Objective: Parallel imaging accelerates the acquisition of magnetic resonance imaging (MRI) data by acquiring additional sensitivity information with an array of receiver coils resulting in reduced phase encoding steps. Compressed sensing magnetic resonance imaging (CS-MRI) has achieved popularity in the field of medical imaging because of its less data requirement than parallel imaging. Parallel imaging and compressed sensing (CS) both speed up traditional MRI acquisition by minimizing the amount of data captured in the k-space. As acquisition time is inversely proportional to the number of samples, the inverse formation of an image from reduced k-space samples leads to faster acquisition but with aliasing artifacts. This paper proposes a novel Generative Adversarial Network (GAN) namely RECGAN-GR supervised with multi-modal losses for de-aliasing the reconstructed image. Methods: In contrast to existing GAN networks, our proposed method introduces a novel generator network namely RemU-Net integrated with dual-domain loss functions including weighted magnitude and phase loss functions along with parallel imaging-based loss i.e., GRAPPA consistency loss. A k-space correction block is proposed as refinement learning to make the GAN network self-resistant to generating unnecessary data which drives the convergence of the reconstruction process faster. Results: Comprehensive results show that the proposed RECGAN-GR achieves a 4 dB improvement in the PSNR among the GAN-based methods and a 2 dB improvement among conventional state-of-the-art CNN methods available in the literature. Conclusion and significance: The proposed work contributes to significant improvement in the image quality for low retained data leading to 5x or 10x faster acquisition.
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In this paper, a convolution sparse coding method based on global structure characteristics and spectral correlation is proposed for the reconstruction of compressive spectral images. The proposed method uses the convolution kernel to operate the global image, which can better preserve image structure information in the spatial dimension. To take full exploration of the constraints between spectra, the coefficients corresponding to the convolution kernel are constrained by the norm to improve spectral accuracy. And, to solve the problem that convolutional sparse coding is insensitive to low frequency, the global total-variation (TV) constraint is added to estimate the low-frequency components. It not only ensures the effective estimation of the low-frequency but also transforms the convolutional sparse coding into a de-noising process, which makes the reconstructing process simpler. Simulations show that compared with the current mainstream optimization methods (DeSCI and Gap-TV), the proposed method improves the reconstruction quality by up to 7 dB in PSNR and 10% in SSIM, and has a great improvement in the details of the reconstructed image.
The miniaturization of inertial measurement units (IMUs) facilitates their widespread use in a growing number of application domains. Orientation estimation is a prerequisite for most further data processing steps in inertial motion tracking, such as position/velocity estimation, joint angle estimation, and 3D visualization. Errors in the estimated orientations severely affect all further processing steps. Recent systematic comparisons of existing algorithms show that out-of-the-box accuracy is often low and that application-specific tuning is required to obtain high accuracy. In the present work, we propose and extensively evaluate a quaternion-based orientation estimation algorithm that is based on a novel approach of filtering the acceleration measurements in an almost-inertial frame and that includes extensions for gyroscope bias estimation and magnetic disturbance rejection, as well as a variant for offline data processing. In contrast to all existing work, we perform an extensive evaluation, using a large collection of publicly available datasets and eight literature methods for comparison. The proposed method consistently outperforms all literature methods and achieves an average RMSE of 2.9{\deg}, while the errors obtained with literature methods range from 5.3{\deg} to 16.7{\deg}. Since the evaluation was performed with one single fixed parametrization across a very diverse dataset collection, we conclude that the proposed method provides unprecedented out-of-the-box performance for a broad range of motions, sensor hardware, and environmental conditions. This gain in orientation estimation accuracy is expected to advance the field of IMU-based motion analysis and provide performance benefits in numerous applications. The provided open-source implementation makes it easy to employ the proposed method.
Photon-efficient imaging with the single-photon light detection and ranging (LiDAR) captures the three-dimensional (3D) structure of a scene by only a few detected signal photons per pixel. However, the existing computational methods for photon-efficient imaging are pre-tuned on a restricted scenario or trained on simulated datasets. When applied to realistic scenarios whose signal-to-background ratios (SBR) and other hardware-specific properties differ from those of the original task, the model performance often significantly deteriorates. In this paper, we present a domain adversarial adaptation design to alleviate this domain shift problem by exploiting unlabeled real-world data, with significant resource savings. This method demonstrates superior performance on simulated and real-world experiments using our home-built up-conversion single-photon imaging system, which provides an efficient approach to bypass the lack of ground-truth depth information in implementing computational imaging algorithms for realistic applications.
Multi-contrast Magnetic Resonance Imaging (MRI) generates multiple medical images with rich and complementary information for routine clinical use; however, it suffers from a long acquisition time. Recent works for accelerating MRI, mainly designed for single contrast, may not be optimal for multi-contrast scenario since the inherent correlations among the multi-contrast images are not exploited. In addition, independent reconstruction of each contrast usually does not translate to optimal performance of downstream tasks. Motivated by these aspects, in this paper we design an end-to-end framework for accelerating multi-contrast MRI which simultaneously optimizes the entire MR imaging workflow including sampling, reconstruction and downstream tasks to achieve the best overall outcomes. The proposed framework consists of a sampling mask generator for each image contrast and a reconstructor exploiting the inter-contrast correlations with a recurrent structure which enables the information sharing in a holistic way. The sampling mask generator and the reconstructor are trained jointly across the multiple image contrasts. The acceleration ratio of each image contrast is also learnable and can be driven by a downstream task performance. We validate our approach on a multi-contrast brain dataset and a multi-contrast knee dataset. Experiments show that (1) our framework consistently outperforms the baselines designed for single contrast on both datasets; (2) our newly designed recurrent reconstruction network effectively improves the reconstruction quality for multi-contrast images; (3) the learnable acceleration ratio improves the downstream task performance significantly. Overall, this work has potentials to open up new avenues for optimizing the entire multi-contrast MR imaging workflow.
Learned regularization for MRI reconstruction can provide complex data-driven priors to inverse problems while still retaining the control and insight of a variational regularization method. Moreover, unsupervised learning, without paired training data, allows the learned regularizer to remain flexible to changes in the forward problem such as noise level, sampling pattern or coil sensitivities. One such approach uses generative models, trained on ground-truth images, as priors for inverse problems, penalizing reconstructions far from images the generator can produce. In this work, we utilize variational autoencoders (VAEs) that generate not only an image but also a covariance uncertainty matrix for each image. The covariance can model changing uncertainty dependencies caused by structure in the image, such as edges or objects, and provides a new distance metric from the manifold of learned images. We demonstrate these novel generative regularizers on radially sub-sampled MRI knee measurements from the fastMRI dataset and compare them to other unlearned, unsupervised and supervised methods. Our results show that the proposed method is competitive with other state-of-the-art methods and behaves consistently with changing sampling patterns and noise levels.
Reconstruction-based methods are widely explored in industrial visual anomaly detection. Such methods commonly require the model to well reconstruct the normal patterns but fail in the anomalies, and thus the anomalies can be detected by evaluating the reconstruction errors. However, in practice, it's usually difficult to control the generalization boundary of the model. The model with an overly strong generalization capability can even well reconstruct the abnormal regions, making them less distinguishable, while the model with a poor generalization capability can not reconstruct those changeable high-frequency components in the normal regions, which ultimately leads to false positives. To tackle the above issue, we propose a new reconstruction network where we reconstruct the original RGB image from its gray value edges (EdgRec). Specifically, this is achieved by an UNet-type denoising autoencoder with skip connections. The input edge and skip connections can well preserve the high-frequency information in the original image. Meanwhile, the proposed restoration task can force the network to memorize the normal low-frequency and color information. Besides, the denoising design can prevent the model from directly copying the original high-frequent components. To evaluate the anomalies, we further propose a new interpretable hand-crafted evaluation function that considers both the color and gradient differences. Our method achieves competitive results on the challenging benchmark MVTec AD (97.8\% for detection and 97.7\% for localization, AUROC). In addition, we conduct experiments on the MVTec 3D-AD dataset and show convincing results using RGB images only. Our code will be available at //github.com/liutongkun/EdgRec.
Detection of out-of-distribution samples is one of the critical tasks for real-world applications of computer vision. The advancement of deep learning has enabled us to analyze real-world data which contain unexplained samples, accentuating the need to detect out-of-distribution instances more than before. GAN-based approaches have been widely used to address this problem due to their ability to perform distribution fitting; however, they are accompanied by training instability and mode collapse. We propose a simple yet efficient reconstruction-based method that avoids adding complexities to compensate for the limitations of GAN models while outperforming them. Unlike previous reconstruction-based works that only utilize reconstruction error or generated samples, our proposed method simultaneously incorporates both of them in the detection task. Our model, which we call "Connective Novelty Detection" has two subnetworks, an autoencoder, and a binary classifier. The autoencoder learns the representation of the positive class by reconstructing them. Then, the model creates negative and connected positive examples using real and generated samples. Negative instances are generated via manipulating the real data, so their distribution is close to the positive class to achieve a more accurate boundary for the classifier. To boost the robustness of the detection to reconstruction error, connected positive samples are created by combining the real and generated samples. Finally, the binary classifier is trained using connected positive and negative examples. We demonstrate a considerable improvement in novelty detection over state-of-the-art methods on MNIST and Caltech-256 datasets.
Data-driven approaches recently achieved remarkable success in medical image reconstruction, but integration into clinical routine remains challenging due to a lack of generalizability and interpretability. Existing approaches usually require high-quality data-image pairs for training, but such data is not easily available for any imaging protocol and the reconstruction quality can quickly degrade even if only minor changes are made to the protocol. In addition, data-driven methods may create artificial features that can influence the clinicians decision-making. This is unacceptable if the clinician is unaware of the uncertainty associated with the reconstruction. In this paper, we address these challenges in a unified framework based on generative image priors. We propose a novel deep neural network based regularizer which is trained in an unsupervised setting on reference images without requiring any data-image pairs. After training, the regularizer can be used as part of a classical variational approach in combination with any acquisition protocols and shows stable behavior even if the test data deviates significantly from the training data. Furthermore, our probabilistic interpretation provides a distribution of reconstructions and hence allows uncertainty quantification. We demonstrate our approach on parallel magnetic resonance imaging, where results show competitive performance with SotA end-to-end deep learning methods, while preserving the flexibility of the acquisition protocol and allowing for uncertainty quantification.
Over the past few years, the rapid development of deep learning technologies for computer vision has greatly promoted the performance of medical image segmentation (MedISeg). However, the recent MedISeg publications usually focus on presentations of the major contributions (e.g., network architectures, training strategies, and loss functions) while unwittingly ignoring some marginal implementation details (also known as "tricks"), leading to a potential problem of the unfair experimental result comparisons. In this paper, we collect a series of MedISeg tricks for different model implementation phases (i.e., pre-training model, data pre-processing, data augmentation, model implementation, model inference, and result post-processing), and experimentally explore the effectiveness of these tricks on the consistent baseline models. Compared to paper-driven surveys that only blandly focus on the advantages and limitation analyses of segmentation models, our work provides a large number of solid experiments and is more technically operable. With the extensive experimental results on both the representative 2D and 3D medical image datasets, we explicitly clarify the effect of these tricks. Moreover, based on the surveyed tricks, we also open-sourced a strong MedISeg repository, where each of its components has the advantage of plug-and-play. We believe that this milestone work not only completes a comprehensive and complementary survey of the state-of-the-art MedISeg approaches, but also offers a practical guide for addressing the future medical image processing challenges including but not limited to small dataset learning, class imbalance learning, multi-modality learning, and domain adaptation. The code has been released at: //github.com/hust-linyi/MedISeg
Deep convolutional neural networks (CNNs) have recently achieved great success in many visual recognition tasks. However, existing deep neural network models are computationally expensive and memory intensive, hindering their deployment in devices with low memory resources or in applications with strict latency requirements. Therefore, a natural thought is to perform model compression and acceleration in deep networks without significantly decreasing the model performance. During the past few years, tremendous progress has been made in this area. In this paper, we survey the recent advanced techniques for compacting and accelerating CNNs model developed. These techniques are roughly categorized into four schemes: parameter pruning and sharing, low-rank factorization, transferred/compact convolutional filters, and knowledge distillation. Methods of parameter pruning and sharing will be described at the beginning, after that the other techniques will be introduced. For each scheme, we provide insightful analysis regarding the performance, related applications, advantages, and drawbacks etc. Then we will go through a few very recent additional successful methods, for example, dynamic capacity networks and stochastic depths networks. After that, we survey the evaluation matrix, the main datasets used for evaluating the model performance and recent benchmarking efforts. Finally, we conclude this paper, discuss remaining challenges and possible directions on this topic.
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