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Planning a public transit network is a challenging optimization problem, but essential in order to realize the benefits of autonomous buses. We propose a novel algorithm for planning networks of routes for autonomous buses. We first train a graph neural net model as a policy for constructing route networks, and then use the policy as one of several mutation operators in a evolutionary algorithm. We evaluate this algorithm on a standard set of benchmarks for transit network design, and find that it outperforms the learned policy alone by up to 20% and a plain evolutionary algorithm approach by up to 53% on realistic benchmark instances.

Data integration has become increasingly common in aligning multiple heterogeneous datasets. With high-dimensional outcomes, data integration methods aim to extract low-dimensional embeddings of observations to remove unwanted variations, such as batch effects and unmeasured covariates, inherent in data collected from different sources. However, multiple hypothesis testing after data integration can be substantially biased due to the data-dependent integration processes. To address this challenge, we introduce a robust post-integrated inference (PII) method that adjusts for latent heterogeneity using negative control outcomes. By leveraging causal interpretations, we derive nonparametric identification conditions that form the basis of our PII approach. Our assumption-lean semiparametric inference method extends robustness and generality to projected direct effect estimands that account for mediators, confounders, and moderators. These estimands remain statistically meaningful under model misspecifications and with error-prone embeddings. We provide deterministic quantifications of the bias of target estimands induced by estimated embeddings and finite-sample linear expansions of the estimators with uniform concentration bounds on the residuals for all outcomes. The proposed doubly robust estimators are consistent and efficient under minimal assumptions, facilitating data-adaptive estimation with machine learning algorithms. Using random forests, we evaluate empirical statistical errors in simulations and analyze single-cell CRISPR perturbed datasets with potential unmeasured confounders.

We present a new power method to obtain solutions of eigenvalue problems. The method can determine not only the dominant or lowest eigenvalues but also all eigenvalues without the need for a deflation procedure. The method uses a functional of an operator (or a matrix) to select or filter an eigenvalue. The method can freely select a solution by varying a parameter associated to an estimate of the eigenvalue. The convergence of the method is highly dependent on how closely the parameter to the eigenvalues. In this paper, numerical results of the method are shown to be in excellent agreement with the analytical ones.

Continuous-time multistate models are widely used for analyzing interval-censored data on disease progression over time. Sometimes, diseases manifest differently and what appears to be a coherent collection of symptoms is the expression of multiple distinct disease subtypes. To address this complexity, we propose a mixture hidden Markov model, where the observation process encompasses states representing common symptomatic stages across these diseases, and each underlying process corresponds to a distinct disease subtype. Our method models both the overall and the type-specific disease incidence/prevalence accounting for sampling conditions and exactly observed death times. Additionally, it can utilize partially available disease-type information, which offers insights into the pathway through specific hidden states in the disease process, to aid in the estimation. We present both a frequentist and a Bayesian way to obtain the estimates. The finite sample performance is evaluated through simulation studies. We demonstrate our method using the Nun Study and model the development and progression of dementia, encompassing both Alzheimer's disease (AD) and non-AD dementia.

Integrated sensing and communication (ISAC) systems have the issue of secrecy leakage when using the ISAC waveforms for sensing, thus posing a potential risk for eavesdropping. To address this problem, we propose to employ movable antennas (MAs) and reconfigurable intelligent surface (RIS) to enhance the physical layer security (PLS) performance of ISAC systems, where an eavesdropping target potentially wiretaps the signals transmitted by the base station (BS). To evaluate the synergistic performance gain provided by MAs and RIS, we formulate an optimization problem for maximizing the sum-rate of the users by jointly optimizing the transmit/receive beamformers of the BS, the reflection coefficients of the RIS, and the positions of MAs at communication users, subject to a minimum communication rate requirement for each user, a minimum radar sensing requirement, and a maximum secrecy leakage to the eavesdropping target. To solve this non-convex problem with highly coupled variables, a two-layer penalty-based algorithm is developed by updating the penalty parameter in the outer-layer iterations to achieve a trade-off between the optimality and feasibility of the solution. In the inner-layer iterations, the auxiliary variables are first obtained with semi-closed-form solutions using Lagrange duality. Then, the receive beamformer filter at the BS is optimized by solving a Rayleigh-quotient subproblem. Subsequently, the transmit beamformer matrix is obtained by solving a convex subproblem. Finally, the majorization-minimization (MM) algorithm is employed to optimize the RIS reflection coefficients and the positions of MAs. Extensive simulation results validate the considerable benefits of the proposed MAs-aided RIS-ISAC systems in enhancing security performance compared to traditional fixed position antenna (FPA)-based systems.

While there is an immense literature on Bayesian methods for clustering, the multiview case has received little attention. This problem focuses on obtaining distinct but statistically dependent clusterings in a common set of entities for different data types. For example, clustering patients into subgroups with subgroup membership varying according to the domain of the patient variables. A challenge is how to model the across-view dependence between the partitions of patients into subgroups. The complexities of the partition space make standard methods to model dependence, such as correlation, infeasible. In this article, we propose CLustering with Independence Centering (CLIC), a clustering prior that uses a single parameter to explicitly model dependence between clusterings across views. CLIC is induced by the product centered Dirichlet process (PCDP), a novel hierarchical prior that bridges between independent and equivalent partitions. We show appealing theoretic properties, provide a finite approximation and prove its accuracy, present a marginal Gibbs sampler for posterior computation, and derive closed form expressions for the marginal and joint partition distributions for the CLIC model. On synthetic data and in an application to epidemiology, CLIC accurately characterizes view-specific partitions while providing inference on the dependence level.

Aspect level sentiment classification aims to identify the sentiment expressed towards an aspect given a context sentence. Previous neural network based methods largely ignore the syntax structure in one sentence. In this paper, we propose a novel target-dependent graph attention network (TD-GAT) for aspect level sentiment classification, which explicitly utilizes the dependency relationship among words. Using the dependency graph, it propagates sentiment features directly from the syntactic context of an aspect target. In our experiments, we show our method outperforms multiple baselines with GloVe embeddings. We also demonstrate that using BERT representations further substantially boosts the performance.

Collaborative filtering often suffers from sparsity and cold start problems in real recommendation scenarios, therefore, researchers and engineers usually use side information to address the issues and improve the performance of recommender systems. In this paper, we consider knowledge graphs as the source of side information. We propose MKR, a Multi-task feature learning approach for Knowledge graph enhanced Recommendation. MKR is a deep end-to-end framework that utilizes knowledge graph embedding task to assist recommendation task. The two tasks are associated by cross&compress units, which automatically share latent features and learn high-order interactions between items in recommender systems and entities in the knowledge graph. We prove that cross&compress units have sufficient capability of polynomial approximation, and show that MKR is a generalized framework over several representative methods of recommender systems and multi-task learning. Through extensive experiments on real-world datasets, we demonstrate that MKR achieves substantial gains in movie, book, music, and news recommendation, over state-of-the-art baselines. MKR is also shown to be able to maintain a decent performance even if user-item interactions are sparse.

Multi-relation Question Answering is a challenging task, due to the requirement of elaborated analysis on questions and reasoning over multiple fact triples in knowledge base. In this paper, we present a novel model called Interpretable Reasoning Network that employs an interpretable, hop-by-hop reasoning process for question answering. The model dynamically decides which part of an input question should be analyzed at each hop; predicts a relation that corresponds to the current parsed results; utilizes the predicted relation to update the question representation and the state of the reasoning process; and then drives the next-hop reasoning. Experiments show that our model yields state-of-the-art results on two datasets. More interestingly, the model can offer traceable and observable intermediate predictions for reasoning analysis and failure diagnosis, thereby allowing manual manipulation in predicting the final answer.

Distant supervision can effectively label data for relation extraction, but suffers from the noise labeling problem. Recent works mainly perform soft bag-level noise reduction strategies to find the relatively better samples in a sentence bag, which is suboptimal compared with making a hard decision of false positive samples in sentence level. In this paper, we introduce an adversarial learning framework, which we named DSGAN, to learn a sentence-level true-positive generator. Inspired by Generative Adversarial Networks, we regard the positive samples generated by the generator as the negative samples to train the discriminator. The optimal generator is obtained until the discrimination ability of the discriminator has the greatest decline. We adopt the generator to filter distant supervision training dataset and redistribute the false positive instances into the negative set, in which way to provide a cleaned dataset for relation classification. The experimental results show that the proposed strategy significantly improves the performance of distant supervision relation extraction comparing to state-of-the-art systems.