Here we present a structural similarity index measure (SSIM) guided conditional Generative Adversarial Network (cGAN) that generatively performs image-to-image (i2i) synthesis to generate photo-accurate protein channels in multiplexed spatial proteomics images. This approach can be utilized to accurately generate missing spatial proteomics channels that were not included during experimental data collection either at the bench or the clinic. Experimental spatial proteomic data from the Human BioMolecular Atlas Program (HuBMAP) was used to generate spatial representations of missing proteins through a U-Net based image synthesis pipeline. HuBMAP channels were hierarchically clustered by the (SSIM) as a heuristic to obtain the minimal set needed to recapitulate the underlying biology represented by the spatial landscape of proteins. We subsequently prove that our SSIM based architecture allows for scaling of generative image synthesis to slides with up to 100 channels, which is better than current state of the art algorithms which are limited to data with 11 channels. We validate these claims by generating a new experimental spatial proteomics data set from human lung adenocarcinoma tissue sections and show that a model trained on HuBMAP can accurately synthesize channels from our new data set. The ability to recapitulate experimental data from sparsely stained multiplexed histological slides containing spatial proteomic will have tremendous impact on medical diagnostics and drug development, and also raises important questions on the medical ethics of utilizing data produced by generative image synthesis in the clinical setting. The algorithm that we present in this paper will allow researchers and clinicians to save time and costs in proteomics based histological staining while also increasing the amount of data that they can generate through their experiments.
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Benefiting from the sequence-level knowledge distillation, the Non-Autoregressive Transformer (NAT) achieves great success in neural machine translation tasks. However, existing knowledge distillation has side effects, such as propagating errors from the teacher to NAT students, which may limit further improvements of NAT models and are rarely discussed in existing research. In this paper, we introduce selective knowledge distillation by introducing an NAT evaluator to select NAT-friendly targets that are of high quality and easy to learn. In addition, we introduce a simple yet effective progressive distillation method to boost NAT performance. Experiment results on multiple WMT language directions and several representative NAT models show that our approach can realize a flexible trade-off between the quality and complexity of training data for NAT models, achieving strong performances. Further analysis shows that distilling only 5% of the raw translations can help an NAT outperform its counterpart trained on raw data by about 2.4 BLEU.
The current work investigates the capability of Large language models (LLMs) that are explicitly trained on large corpuses of medical knowledge (Med-PaLM 2) to predict psychiatric functioning from patient interviews and clinical descriptions without being trained to do so. To assess this, n = 145 depression and n =115 PTSD assessments and n = 46 clinical case studies across high prevalence/high comorbidity disorders (Depressive, Anxiety, Psychotic, trauma and stress, Addictive disorders) were analyzed using prompts to extract estimated clinical scores and diagnoses. Results demonstrate that Med-PaLM 2 is capable of assessing psychiatric functioning across a range of psychiatric conditions with the strongest performance being the prediction of depression scores based on standardized assessments (Accuracy range= 0.80 - 0.84) which were statistically indistinguishable from human clinical raters t(1,144) = 1.20; p = 0.23. Results show the potential for general clinical language models to flexibly predict psychiatric risk based on free descriptions of functioning from both patients and clinicians.
Feature selection could be defined as an optimization problem and solved by bio-inspired algorithms. Bees Algorithm (BA) shows decent performance in feature selection optimization tasks. On the other hand, Local Phase Quantization (LPQ) is a frequency domain feature which has excellent performance on Depth images. Here, after extracting LPQ features out of RGB (colour) and Depth images from the Iranian Kinect Face Database (IKFDB), the Bees feature selection algorithm applies to select the desired number of features for final classification tasks. IKFDB is recorded with Kinect sensor V.2 and contains colour and depth images for facial and facial micro-expressions recognition purposes. Here five facial expressions of Anger, Joy, Surprise, Disgust and Fear are used for final validation. The proposed Bees LPQ method is compared with Particle Swarm Optimization (PSO) LPQ, PCA LPQ, Lasso LPQ, and just LPQ features for classification tasks with Support Vector Machines (SVM), K-Nearest Neighbourhood (KNN), Shallow Neural Network and Ensemble Subspace KNN. Returned results, show a decent performance of the proposed algorithm (99 % accuracy) in comparison with others.
Recent advances in the performance of large language models (LLMs) have sparked debate over whether, given sufficient training, high-level human abilities emerge in such generic forms of artificial intelligence (AI). Despite the exceptional performance of LLMs on a wide range of tasks involving natural language processing and reasoning, there has been sharp disagreement as to whether their abilities extend to more creative human abilities. A core example is the ability to interpret novel metaphors. Given the enormous and non-curated text corpora used to train LLMs, a serious obstacle to designing tests is the requirement of finding novel yet high-quality metaphors that are unlikely to have been included in the training data. Here we assessed the ability of GPT-4, a state-of-the-art large language model, to provide natural-language interpretations of novel literary metaphors drawn from Serbian poetry and translated into English. Despite exhibiting no signs of having been exposed to these metaphors previously, the AI system consistently produced detailed and incisive interpretations. Human judge - blind to the fact that an AI model was involved - rated metaphor interpretations generated by GPT-4 as superior to those provided by a group of college students. In interpreting reversed metaphors, GPT-4, as well as humans, exhibited signs of sensitivity to the Gricean cooperative principle. These results indicate that LLMs such as GPT-4 have acquired an emergent ability to interpret complex novel metaphors.
We equip a smaller Language Model to generalise to answering challenging compositional questions that have not been seen in training. To do so we propose a combination of multitask supervised pretraining on up to 93 tasks designed to instill diverse reasoning abilities, and a dense retrieval system that aims to retrieve a set of evidential paragraph fragments. Recent progress in question-answering has been achieved either through prompting methods against very large pretrained Language Models in zero or few-shot fashion, or by fine-tuning smaller models, sometimes in conjunction with information retrieval. We focus on the less explored question of the extent to which zero-shot generalisation can be enabled in smaller models with retrieval against a corpus within which sufficient information to answer a particular question may not exist. We establish strong baselines in this setting for diverse evaluation datasets (StrategyQA, CommonsenseQA, IIRC, DROP, Musique and ARC-DA), and show that performance can be significantly improved by adding retrieval-augmented training datasets which are designed to expose our models to a variety of heuristic reasoning strategies such as weighing partial evidence or ignoring an irrelevant context.
Large Language Models (LLMs) have made remarkable advancements in the field of natural language processing. However, their increasing size poses challenges in terms of computational cost. On the other hand, Small Language Models (SLMs) are known for their efficiency, but they often struggle with limited capacity and training data, especially in specific domains. In this paper, we introduce a novel method aimed at improving SLMs in the medical domain using LLM-based generative data augmentation. The objective of our approach is to develop more efficient and capable models that are specifically tailored for specialized applications. Through experiments conducted on the PubMedQA dataset, we demonstrate the effectiveness of LLMs in refining and diversifying existing question-answer pairs. This refinement process leads to improved performance in a significantly smaller model after fine-tuning. Notably, our best SLM, with under 1.6 billion parameters, outperforms the few-shot GPT-4 on the PubMedQA dataset. Our code and generated data are publicly available to facilitate further explorations.
This work investigates the use of a Deep Neural Network (DNN) to perform an estimation of the Weapon Engagement Zone (WEZ) maximum launch range. The WEZ allows the pilot to identify an airspace in which the available missile has a more significant probability of successfully engaging a particular target, i.e., a hypothetical area surrounding an aircraft in which an adversary is vulnerable to a shot. We propose an approach to determine the WEZ of a given missile using 50,000 simulated launches in variate conditions. These simulations are used to train a DNN that can predict the WEZ when the aircraft finds itself on different firing conditions, with a coefficient of determination of 0.99. It provides another procedure concerning preceding research since it employs a non-discretized model, i.e., it considers all directions of the WEZ at once, which has not been done previously. Additionally, the proposed method uses an experimental design that allows for fewer simulation runs, providing faster model training.
Recent contrastive representation learning methods rely on estimating mutual information (MI) between multiple views of an underlying context. E.g., we can derive multiple views of a given image by applying data augmentation, or we can split a sequence into views comprising the past and future of some step in the sequence. Contrastive lower bounds on MI are easy to optimize, but have a strong underestimation bias when estimating large amounts of MI. We propose decomposing the full MI estimation problem into a sum of smaller estimation problems by splitting one of the views into progressively more informed subviews and by applying the chain rule on MI between the decomposed views. This expression contains a sum of unconditional and conditional MI terms, each measuring modest chunks of the total MI, which facilitates approximation via contrastive bounds. To maximize the sum, we formulate a contrastive lower bound on the conditional MI which can be approximated efficiently. We refer to our general approach as Decomposed Estimation of Mutual Information (DEMI). We show that DEMI can capture a larger amount of MI than standard non-decomposed contrastive bounds in a synthetic setting, and learns better representations in a vision domain and for dialogue generation.
In this paper, we propose a novel Feature Decomposition and Reconstruction Learning (FDRL) method for effective facial expression recognition. We view the expression information as the combination of the shared information (expression similarities) across different expressions and the unique information (expression-specific variations) for each expression. More specifically, FDRL mainly consists of two crucial networks: a Feature Decomposition Network (FDN) and a Feature Reconstruction Network (FRN). In particular, FDN first decomposes the basic features extracted from a backbone network into a set of facial action-aware latent features to model expression similarities. Then, FRN captures the intra-feature and inter-feature relationships for latent features to characterize expression-specific variations, and reconstructs the expression feature. To this end, two modules including an intra-feature relation modeling module and an inter-feature relation modeling module are developed in FRN. Experimental results on both the in-the-lab databases (including CK+, MMI, and Oulu-CASIA) and the in-the-wild databases (including RAF-DB and SFEW) show that the proposed FDRL method consistently achieves higher recognition accuracy than several state-of-the-art methods. This clearly highlights the benefit of feature decomposition and reconstruction for classifying expressions.
How can we estimate the importance of nodes in a knowledge graph (KG)? A KG is a multi-relational graph that has proven valuable for many tasks including question answering and semantic search. In this paper, we present GENI, a method for tackling the problem of estimating node importance in KGs, which enables several downstream applications such as item recommendation and resource allocation. While a number of approaches have been developed to address this problem for general graphs, they do not fully utilize information available in KGs, or lack flexibility needed to model complex relationship between entities and their importance. To address these limitations, we explore supervised machine learning algorithms. In particular, building upon recent advancement of graph neural networks (GNNs), we develop GENI, a GNN-based method designed to deal with distinctive challenges involved with predicting node importance in KGs. Our method performs an aggregation of importance scores instead of aggregating node embeddings via predicate-aware attention mechanism and flexible centrality adjustment. In our evaluation of GENI and existing methods on predicting node importance in real-world KGs with different characteristics, GENI achieves 5-17% higher NDCG@100 than the state of the art.
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