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In this article, we focus on the error that is committed when computing the matrix logarithm using the Gauss--Legendre quadrature rules. These formulas can be interpreted as Pad\'e approximants of a suitable Gauss hypergeometric function. Empirical observation tells us that the convergence of these quadratures becomes slow when the matrix is not close to the identity matrix, thus suggesting the usage of an inverse scaling and squaring approach for obtaining a matrix with this property. The novelty of this work is the introduction of error estimates that can be used to select a priori both the number of Legendre points needed to obtain a given accuracy and the number of inverse scaling and squaring to be performed. We include some numerical experiments to show the reliability of the estimates introduced.

Nonignorable missing outcomes are common in real world datasets and often require strong parametric assumptions to achieve identification. These assumptions can be implausible or untestable, and so we may forgo them in favour of partially identified models that narrow the set of a priori possible values to an identification region. Here we propose a new nonparametric Bayes method that allows for the incorporation of multiple clinically relevant restrictions of the parameter space simultaneously. We focus on two common restrictions, instrumental variables and the direction of missing data bias, and investigate how these restrictions narrow the identification region for parameters of interest. Additionally, we propose a rejection sampling algorithm that allows us to quantify the evidence for these assumptions in the data. We compare our method to a standard Heckman selection model in both simulation studies and in an applied problem examining the effectiveness of cash-transfers for people experiencing homelessness.

We provide a new characterization of both belief update and belief revision in terms of a Kripke-Lewis semantics. We consider frames consisting of a set of states, a Kripke belief relation and a Lewis selection function. Adding a valuation to a frame yields a model. Given a model and a state, we identify the initial belief set K with the set of formulas that are believed at that state and we identify either the updated belief set or the revised belief set, prompted by the input represented by formula A, as the set of formulas that are the consequent of conditionals that (1) are believed at that state and (2) have A as antecedent. We show that this class of models characterizes both the Katsuno-Mendelzon (KM) belief update functions and the AGM belief revision functions, in the following sense: (1) each model gives rise to a partial belief function that can be completed into a full KM/AGM update/revision function, and (2) for every KM/AGM update/revision function there is a model whose associated belief function coincides with it. The difference between update and revision can be reduced to two semantic properties that appear in a stronger form in revision relative to update, thus confirming the finding by Peppas et al. (1996) that, "for a fixed theory K, revising K is much the same as updating K"

In this paper, I present three closed-form approximations of the two-sample Pearson Bayes factor. The techniques rely on some classical asymptotic results about gamma functions. These approximations permit simple closed-form calculation of the Pearson Bayes factor in cases where only the summary statistics are available (i.e., the t-score and degrees of freedom).

Over the last decade, approximating functions in infinite dimensions from samples has gained increasing attention in computational science and engineering, especially in computational uncertainty quantification. This is primarily due to the relevance of functions that are solutions to parametric differential equations in various fields, e.g. chemistry, economics, engineering, and physics. While acquiring accurate and reliable approximations of such functions is inherently difficult, current benchmark methods exploit the fact that such functions often belong to certain classes of holomorphic functions to get algebraic convergence rates in infinite dimensions with respect to the number of (potentially adaptive) samples $m$. Our work focuses on providing theoretical approximation guarantees for the class of $(\boldsymbol{b},\varepsilon)$-holomorphic functions, demonstrating that these algebraic rates are the best possible for Banach-valued functions in infinite dimensions. We establish lower bounds using a reduction to a discrete problem in combination with the theory of $m$-widths, Gelfand widths and Kolmogorov widths. We study two cases, known and unknown anisotropy, in which the relative importance of the variables is known and unknown, respectively. A key conclusion of our paper is that in the latter setting, approximation from finite samples is impossible without some inherent ordering of the variables, even if the samples are chosen adaptively. Finally, in both cases, we demonstrate near-optimal, non-adaptive (random) sampling and recovery strategies which achieve close to same rates as the lower bounds.

The supersingular Endomorphism Ring problem is the following: given a supersingular elliptic curve, compute all of its endomorphisms. The presumed hardness of this problem is foundational for isogeny-based cryptography. The One Endomorphism problem only asks to find a single non-scalar endomorphism. We prove that these two problems are equivalent, under probabilistic polynomial time reductions. We prove a number of consequences. First, assuming the hardness of the endomorphism ring problem, the Charles--Goren--Lauter hash function is collision resistant, and the SQIsign identification protocol is sound. Second, the endomorphism ring problem is equivalent to the problem of computing arbitrary isogenies between supersingular elliptic curves, a result previously known only for isogenies of smooth degree. Third, there exists an unconditional probabilistic algorithm to solve the endomorphism ring problem in time O~(sqrt(p)), a result that previously required to assume the generalized Riemann hypothesis. To prove our main result, we introduce a flexible framework for the study of isogeny graphs with additional information. We prove a general and easy-to-use rapid mixing theorem. The proof of this result goes via an augmented Deuring correspondence and the Jacquet-Langlands correspondence.

We consider a new splitting based on the Sherman-Morrison-Woodbury formula, which is particularly effective with iterative methods for the numerical solution of large linear systems. These systems involve matrices that are perturbations of circulant or block circulant matrices, which commonly arise in the discretization of differential equations using finite element or finite difference methods. We prove the convergence of the new iteration without making any assumptions regarding the symmetry or diagonal-dominance of the matrix. To illustrate the efficacy of the new iteration we present various applications. These include extensions of the new iteration to block matrices that arise in certain saddle point problems as well as two-dimensional finite difference discretizations. The new method exhibits fast convergence in all of the test cases we used. It has minimal storage requirements, straightforward implementation and compatibility with nearly circulant matrices via the Fast Fourier Transform. For this reasons it can be a valuable tool for the solution of various finite element and finite difference discretizations of differential equations.

Identifying replicable signals across different studies provides stronger scientific evidence and more powerful inference. Existing literature on high dimensional applicability analysis either imposes strong modeling assumptions or has low power. We develop a powerful and robust empirical Bayes approach for high dimensional replicability analysis. Our method effectively borrows information from different features and studies while accounting for heterogeneity. We show that the proposed method has better power than competing methods while controlling the false discovery rate, both empirically and theoretically. Analyzing datasets from the genome-wide association studies reveals new biological insights that otherwise cannot be obtained by using existing methods.

This article proposes entropy stable discontinuous Galerkin schemes (DG) for two-fluid relativistic plasma flow equations. These equations couple the flow of relativistic fluids via electromagnetic quantities evolved using Maxwell's equations. The proposed schemes are based on the Gauss-Lobatto quadrature rule, which has the summation by parts (SBP) property. We exploit the structure of the equations having the flux with three independent parts coupled via nonlinear source terms. We design entropy stable DG schemes for each flux part, coupled with the fact that the source terms do not affect entropy, resulting in an entropy stable scheme for the complete system. The proposed schemes are then tested on various test problems in one and two dimensions to demonstrate their accuracy and stability.

Stiff systems of ordinary differential equations (ODEs) and sparse training data are common in scientific problems. This paper describes efficient, implicit, vectorized methods for integrating stiff systems of ordinary differential equations through time and calculating parameter gradients with the adjoint method. The main innovation is to vectorize the problem both over the number of independent times series and over a batch or "chunk" of sequential time steps, effectively vectorizing the assembly of the implicit system of ODEs. The block-bidiagonal structure of the linearized implicit system for the backward Euler method allows for further vectorization using parallel cyclic reduction (PCR). Vectorizing over both axes of the input data provides a higher bandwidth of calculations to the computing device, allowing even problems with comparatively sparse data to fully utilize modern GPUs and achieving speed ups of greater than 100x, compared to standard, sequential time integration. We demonstrate the advantages of implicit, vectorized time integration with several example problems, drawn from both analytical stiff and non-stiff ODE models as well as neural ODE models. We also describe and provide a freely available open-source implementation of the methods developed here.