Supervised learning problems with side information in the form of a network arise frequently in applications in genomics, proteomics and neuroscience. For example, in genetic applications, the network side information can accurately capture background biological information on the intricate relations among the relevant genes. In this paper, we initiate a study of Bayes optimal learning in high-dimensional linear regression with network side information. To this end, we first introduce a simple generative model (called the Reg-Graph model) which posits a joint distribution for the supervised data and the observed network through a common set of latent parameters. Next, we introduce an iterative algorithm based on Approximate Message Passing (AMP) which is provably Bayes optimal under very general conditions. In addition, we characterize the limiting mutual information between the latent signal and the data observed, and thus precisely quantify the statistical impact of the network side information. Finally, supporting numerical experiments suggest that the introduced algorithm has excellent performance in finite samples.
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Federated learning for training models over mobile devices is gaining popularity. Current systems for this task exhibit significant trade-offs between model accuracy, privacy guarantee, and device efficiency. For instance, Oort (OSDI 2021) provides excellent accuracy and efficiency but requires a trusted central server. On the other hand, Orchard (OSDI 2020) provides good accuracy and the rigorous guarantee of differential privacy over an untrusted server, but creates huge overhead for the devices. This paper describes Aero, a new federated learning system that significantly improves this trade-off. Aero guarantees good accuracy, differential privacy over an untrusted server, and keeps the device overhead low. The key idea of Aero is to tune system architecture and design to a specific set of popular, federated learning algorithms. This tuning requires novel optimizations and techniques, e.g., a new protocol to securely aggregate updates from devices. An evaluation of Aero demonstrates that it provides comparable accuracy to plain federated learning (without differential privacy), and it improves efficiency (CPU and network) over Orchard by up to $10^5\times$.
Neural networks are powerful tools in various applications, and quantifying their uncertainty is crucial for reliable decision-making. In the deep learning field, the uncertainties are usually categorized into aleatoric (data) and epistemic (model) uncertainty. In this paper, we point out that the existing popular variance attenuation method highly overestimates aleatoric uncertainty. To address this issue, we propose a new estimation method by actively de-noising the observed data \footnote{Source code available at \url{//github.com/wz16/DVA}.}. By conducting a broad range of experiments, we demonstrate that our proposed approach provides a much closer approximation to the actual data uncertainty than the standard method.
We develop a machine learning approach to identifying parameters with steady-state solutions, locating such solutions, and determining their linear stability for systems of ordinary differential equations and dynamical systems with parameters. Our approach begins with the construction of target functions that can be used to identify parameters with steady-state solution and the linear stability of such solutions. We design a parameter-solution neural network (PSNN) that couples a parameter neural network and a solution neural network to approximate the target function, and develop efficient algorithms to train the PSNN and to locate steady-state solutions. We also present a theory of approximation of the target function by our PSNN based on the neural network kernel decomposition. Numerical results are reported to show that our approach is robust in identifying the phase boundaries separating different regions in the parameter space corresponding to no solution or different numbers of solutions and in classifying the stability of solutions. These numerical results also validate our analysis. Although the primary focus in this study centers on steady states of parameterized dynamical systems, our approach is applicable generally to finding solutions for parameterized nonlinear systems of algebraic equations. Some potential improvements and future work are discussed.
Modern machine learning techniques in the natural language processing domain can be used to automatically generate scripts for goal-oriented dialogue systems. The current article presents a general framework for studying the automatic generation of scripts for goal-oriented dialogue systems. A method for preprocessing dialog data sets in JSON format is described. A comparison is made of two methods for extracting user intent based on BERTopic and latent Dirichlet allocation. A comparison has been made of two implemented algorithms for classifying statements of users of a goal-oriented dialogue system based on logistic regression and BERT transformer models. The BERT transformer approach using the bert-base-uncased model showed better results for the three metrics Precision (0.80), F1-score (0.78) and Matthews correlation coefficient (0.74) in comparison with other methods.
Dynamical systems across the sciences, from electrical circuits to ecological networks, undergo qualitative and often catastrophic changes in behavior, called bifurcations, when their underlying parameters cross a threshold. Existing methods predict oncoming catastrophes in individual systems but are primarily time-series-based and struggle both to categorize qualitative dynamical regimes across diverse systems and to generalize to real data. To address this challenge, we propose a data-driven, physically-informed deep-learning framework for classifying dynamical regimes and characterizing bifurcation boundaries based on the extraction of topologically invariant features. We focus on the paradigmatic case of the supercritical Hopf bifurcation, which is used to model periodic dynamics across a wide range of applications. Our convolutional attention method is trained with data augmentations that encourage the learning of topological invariants which can be used to detect bifurcation boundaries in unseen systems and to design models of biological systems like oscillatory gene regulatory networks. We further demonstrate our method's use in analyzing real data by recovering distinct proliferation and differentiation dynamics along pancreatic endocrinogenesis trajectory in gene expression space based on single-cell data. Our method provides valuable insights into the qualitative, long-term behavior of a wide range of dynamical systems, and can detect bifurcations or catastrophic transitions in large-scale physical and biological systems.
The recent success of neural networks in natural language processing has drawn renewed attention to learning sequence-to-sequence (seq2seq) tasks. While there exists a rich literature that studies classification and regression tasks using solvable models of neural networks, seq2seq tasks have not yet been studied from this perspective. Here, we propose a simple model for a seq2seq task that has the advantage of providing explicit control over the degree of memory, or non-Markovianity, in the sequences -- the stochastic switching-Ornstein-Uhlenbeck (SSOU) model. We introduce a measure of non-Markovianity to quantify the amount of memory in the sequences. For a minimal auto-regressive (AR) learning model trained on this task, we identify two learning regimes corresponding to distinct phases in the stationary state of the SSOU process. These phases emerge from the interplay between two different time scales that govern the sequence statistics. Moreover, we observe that while increasing the integration window of the AR model always improves performance, albeit with diminishing returns, increasing the non-Markovianity of the input sequences can improve or degrade its performance. Finally, we perform experiments with recurrent and convolutional neural networks that show that our observations carry over to more complicated neural network architectures.
We study computational aspects of repulsive Gibbs point processes, which are probabilistic models of interacting particles in a finite-volume region of space. We introduce an approach for reducing a Gibbs point process to the hard-core model, a well-studied discrete spin system. Given an instance of such a point process, our reduction generates a random graph drawn from a natural geometric model. We show that the partition function of a hard-core model on graphs generated by the geometric model concentrates around the partition function of the Gibbs point process. Our reduction allows us to use a broad range of algorithms developed for the hard-core model to sample from the Gibbs point process and approximate its partition function. This is, to the extend of our knowledge, the first approach that deals with pair potentials of unbounded range. We compare the resulting algorithms with recently established results and study further properties of the random geometric graphs with respect to the hard-core model.
We derive information-theoretic generalization bounds for supervised learning algorithms based on the information contained in predictions rather than in the output of the training algorithm. These bounds improve over the existing information-theoretic bounds, are applicable to a wider range of algorithms, and solve two key challenges: (a) they give meaningful results for deterministic algorithms and (b) they are significantly easier to estimate. We show experimentally that the proposed bounds closely follow the generalization gap in practical scenarios for deep learning.
Most algorithms for representation learning and link prediction in relational data have been designed for static data. However, the data they are applied to usually evolves with time, such as friend graphs in social networks or user interactions with items in recommender systems. This is also the case for knowledge bases, which contain facts such as (US, has president, B. Obama, [2009-2017]) that are valid only at certain points in time. For the problem of link prediction under temporal constraints, i.e., answering queries such as (US, has president, ?, 2012), we propose a solution inspired by the canonical decomposition of tensors of order 4. We introduce new regularization schemes and present an extension of ComplEx (Trouillon et al., 2016) that achieves state-of-the-art performance. Additionally, we propose a new dataset for knowledge base completion constructed from Wikidata, larger than previous benchmarks by an order of magnitude, as a new reference for evaluating temporal and non-temporal link prediction methods.
Deep learning constitutes a recent, modern technique for image processing and data analysis, with promising results and large potential. As deep learning has been successfully applied in various domains, it has recently entered also the domain of agriculture. In this paper, we perform a survey of 40 research efforts that employ deep learning techniques, applied to various agricultural and food production challenges. We examine the particular agricultural problems under study, the specific models and frameworks employed, the sources, nature and pre-processing of data used, and the overall performance achieved according to the metrics used at each work under study. Moreover, we study comparisons of deep learning with other existing popular techniques, in respect to differences in classification or regression performance. Our findings indicate that deep learning provides high accuracy, outperforming existing commonly used image processing techniques.
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