We study counterfactual identifiability in causal models with bijective generation mechanisms (BGM), a class that generalizes several widely-used causal models in the literature. We establish their counterfactual identifiability for three common causal structures with unobserved confounding, and propose a practical learning method that casts learning a BGM as structured generative modeling. Learned BGMs enable efficient counterfactual estimation and can be obtained using a variety of deep conditional generative models. We evaluate our techniques in a visual task and demonstrate its application in a real-world video streaming simulation task.
Information technology (IT) systems are vital for modern businesses, handling data storage, communication, and process automation. Monitoring these systems is crucial for their proper functioning and efficiency, as it allows collecting extensive observational time series data for analysis. The interest in causal discovery is growing in IT monitoring systems as knowing causal relations between different components of the IT system helps in reducing downtime, enhancing system performance and identifying root causes of anomalies and incidents. It also allows proactive prediction of future issues through historical data analysis. Despite its potential benefits, applying causal discovery algorithms on IT monitoring data poses challenges, due to the complexity of the data. For instance, IT monitoring data often contains misaligned time series, sleeping time series, timestamp errors and missing values. This paper presents case studies on applying causal discovery algorithms to different IT monitoring datasets, highlighting benefits and ongoing challenges.
This study employs counterfactual explanations to explore "what if?" scenarios in medical research, with the aim of expanding our understanding beyond existing boundaries. Specifically, we focus on utilizing MRI features for diagnosing pediatric posterior fossa brain tumors as a case study. The field of artificial intelligence and explainability has witnessed a growing number of studies and increasing scholarly interest. However, the lack of human-friendly interpretations in explaining the outcomes of machine learning algorithms has significantly hindered the acceptance of these methods by clinicians in their clinical practice. To address this, our approach incorporates counterfactual explanations, providing a novel way to examine alternative decision-making scenarios. These explanations offer personalized and context-specific insights, enabling the validation of predictions and clarification of variations under diverse circumstances. Importantly, our approach maintains both statistical and clinical fidelity, allowing for the examination of distinct tumor features through alternative realities. Additionally, we explore the potential use of counterfactuals for data augmentation and evaluate their feasibility as an alternative approach in medical research. The results demonstrate the promising potential of counterfactual explanations to enhance trust and acceptance of AI-driven methods in clinical settings.
Large language models rely on real-valued representations of text to make their predictions. These representations contain information learned from the data that the model has trained on, including knowledge of linguistic properties and forms of demographic bias, e.g., based on gender. A growing body of work has considered information about concepts such as these using orthogonal projections onto subspaces of the representation space. We contribute to this body of work by proposing a formal definition of intrinsic information in a subspace of a language model's representation space. We propose a counterfactual approach that avoids the failure mode of spurious correlations (Kumar et al., 2022) by treating components in the subspace and its orthogonal complement independently. We show that our counterfactual notion of information in a subspace is optimizing by an causal concept subspace. Furthermore, this intervention allows us to attempt concept controlled generation by manipulating the value of the conceptual component of a representation. Empirically, we find that R-LACE (Ravfogel et al., 2022) returns a one-dimensional subspace containing roughly half of total concept information under our framework. Our causal controlled intervention shows that, for at least one model, the subspace returned by R-LACE can be used to manipulate the concept value of the generated word with precision.
Dynamic structural causal models (SCMs) are a powerful framework for reasoning in dynamic systems about direct effects which measure how a change in one variable affects another variable while holding all other variables constant. The causal relations in a dynamic structural causal model can be qualitatively represented with a full-time causal graph. Assuming linearity and causal sufficiency and given the full-time causal graph, the direct causal effect is always identifiable and can be estimated from data by adjusting on any set of variables given by the so-called single-door criterion. However, in many application such a graph is not available for various reasons but nevertheless experts have access to an abstraction of the full-time causal graph which represents causal relations between time series while omitting temporal information. This paper presents a complete identifiability result which characterizes all cases for which the direct effect is graphically identifiable from summary causal graphs and gives two sound finite adjustment sets that can be used to estimate the direct effect whenever it is identifiable.
Counterfactual examples have emerged as an effective approach to produce simple and understandable post-hoc explanations. In the context of graph classification, previous work has focused on generating counterfactual explanations by manipulating the most elementary units of a graph, i.e., removing an existing edge, or adding a non-existing one. In this paper, we claim that such language of explanation might be too fine-grained, and turn our attention to some of the main characterizing features of real-world complex networks, such as the tendency to close triangles, the existence of recurring motifs, and the organization into dense modules. We thus define a general density-based counterfactual search framework to generate instance-level counterfactual explanations for graph classifiers, which can be instantiated with different notions of dense substructures. In particular, we show two specific instantiations of this general framework: a method that searches for counterfactual graphs by opening or closing triangles, and a method driven by maximal cliques. We also discuss how the general method can be instantiated to exploit any other notion of dense substructures, including, for instance, a given taxonomy of nodes. We evaluate the effectiveness of our approaches in 7 brain network datasets and compare the counterfactual statements generated according to several widely-used metrics. Results confirm that adopting a semantic-relevant unit of change like density is essential to define versatile and interpretable counterfactual explanation methods.
In recent years, Graph Neural Networks have reported outstanding performance in tasks like community detection, molecule classification and link prediction. However, the black-box nature of these models prevents their application in domains like health and finance, where understanding the models' decisions is essential. Counterfactual Explanations (CE) provide these understandings through examples. Moreover, the literature on CE is flourishing with novel explanation methods which are tailored to graph learning. In this survey, we analyse the existing Graph Counterfactual Explanation methods, by providing the reader with an organisation of the literature according to a uniform formal notation for definitions, datasets, and metrics, thus, simplifying potential comparisons w.r.t to the method advantages and disadvantages. We discussed seven methods and sixteen synthetic and real datasets providing details on the possible generation strategies. We highlight the most common evaluation strategies and formalise nine of the metrics used in the literature. We first introduce the evaluation framework GRETEL and how it is possible to extend and use it while providing a further dimension of comparison encompassing reproducibility aspects. Finally, we provide a discussion on how counterfactual explanation interplays with privacy and fairness, before delving into open challenges and future works.
Causal discovery and causal reasoning are classically treated as separate and consecutive tasks: one first infers the causal graph, and then uses it to estimate causal effects of interventions. However, such a two-stage approach is uneconomical, especially in terms of actively collected interventional data, since the causal query of interest may not require a fully-specified causal model. From a Bayesian perspective, it is also unnatural, since a causal query (e.g., the causal graph or some causal effect) can be viewed as a latent quantity subject to posterior inference -- other unobserved quantities that are not of direct interest (e.g., the full causal model) ought to be marginalized out in this process and contribute to our epistemic uncertainty. In this work, we propose Active Bayesian Causal Inference (ABCI), a fully-Bayesian active learning framework for integrated causal discovery and reasoning, which jointly infers a posterior over causal models and queries of interest. In our approach to ABCI, we focus on the class of causally-sufficient, nonlinear additive noise models, which we model using Gaussian processes. We sequentially design experiments that are maximally informative about our target causal query, collect the corresponding interventional data, and update our beliefs to choose the next experiment. Through simulations, we demonstrate that our approach is more data-efficient than several baselines that only focus on learning the full causal graph. This allows us to accurately learn downstream causal queries from fewer samples while providing well-calibrated uncertainty estimates for the quantities of interest.
Structural data well exists in Web applications, such as social networks in social media, citation networks in academic websites, and threads data in online forums. Due to the complex topology, it is difficult to process and make use of the rich information within such data. Graph Neural Networks (GNNs) have shown great advantages on learning representations for structural data. However, the non-transparency of the deep learning models makes it non-trivial to explain and interpret the predictions made by GNNs. Meanwhile, it is also a big challenge to evaluate the GNN explanations, since in many cases, the ground-truth explanations are unavailable. In this paper, we take insights of Counterfactual and Factual (CF^2) reasoning from causal inference theory, to solve both the learning and evaluation problems in explainable GNNs. For generating explanations, we propose a model-agnostic framework by formulating an optimization problem based on both of the two casual perspectives. This distinguishes CF^2 from previous explainable GNNs that only consider one of them. Another contribution of the work is the evaluation of GNN explanations. For quantitatively evaluating the generated explanations without the requirement of ground-truth, we design metrics based on Counterfactual and Factual reasoning to evaluate the necessity and sufficiency of the explanations. Experiments show that no matter ground-truth explanations are available or not, CF^2 generates better explanations than previous state-of-the-art methods on real-world datasets. Moreover, the statistic analysis justifies the correlation between the performance on ground-truth evaluation and our proposed metrics.
This PhD thesis contains several contributions to the field of statistical causal modeling. Statistical causal models are statistical models embedded with causal assumptions that allow for the inference and reasoning about the behavior of stochastic systems affected by external manipulation (interventions). This thesis contributes to the research areas concerning the estimation of causal effects, causal structure learning, and distributionally robust (out-of-distribution generalizing) prediction methods. We present novel and consistent linear and non-linear causal effects estimators in instrumental variable settings that employ data-dependent mean squared prediction error regularization. Our proposed estimators show, in certain settings, mean squared error improvements compared to both canonical and state-of-the-art estimators. We show that recent research on distributionally robust prediction methods has connections to well-studied estimators from econometrics. This connection leads us to prove that general K-class estimators possess distributional robustness properties. We, furthermore, propose a general framework for distributional robustness with respect to intervention-induced distributions. In this framework, we derive sufficient conditions for the identifiability of distributionally robust prediction methods and present impossibility results that show the necessity of several of these conditions. We present a new structure learning method applicable in additive noise models with directed trees as causal graphs. We prove consistency in a vanishing identifiability setup and provide a method for testing substructure hypotheses with asymptotic family-wise error control that remains valid post-selection. Finally, we present heuristic ideas for learning summary graphs of nonlinear time-series models.
We present a novel counterfactual framework for both Zero-Shot Learning (ZSL) and Open-Set Recognition (OSR), whose common challenge is generalizing to the unseen-classes by only training on the seen-classes. Our idea stems from the observation that the generated samples for unseen-classes are often out of the true distribution, which causes severe recognition rate imbalance between the seen-class (high) and unseen-class (low). We show that the key reason is that the generation is not Counterfactual Faithful, and thus we propose a faithful one, whose generation is from the sample-specific counterfactual question: What would the sample look like, if we set its class attribute to a certain class, while keeping its sample attribute unchanged? Thanks to the faithfulness, we can apply the Consistency Rule to perform unseen/seen binary classification, by asking: Would its counterfactual still look like itself? If ``yes'', the sample is from a certain class, and ``no'' otherwise. Through extensive experiments on ZSL and OSR, we demonstrate that our framework effectively mitigates the seen/unseen imbalance and hence significantly improves the overall performance. Note that this framework is orthogonal to existing methods, thus, it can serve as a new baseline to evaluate how ZSL/OSR models generalize. Codes are available at //github.com/yue-zhongqi/gcm-cf.