The statistical methods used to analyze medical data are becoming increasingly complex. Novel statistical methods increasingly rely on simulation studies to assess their validity. Such assessments typically appear in statistical or computational journals, and the methodology is later introduced to the medical community through tutorials. This can be problematic if applied researchers use the methodologies in settings that have not been evaluated. In this paper, we explore a case study of one such method that has become popular in the analysis of coronavirus disease 2019 (COVID-19) data. The integrated nested Laplace approximations (INLA), as implemented in the R-INLA package, approximates the marginal posterior distributions of target parameters that would have been obtained from a fully Bayesian analysis. We seek to answer an important question: Does existing research on the accuracy of INLA's approximations support how researchers are currently using it to analyze COVID-19 data? We identify three limitations to work assessing INLA's accuracy: 1) inconsistent definitions of accuracy, 2) a lack of studies validating how researchers are actually using INLA, and 3) a lack of research into the reproducibility of INLA's output. We explore the practical impact of each limitation with simulation studies based on models and data used in COVID-19 research. Our results suggest existing methods of assessing the accuracy of the INLA technique may not support how COVID-19 researchers are using it. Guided in part by our results, we offer a proposed set of minimum guidelines for researchers using statistical methodologies primarily validated through simulation studies.
相關內容
With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interactive nodes connected by edges whose weights can be either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.
Training datasets for machine learning often have some form of missingness. For example, to learn a model for deciding whom to give a loan, the available training data includes individuals who were given a loan in the past, but not those who were not. This missingness, if ignored, nullifies any fairness guarantee of the training procedure when the model is deployed. Using causal graphs, we characterize the missingness mechanisms in different real-world scenarios. We show conditions under which various distributions, used in popular fairness algorithms, can or can not be recovered from the training data. Our theoretical results imply that many of these algorithms can not guarantee fairness in practice. Modeling missingness also helps to identify correct design principles for fair algorithms. For example, in multi-stage settings where decisions are made in multiple screening rounds, we use our framework to derive the minimal distributions required to design a fair algorithm. Our proposed algorithm decentralizes the decision-making process and still achieves similar performance to the optimal algorithm that requires centralization and non-recoverable distributions.
Knowledge distillation is a strategy of training a student network with guide of the soft output from a teacher network. It has been a successful method of model compression and knowledge transfer. However, currently knowledge distillation lacks a convincing theoretical understanding. On the other hand, recent finding on neural tangent kernel enables us to approximate a wide neural network with a linear model of the network's random features. In this paper, we theoretically analyze the knowledge distillation of a wide neural network. First we provide a transfer risk bound for the linearized model of the network. Then we propose a metric of the task's training difficulty, called data inefficiency. Based on this metric, we show that for a perfect teacher, a high ratio of teacher's soft labels can be beneficial. Finally, for the case of imperfect teacher, we find that hard labels can correct teacher's wrong prediction, which explains the practice of mixing hard and soft labels.
Deep neural networks can achieve great successes when presented with large data sets and sufficient computational resources. However, their ability to learn new concepts quickly is quite limited. Meta-learning is one approach to address this issue, by enabling the network to learn how to learn. The exciting field of Deep Meta-Learning advances at great speed, but lacks a unified, insightful overview of current techniques. This work presents just that. After providing the reader with a theoretical foundation, we investigate and summarize key methods, which are categorized into i) metric-, ii) model-, and iii) optimization-based techniques. In addition, we identify the main open challenges, such as performance evaluations on heterogeneous benchmarks, and reduction of the computational costs of meta-learning.
The notion of "in-domain data" in NLP is often over-simplistic and vague, as textual data varies in many nuanced linguistic aspects such as topic, style or level of formality. In addition, domain labels are many times unavailable, making it challenging to build domain-specific systems. We show that massive pre-trained language models implicitly learn sentence representations that cluster by domains without supervision -- suggesting a simple data-driven definition of domains in textual data. We harness this property and propose domain data selection methods based on such models, which require only a small set of in-domain monolingual data. We evaluate our data selection methods for neural machine translation across five diverse domains, where they outperform an established approach as measured by both BLEU and by precision and recall of sentence selection with respect to an oracle.
Background: Recently, an extensive amount of research has been focused on compressing and accelerating Deep Neural Networks (DNNs). So far, high compression rate algorithms required the entire training dataset, or its subset, for fine-tuning and low precision calibration process. However, this requirement is unacceptable when sensitive data is involved as in medical and biometric use-cases. Contributions: We present three methods for generating synthetic samples from trained models. Then, we demonstrate how these samples can be used to fine-tune or to calibrate quantized models with negligible accuracy degradation compared to the original training set --- without using any real data in the process. Furthermore, we suggest that our best performing method, leveraging intrinsic batch normalization layers' statistics of a trained model, can be used to evaluate data similarity. Our approach opens a path towards genuine data-free model compression, alleviating the need for training data during deployment.
Deep Convolutional Neural Networks (CNNs) are a special type of Neural Networks, which have shown state-of-the-art results on various competitive benchmarks. The powerful learning ability of deep CNN is largely achieved with the use of multiple non-linear feature extraction stages that can automatically learn hierarchical representation from the data. Availability of a large amount of data and improvements in the hardware processing units have accelerated the research in CNNs and recently very interesting deep CNN architectures are reported. The recent race in deep CNN architectures for achieving high performance on the challenging benchmarks has shown that the innovative architectural ideas, as well as parameter optimization, can improve the CNN performance on various vision-related tasks. In this regard, different ideas in the CNN design have been explored such as use of different activation and loss functions, parameter optimization, regularization, and restructuring of processing units. However, the major improvement in representational capacity is achieved by the restructuring of the processing units. Especially, the idea of using a block as a structural unit instead of a layer is gaining substantial appreciation. This survey thus focuses on the intrinsic taxonomy present in the recently reported CNN architectures and consequently, classifies the recent innovations in CNN architectures into seven different categories. These seven categories are based on spatial exploitation, depth, multi-path, width, feature map exploitation, channel boosting and attention. Additionally, it covers the elementary understanding of the CNN components and sheds light on the current challenges and applications of CNNs.
Reinforcement learning (RL) algorithms have been around for decades and been employed to solve various sequential decision-making problems. These algorithms however have faced great challenges when dealing with high-dimensional environments. The recent development of deep learning has enabled RL methods to drive optimal policies for sophisticated and capable agents, which can perform efficiently in these challenging environments. This paper addresses an important aspect of deep RL related to situations that demand multiple agents to communicate and cooperate to solve complex tasks. A survey of different approaches to problems related to multi-agent deep RL (MADRL) is presented, including non-stationarity, partial observability, continuous state and action spaces, multi-agent training schemes, multi-agent transfer learning. The merits and demerits of the reviewed methods will be analyzed and discussed, with their corresponding applications explored. It is envisaged that this review provides insights about various MADRL methods and can lead to future development of more robust and highly useful multi-agent learning methods for solving real-world problems.
Deep learning has shown promising results in medical image analysis, however, the lack of very large annotated datasets confines its full potential. Although transfer learning with ImageNet pre-trained classification models can alleviate the problem, constrained image sizes and model complexities can lead to unnecessary increase in computational cost and decrease in performance. As many common morphological features are usually shared by different classification tasks of an organ, it is greatly beneficial if we can extract such features to improve classification with limited samples. Therefore, inspired by the idea of curriculum learning, we propose a strategy for building medical image classifiers using features from segmentation networks. By using a segmentation network pre-trained on similar data as the classification task, the machine can first learn the simpler shape and structural concepts before tackling the actual classification problem which usually involves more complicated concepts. Using our proposed framework on a 3D three-class brain tumor type classification problem, we achieved 82% accuracy on 191 testing samples with 91 training samples. When applying to a 2D nine-class cardiac semantic level classification problem, we achieved 86% accuracy on 263 testing samples with 108 training samples. Comparisons with ImageNet pre-trained classifiers and classifiers trained from scratch are presented.
Recent years have witnessed significant progresses in deep Reinforcement Learning (RL). Empowered with large scale neural networks, carefully designed architectures, novel training algorithms and massively parallel computing devices, researchers are able to attack many challenging RL problems. However, in machine learning, more training power comes with a potential risk of more overfitting. As deep RL techniques are being applied to critical problems such as healthcare and finance, it is important to understand the generalization behaviors of the trained agents. In this paper, we conduct a systematic study of standard RL agents and find that they could overfit in various ways. Moreover, overfitting could happen "robustly": commonly used techniques in RL that add stochasticity do not necessarily prevent or detect overfitting. In particular, the same agents and learning algorithms could have drastically different test performance, even when all of them achieve optimal rewards during training. The observations call for more principled and careful evaluation protocols in RL. We conclude with a general discussion on overfitting in RL and a study of the generalization behaviors from the perspective of inductive bias.
注冊地址： 北京市海淀區羊坊店路18號2幢3層301-191