Physics-informed Neural Network (PINN) is one of the most preeminent solvers of Navier-Stokes equations, which are widely used as the governing equation of blood flow. However, current approaches, relying on full Navier-Stokes equations, are impractical for ultrafast Doppler ultrasound, the state-of-the-art technique for depiction of complex blood flow dynamics \emph{in vivo} through acquired thousands of frames (or, timestamps) per second. In this article, we first propose a novel training framework of PINN for solving Navier-Stokes equations by discretizing Navier-Stokes equations into steady state and sequentially solving steady-state Navier-Stokes equations with transfer learning. The novel training framework is coined as SeqPINN. Upon the success of SeqPINN, we adopt the idea of averaged constant stochastic gradient descent (SGD) as initialization and propose a parallel training scheme for all timestamps. To ensure an initialization that generalizes well, we borrow the concept of Stochastic Weight Averaging Gaussian to perform uncertainty estimation as an indicator of generalizability of the initialization. This algorithm, named SP-PINN, further expedites training of PINN while achieving comparable accuracy with SeqPINN. Finite-element simulations and \emph{in vitro} phantoms of single-branch and trifurcate blood vessels are used to evaluate the performance of SeqPINN and SP-PINN. Results show that both SeqPINN and SP-PINN are manyfold faster than the original design of PINN, while respectively achieving Root Mean Square Errors (RMSEs) of 1.01 cm/s and 1.26 cm/s on the straight vessel and 1.91 cm/s and 2.56 cm/s on the trifurcate blood vessel when recovering blood flow velocities.
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Out-of-Distribution (OOD) Generalization aims to learn robust models that generalize well to various environments without fitting to distribution-specific features. Recent studies based on Lottery Ticket Hypothesis (LTH) address this problem by minimizing the learning target to find some of the parameters that are critical to the task. However, in OOD problems, such solutions are suboptimal as the learning task contains severe distribution noises, which can mislead the optimization process. Therefore, apart from finding the task-related parameters (i.e., invariant parameters), we propose Exploring Variant parameters for Invariant Learning (EVIL) which also leverages the distribution knowledge to find the parameters that are sensitive to distribution shift (i.e., variant parameters). Once the variant parameters are left out of invariant learning, a robust subnetwork that is resistant to distribution shift can be found. Additionally, the parameters that are relatively stable across distributions can be considered invariant ones to improve invariant learning. By fully exploring both variant and invariant parameters, our EVIL can effectively identify a robust subnetwork to improve OOD generalization. In extensive experiments on integrated testbed: DomainBed, EVIL can effectively and efficiently enhance many popular methods, such as ERM, IRM, SAM, etc.
Inferring the parameters of ordinary differential equations (ODEs) from noisy observations is an important problem in many scientific fields. Currently, most parameter estimation methods that bypass numerical integration tend to rely on basis functions or Gaussian processes to approximate the ODE solution and its derivatives. Due to the sensitivity of the ODE solution to its derivatives, these methods can be hindered by estimation error, especially when only sparse time-course observations are available. We present a Bayesian collocation framework that operates on the integrated form of the ODEs and also avoids the expensive use of numerical solvers. Our methodology has the capability to handle general nonlinear ODE systems. We demonstrate the accuracy of the proposed method through simulation studies, where the estimated parameters and recovered system trajectories are compared with other recent methods. A real data example is also provided.
Despite their popularity in the field of continuous optimisation, second-order quasi-Newton methods are challenging to apply in machine learning, as the Hessian matrix is intractably large. This computational burden is exacerbated by the need to address non-convexity, for instance by modifying the Hessian's eigenvalues as in Saddle-Free Newton methods. We propose an optimisation algorithm which addresses both of these concerns - to our knowledge, the first efficiently-scalable optimisation algorithm to asymptotically use the exact (eigenvalue-modified) inverse Hessian. Our method frames the problem as a series which principally square-roots and inverts the squared Hessian, then uses it to precondition a gradient vector, all without explicitly computing or eigendecomposing the Hessian. A truncation of this infinite series provides a new optimisation algorithm which is scalable and comparable to other first- and second-order optimisation methods in both runtime and optimisation performance. We demonstrate this in a variety of settings, including a ResNet-18 trained on CIFAR-10.
We consider an equation of multiple variables in which a partial derivative does not vanish at a point. The implicit function theorem provides a local existence and uniqueness of the function for the equation. In this paper, we propose an algorithm to approximate the function by a polynomial without using higher-order differentiability, which depends essentially on integrability. Moreover, we extend the method to a system of equations if the Jacobian determinant does not vanish. This is a robust method for implicit functions that are not differentiable to higher-order. Additionally, we present two numerical experiments to verify the theoretical results.
Chain-of-Thought (CoT) prompting has proven to be effective in enhancing the reasoning capabilities of Large Language Models (LLMs) with at least 100 billion parameters. However, it is ineffective or even detrimental when applied to reasoning tasks in Smaller Language Models (SLMs) with less than 10 billion parameters. To address this limitation, we introduce Dialogue-guided Chain-of-Thought (DialCoT) which employs a dialogue format to generate intermediate reasoning steps, guiding the model toward the final answer. Additionally, we optimize the model's reasoning path selection using the Proximal Policy Optimization (PPO) algorithm, further enhancing its reasoning capabilities. Our method offers several advantages compared to previous approaches. Firstly, we transform the process of solving complex reasoning questions by breaking them down into a series of simpler sub-questions, significantly reducing the task difficulty and making it more suitable for SLMs. Secondly, we optimize the model's reasoning path selection through the PPO algorithm. We conduct comprehensive experiments on four arithmetic reasoning datasets, demonstrating that our method achieves significant performance improvements compared to state-of-the-art competitors.
Fourth order accurate compact schemes for variable coefficient convection-diffusion equations are considered. A sufficient condition for stability of the schemes have been derived using a difference equation based approach. The constant coefficient problems are considered as a special case, and the unconditional stability of compact schemes for such case is proved theoretically. The condition number of the amplification matrix is also analysed, and an estimate for the same is derived. In order to verify the derived conditions numerically, MATLAB codes are provided in Appendix of the manuscript. An example is provided to support the assumption taken to assure stability.
DNA-Encoded Library (DEL) has proven to be a powerful tool that utilizes combinatorially constructed small molecules to facilitate highly-efficient screening assays. These selection experiments, involving multiple stages of washing, elution, and identification of potent binders via unique DNA barcodes, often generate complex data. This complexity can potentially mask the underlying signals, necessitating the application of computational tools such as machine learning to uncover valuable insights. We introduce a compositional deep probabilistic model of DEL data, DEL-Compose, which decomposes molecular representations into their mono-synthon, di-synthon, and tri-synthon building blocks and capitalizes on the inherent hierarchical structure of these molecules by modeling latent reactions between embedded synthons. Additionally, we investigate methods to improve the observation models for DEL count data such as integrating covariate factors to more effectively account for data noise. Across two popular public benchmark datasets (CA-IX and HRP), our model demonstrates strong performance compared to count baselines, enriches the correct pharmacophores, and offers valuable insights via its intrinsic interpretable structure, thereby providing a robust tool for the analysis of DEL data.
Weakly-Supervised Object Detection (WSOD) and Localization (WSOL), i.e., detecting multiple and single instances with bounding boxes in an image using image-level labels, are long-standing and challenging tasks in the CV community. With the success of deep neural networks in object detection, both WSOD and WSOL have received unprecedented attention. Hundreds of WSOD and WSOL methods and numerous techniques have been proposed in the deep learning era. To this end, in this paper, we consider WSOL is a sub-task of WSOD and provide a comprehensive survey of the recent achievements of WSOD. Specifically, we firstly describe the formulation and setting of the WSOD, including the background, challenges, basic framework. Meanwhile, we summarize and analyze all advanced techniques and training tricks for improving detection performance. Then, we introduce the widely-used datasets and evaluation metrics of WSOD. Lastly, we discuss the future directions of WSOD. We believe that these summaries can help pave a way for future research on WSOD and WSOL.
In multi-turn dialog, utterances do not always take the full form of sentences \cite{Carbonell1983DiscoursePA}, which naturally makes understanding the dialog context more difficult. However, it is essential to fully grasp the dialog context to generate a reasonable response. Hence, in this paper, we propose to improve the response generation performance by examining the model's ability to answer a reading comprehension question, where the question is focused on the omitted information in the dialog. Enlightened by the multi-task learning scheme, we propose a joint framework that unifies these two tasks, sharing the same encoder to extract the common and task-invariant features with different decoders to learn task-specific features. To better fusing information from the question and the dialog history in the encoding part, we propose to augment the Transformer architecture with a memory updater, which is designed to selectively store and update the history dialog information so as to support downstream tasks. For the experiment, we employ human annotators to write and examine a large-scale dialog reading comprehension dataset. Extensive experiments are conducted on this dataset, and the results show that the proposed model brings substantial improvements over several strong baselines on both tasks. In this way, we demonstrate that reasoning can indeed help better response generation and vice versa. We release our large-scale dataset for further research.
The problem of Multiple Object Tracking (MOT) consists in following the trajectory of different objects in a sequence, usually a video. In recent years, with the rise of Deep Learning, the algorithms that provide a solution to this problem have benefited from the representational power of deep models. This paper provides a comprehensive survey on works that employ Deep Learning models to solve the task of MOT on single-camera videos. Four main steps in MOT algorithms are identified, and an in-depth review of how Deep Learning was employed in each one of these stages is presented. A complete experimental comparison of the presented works on the three MOTChallenge datasets is also provided, identifying a number of similarities among the top-performing methods and presenting some possible future research directions.
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