Deep learning models have become widely adopted in various domains, but their performance heavily relies on a vast amount of data. Datasets often contain a large number of irrelevant or redundant samples, which can lead to computational inefficiencies during the training. In this work, we introduce, for the first time in the context of the audio domain, the k-means clustering as a method for efficient data pruning. K-means clustering provides a way to group similar samples together, allowing the reduction of the size of the dataset while preserving its representative characteristics. As an example, we perform clustering analysis on the keyword spotting (KWS) dataset. We discuss how k-means clustering can significantly reduce the size of audio datasets while maintaining the classification performance across neural networks (NNs) with different architectures. We further comment on the role of scaling analysis in identifying the optimal pruning strategies for a large number of samples. Our studies serve as a proof-of-principle, demonstrating the potential of data selection with distance-based clustering algorithms for the audio domain and highlighting promising research avenues.
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Batch effects are pervasive in biomedical studies. One approach to address the batch effects is repeatedly measuring a subset of samples in each batch. These remeasured samples are used to estimate and correct the batch effects. However, rigorous statistical methods for batch effect correction with remeasured samples are severely under-developed. In this study, we developed a framework for batch effect correction using remeasured samples in highly confounded case-control studies. We provided theoretical analyses of the proposed procedure, evaluated its power characteristics, and provided a power calculation tool to aid in the study design. We found that the number of samples that need to be remeasured depends strongly on the between-batch correlation. When the correlation is high, remeasuring a small subset of samples is possible to rescue most of the power.
Imaging through perturbed multimode fibres based on deep learning has been widely researched. However, existing methods mainly use target-speckle pairs in different configurations. It is challenging to reconstruct targets without trained networks. In this paper, we propose a physics-assisted, unsupervised, learning-based fibre imaging scheme. The role of the physical prior is to simplify the mapping relationship between the speckle pattern and the target image, thereby reducing the computational complexity. The unsupervised network learns target features according to the optimized direction provided by the physical prior. Therefore, the reconstruction process of the online learning only requires a few speckle patterns and unpaired targets. The proposed scheme also increases the generalization ability of the learning-based method in perturbed multimode fibres. Our scheme has the potential to extend the application of multimode fibre imaging.
We propose a data-driven approach to explicitly learn the progressive encoding of a continuous source, which is successively decoded with increasing levels of quality and with the aid of correlated side information. This setup refers to the successive refinement of the Wyner-Ziv coding problem. Assuming ideal Slepian-Wolf coding, our approach employs recurrent neural networks (RNNs) to learn layered encoders and decoders for the quadratic Gaussian case. The models are trained by minimizing a variational bound on the rate-distortion function of the successively refined Wyner-Ziv coding problem. We demonstrate that RNNs can explicitly retrieve layered binning solutions akin to scalable nested quantization. Moreover, the rate-distortion performance of the scheme is on par with the corresponding monolithic Wyner-Ziv coding approach and is close to the rate-distortion bound.
In modern computational materials science, deep learning has shown the capability to predict interatomic potentials, thereby supporting and accelerating conventional simulations. However, existing models typically sacrifice either accuracy or efficiency. Moreover, lightweight models are highly demanded for offering simulating systems on a considerably larger scale at reduced computational costs. A century ago, Felix Bloch demonstrated how leveraging the equivariance of the translation operation on a crystal lattice (with geometric symmetry) could significantly reduce the computational cost of determining wavefunctions and accurately calculate material properties. Here, we introduce a lightweight equivariant interaction graph neural network (LEIGNN) that can enable accurate and efficient interatomic potential and force predictions in crystals. Rather than relying on higher-order representations, LEIGNN employs a scalar-vector dual representation to encode equivariant features. By extracting both local and global structures from vector representations and learning geometric symmetry information, our model remains lightweight while ensuring prediction accuracy and robustness through the equivariance. Our results show that LEIGNN consistently outperforms the prediction performance of the representative baselines and achieves significant efficiency across diverse datasets, which include catalysts, molecules, and organic isomers. Finally, to further validate the predicted interatomic potentials from our model, we conduct classical molecular dynamics (MD) and ab initio MD simulation across various systems, including solid, liquid, and gas. It is found that LEIGNN can achieve the accuracy of ab initio MD and retain the computational efficiency of classical MD across all examined systems, demonstrating its accuracy, efficiency, and universality.
Transfer learning has become an essential technique to exploit information from the source domain to boost performance of the target task. Despite the prevalence in high-dimensional data, heterogeneity and heavy tails are insufficiently accounted for by current transfer learning approaches and thus may undermine the resulting performance. We propose a transfer learning procedure in the framework of high-dimensional quantile regression models to accommodate heterogeneity and heavy tails in the source and target domains. We establish error bounds of transfer learning estimator based on delicately selected transferable source domains, showing that lower error bounds can be achieved for critical selection criterion and larger sample size of source tasks. We further propose valid confidence interval and hypothesis test procedures for individual component of high-dimensional quantile regression coefficients by advocating a double transfer learning estimator, which is one-step debiased estimator for the transfer learning estimator wherein the technique of transfer learning is designed again. By adopting data-splitting technique, we advocate a transferability detection approach that guarantees to circumvent negative transfer and identify transferable sources with high probability. Simulation results demonstrate that the proposed method exhibits some favorable and compelling performances and the practical utility is further illustrated by analyzing a real example.
Self-training has proven to be an effective approach for cross-domain tasks, and in this study, we explore its application to cross-domain constituency parsing. Traditional self-training methods rely on limited and potentially low-quality raw corpora. To overcome this limitation, we propose enhancing self-training with the large language model (LLM) to generate domain-specific raw corpora iteratively. For the constituency parsing, we introduce grammar rules that guide the LLM in generating raw corpora and establish criteria for selecting pseudo instances. Our experimental results demonstrate that self-training for constituency parsing, equipped with an LLM, outperforms traditional methods regardless of the LLM's performance. Moreover, the combination of grammar rules and confidence criteria for pseudo-data selection yields the highest performance in the cross-domain constituency parsing.
We establish conditions under which latent causal graphs are nonparametrically identifiable and can be reconstructed from unknown interventions in the latent space. Our primary focus is the identification of the latent structure in measurement models without parametric assumptions such as linearity or Gaussianity. Moreover, we do not assume the number of hidden variables is known, and we show that at most one unknown intervention per hidden variable is needed. This extends a recent line of work on learning causal representations from observations and interventions. The proofs are constructive and introduce two new graphical concepts -- imaginary subsets and isolated edges -- that may be useful in their own right. As a matter of independent interest, the proofs also involve a novel characterization of the limits of edge orientations within the equivalence class of DAGs induced by unknown interventions. These are the first results to characterize the conditions under which causal representations are identifiable without making any parametric assumptions in a general setting with unknown interventions and without faithfulness.
Ising solvers offer a promising physics-based approach to tackle the challenging class of combinatorial optimization problems. However, typical solvers operate in a quadratic energy space, having only pair-wise coupling elements which already dominate area and energy. We show that such quadratization can cause severe problems: increased dimensionality, a rugged search landscape, and misalignment with the original objective function. Here, we design and quantify a higher-order Hopfield optimization solver, with 28nm CMOS technology and memristive couplings for lower area and energy computations. We combine algorithmic and circuit analysis to show quantitative advantages over quadratic Ising Machines (IM)s, yielding 48x and 72x reduction in time-to-solution (TTS) and energy-to-solution (ETS) respectively for Boolean satisfiability problems of 150 variables, with favorable scaling.
Stochastic filtering is a vibrant area of research in both control theory and statistics, with broad applications in many scientific fields. Despite its extensive historical development, there still lacks an effective method for joint parameter-state estimation in SDEs. The state-of-the-art particle filtering methods suffer from either sample degeneracy or information loss, with both issues stemming from the dynamics of the particles generated to represent system parameters. This paper provides a novel and effective approach for joint parameter-state estimation in SDEs via Rao-Blackwellization and modularization. Our method operates in two layers: the first layer estimates the system states using a bootstrap particle filter, and the second layer marginalizes out system parameters explicitly. This strategy circumvents the need to generate particles representing system parameters, thereby mitigating their associated problems of sample degeneracy and information loss. Moreover, our method employs a modularization approach when integrating out the parameters, which significantly reduces the computational complexity. All these designs ensure the superior performance of our method. Finally, a numerical example is presented to illustrate that our method outperforms existing approaches by a large margin.
Graph representation learning for hypergraphs can be used to extract patterns among higher-order interactions that are critically important in many real world problems. Current approaches designed for hypergraphs, however, are unable to handle different types of hypergraphs and are typically not generic for various learning tasks. Indeed, models that can predict variable-sized heterogeneous hyperedges have not been available. Here we develop a new self-attention based graph neural network called Hyper-SAGNN applicable to homogeneous and heterogeneous hypergraphs with variable hyperedge sizes. We perform extensive evaluations on multiple datasets, including four benchmark network datasets and two single-cell Hi-C datasets in genomics. We demonstrate that Hyper-SAGNN significantly outperforms the state-of-the-art methods on traditional tasks while also achieving great performance on a new task called outsider identification. Hyper-SAGNN will be useful for graph representation learning to uncover complex higher-order interactions in different applications.
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