of modern techniques, grouped into two high-level categories: transformer models that perform reranking in multi-stage ranking architectures and learned dense representations that attempt to perform ranking directly. There are two themes that pervade our survey: techniques for handling long documents, beyond the typical sentence-by-sentence processing approaches used in NLP, and techniques for addressing the tradeoff between effectiveness (result quality) and efficiency (query latency). Although transformer architectures and pretraining techniques are recent innovations, many aspects of how they are applied to text ranking are relatively well understood and represent mature techniques. However, there remain many open research questions, and thus in addition to laying out the foundations of pretrained transformers for text ranking, this survey also attempts to prognosticate where the field is heading.
Deep learning techniques have received much attention in the area of image denoising. However, there are substantial differences in the various types of deep learning methods dealing with image denoising. Specifically, discriminative learning based on deep learning can ably address the issue of Gaussian noise. Optimization models based on deep learning are effective in estimating the real noise. However, there has thus far been little related research to summarize the different deep learning techniques for image denoising. In this paper, we offer a comparative study of deep techniques in image denoising. We first classify the deep convolutional neural networks (CNNs) for additive white noisy images; the deep CNNs for real noisy images; the deep CNNs for blind denoising and the deep CNNs for hybrid noisy images, which represents the combination of noisy, blurred and low-resolution images. Then, we analyze the motivations and principles of the different types of deep learning methods. Next, we compare the state-of-the-art methods on public denoising datasets in terms of quantitative and qualitative analysis. Finally, we point out some potential challenges and directions of future research.
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