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Mobile digital health (mHealth) studies often collect multiple within-day self-reported assessments of participants' behaviour and health. Indexed by time of day, these assessments can be treated as functional observations of continuous, truncated, ordinal, and binary type. We develop covariance estimation and principal component analysis for mixed-type functional data like that. We propose a semiparametric Gaussian copula model that assumes a generalized latent non-paranormal process generating observed mixed-type functional data and defining temporal dependence via a latent covariance. The smooth estimate of latent covariance is constructed via Kendall's Tau bridging method that incorporates smoothness within the bridging step. The approach is then extended with methods for handling both dense and sparse sampling designs, calculating subject-specific latent representations of observed data, latent principal components and principal component scores. Importantly, the proposed framework handles all four mixed types in a unified way. Simulation studies show a competitive performance of the proposed method under both dense and sparse sampling designs. The method is applied to data from 497 participants of National Institute of Mental Health Family Study of the Mood Disorder Spectrum to characterize the differences in within-day temporal patterns of mood in individuals with the major mood disorder subtypes including Major Depressive Disorder, and Type 1 and 2 Bipolar Disorder.

Variational Autoencoders and their many variants have displayed impressive ability to perform dimensionality reduction, often achieving state-of-the-art performance. Many current methods however, struggle to learn good representations in High Dimensional, Low Sample Size (HDLSS) tasks, which is an inherently challenging setting. We address this challenge by using an ensemble of lightweight VAEs to learn posteriors over subsets of the feature-space, which get aggregated into a joint posterior in a novel divide-and-conquer approach. Specifically, we present an alternative factorisation of the joint posterior that induces a form of implicit data augmentation that yields greater sample efficiency. Through a series of experiments on eight real-world datasets, we show that our method learns better latent representations in HDLSS settings, which leads to higher accuracy in a downstream classification task. Furthermore, we verify that our approach has a positive effect on disentanglement and achieves a lower estimated Total Correlation on learnt representations. Finally, we show that our approach is robust to partial features at inference, exhibiting little performance degradation even with most features missing.

We propose and analyze an approximate message passing (AMP) algorithm for the matrix tensor product model, which is a generalization of the standard spiked matrix models that allows for multiple types of pairwise observations over a collection of latent variables. A key innovation for this algorithm is a method for optimally weighing and combining multiple estimates in each iteration. Building upon an AMP convergence theorem for non-separable functions, we prove a state evolution for non-separable functions that provides an asymptotically exact description of its performance in the high-dimensional limit. We leverage this state evolution result to provide necessary and sufficient conditions for recovery of the signal of interest. Such conditions depend on the singular values of a linear operator derived from an appropriate generalization of a signal-to-noise ratio for our model. Our results recover as special cases a number of recently proposed methods for contextual models (e.g., covariate assisted clustering) as well as inhomogeneous noise models.

We introduce a sparse estimation in the ordinary kriging for functional data. The functional kriging predicts a feature given as a function at a location where the data are not observed by a linear combination of data observed at other locations. To estimate the weights of the linear combination, we apply the lasso-type regularization in minimizing the expected squared error. We derive an algorithm to derive the estimator using the augmented Lagrange method. Tuning parameters included in the estimation procedure are selected by cross-validation. Since the proposed method can shrink some of the weights of the linear combination toward zeros exactly, we can investigate which locations are necessary or unnecessary to predict the feature. Simulation and real data analysis show that the proposed method appropriately provides reasonable results.

We consider the problem of sequentially optimizing a time-varying objective function using time-varying Bayesian optimization (TVBO). Here, the key challenge is the exploration-exploitation trade-off under time variations. Current approaches to TVBO require prior knowledge of a constant rate of change. However, in practice, the rate of change is usually unknown. We propose an event-triggered algorithm, ET-GP-UCB, that treats the optimization problem as static until it detects changes in the objective function online and then resets the dataset. This allows the algorithm to adapt to realized temporal changes without the need for prior knowledge. The event-trigger is based on probabilistic uniform error bounds used in Gaussian process regression. We provide regret bounds for ET-GP-UCB and show in numerical experiments that it outperforms state-of-the-art algorithms on synthetic and real-world data. Furthermore, these results demonstrate that ET-GP-UCB is readily applicable to various settings without tuning hyperparameters.

In multivariate time series analysis, the coherence measures the linear dependency between two-time series at different frequencies. However, real data applications often exhibit nonlinear dependency in the frequency domain. Conventional coherence analysis fails to capture such dependency. The quantile coherence, on the other hand, characterizes nonlinear dependency by defining the coherence at a set of quantile levels based on trigonometric quantile regression. Although quantile coherence is a more powerful tool, its estimation remains challenging due to the high level of noise. This paper introduces a new estimation technique for quantile coherence. The proposed method is semi-parametric, which uses the parametric form of the spectrum of the vector autoregressive (VAR) model as an approximation to the quantile spectral matrix, along with nonparametric smoothing across quantiles. For each fixed quantile level, we obtain the VAR parameters from the quantile periodograms, then, using the Durbin-Levinson algorithm, we calculate the preliminary estimate of quantile coherence using the VAR parameters. Finally, we smooth the preliminary estimate of quantile coherence across quantiles using a nonparametric smoother. Numerical results show that the proposed estimation method outperforms nonparametric methods. We show that quantile coherence-based bivariate time series clustering has advantages over the ordinary VAR coherence. For applications, the identified clusters of financial stocks by quantile coherence with a market benchmark are shown to have an intriguing and more accurate structure of diversified investment portfolios that may be used by investors to make better decisions.

Unobserved confounding is a fundamental obstacle to establishing valid causal conclusions from observational data. Two complementary types of approaches have been developed to address this obstacle: obtaining identification using fortuitous external aids, such as instrumental variables or proxies, or by means of the ID algorithm, using Markov restrictions on the full data distribution encoded in graphical causal models. In this paper we aim to develop a synthesis of the former and latter approaches to identification in causal inference to yield the most general identification algorithm in multivariate systems currently known -- the proximal ID algorithm. In addition to being able to obtain nonparametric identification in all cases where the ID algorithm succeeds, our approach allows us to systematically exploit proxies to adjust for the presence of unobserved confounders that would have otherwise prevented identification. In addition, we outline a class of estimation strategies for causal parameters identified by our method in an important special case. We illustrate our approach by simulation studies and a data application.

Many real-world decision-making tasks require learning causal relationships between a set of variables. Traditional causal discovery methods, however, require that all variables are observed, which is often not feasible in practical scenarios. Without additional assumptions about the unobserved variables, it is not possible to recover any causal relationships from observational data. Fortunately, in many applied settings, additional structure among the confounders can be expected. In particular, pervasive confounding is commonly encountered and has been utilized for consistent causal estimation in linear causal models. In this paper, we present a provably consistent method to estimate causal relationships in the non-linear, pervasive confounding setting. The core of our procedure relies on the ability to estimate the confounding variation through a simple spectral decomposition of the observed data matrix. We derive a DAG score function based on this insight, prove its consistency in recovering a correct ordering of the DAG, and empirically compare it to previous approaches. We demonstrate improved performance on both simulated and real datasets by explicitly accounting for both confounders and non-linear effects.

We develop a practical way of addressing the Errors-In-Variables (EIV) problem in the Generalized Method of Moments (GMM) framework. We focus on the settings in which the variability of the EIV is a fraction of that of the mismeasured variables, which is typical for empirical applications. For any initial set of moment conditions our approach provides a corrected set of moment conditions that are robust to the EIV. We show that the GMM estimator based on these moments is root-n-consistent, with the standard tests and confidence intervals providing valid inference. This is true even when the EIV are so large that naive estimators (that ignore the EIV problem) may be heavily biased with the confidence intervals having 0% coverage. Our approach involves no nonparametric estimation, which is particularly important for applications with multiple covariates, and settings with multivariate, serially correlated, or non-classical EIV.

We propose a model to flexibly estimate joint tail properties by exploiting the convergence of an appropriately scaled point cloud onto a compact limit set. Characteristics of the shape of the limit set correspond to key tail dependence properties. We directly model the shape of the limit set using B\'ezier splines, which allow flexible and parsimonious specification of shapes in two dimensions. We then fit the B\'ezier splines to data in pseudo-polar coordinates using Markov chain Monte Carlo, utilizing a limiting approximation to the conditional likelihood of the radii given angles. By imposing appropriate constraints on the parameters of the B\'ezier splines, we guarantee that each posterior sample is a valid limit set boundary, allowing direct posterior analysis of any quantity derived from the shape of the curve. Furthermore, we obtain interpretable inference on the asymptotic dependence class by using mixture priors with point masses on the corner of the unit box. Finally, we apply our model to bivariate datasets of extremes of variables related to fire risk and air pollution.