To understand the biological characteristics of neurological disorders with functional connectivity (FC), recent studies have widely utilized deep learning-based models to identify the disease and conducted post-hoc analyses via explainable models to discover disease-related biomarkers. Most existing frameworks consist of three stages, namely, feature selection, feature extraction for classification, and analysis, where each stage is implemented separately. However, if the results at each stage lack reliability, it can cause misdiagnosis and incorrect analysis in afterward stages. In this study, we propose a novel unified framework that systemically integrates diagnoses (i.e., feature selection and feature extraction) and explanations. Notably, we devised an adaptive attention network as a feature selection approach to identify individual-specific disease-related connections. We also propose a functional network relational encoder that summarizes the global topological properties of FC by learning the inter-network relations without pre-defined edges between functional networks. Last but not least, our framework provides a novel explanatory power for neuroscientific interpretation, also termed counter-condition analysis. We simulated the FC that reverses the diagnostic information (i.e., counter-condition FC): converting a normal brain to be abnormal and vice versa. We validated the effectiveness of our framework by using two large resting-state functional magnetic resonance imaging (fMRI) datasets, Autism Brain Imaging Data Exchange (ABIDE) and REST-meta-MDD, and demonstrated that our framework outperforms other competing methods for disease identification. Furthermore, we analyzed the disease-related neurological patterns based on counter-condition analysis.
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Given the inevitability of domain shifts during inference in real-world applications, test-time adaptation (TTA) is essential for model adaptation after deployment. However, the real-world scenario of continuously changing target distributions presents challenges including catastrophic forgetting and error accumulation. Existing TTA methods for non-stationary domain shifts, while effective, incur excessive computational load, making them impractical for on-device settings. In this paper, we introduce a layer-wise auto-weighting algorithm for continual and gradual TTA that autonomously identifies layers for preservation or concentrated adaptation. By leveraging the Fisher Information Matrix (FIM), we first design the learning weight to selectively focus on layers associated with log-likelihood changes while preserving unrelated ones. Then, we further propose an exponential min-max scaler to make certain layers nearly frozen while mitigating outliers. This minimizes forgetting and error accumulation, leading to efficient adaptation to non-stationary target distribution. Experiments on CIFAR-10C, CIFAR-100C, and ImageNet-C show our method outperforms conventional continual and gradual TTA approaches while significantly reducing computational load, highlighting the importance of FIM-based learning weight in adapting to continuously or gradually shifting target domains.
Auction-based Federated Learning (AFL) has emerged as an important research field in recent years. The prevailing strategies for FL model users (MUs) assume that the entire team of the required data owners (DOs) for an FL task must be assembled before training can commence. In practice, an MU can trigger the FL training process multiple times. DOs can thus be gradually recruited over multiple FL model training sessions. Existing bidding strategies for AFL MUs are not designed to handle such scenarios. Therefore, the problem of multi-session AFL remains open. To address this problem, we propose the Multi-session Budget Optimization Strategy for forward Auction-based Federated Learning (MultiBOS-AFL). Based on hierarchical reinforcement learning, MultiBOS-AFL jointly optimizes inter-session budget pacing and intra-session bidding for AFL MUs, with the objective of maximizing the total utility. Extensive experiments on six benchmark datasets show that it significantly outperforms seven state-of-the-art approaches. On average, MultiBOS-AFL achieves 12.28% higher utility, 14.52% more data acquired through auctions for a given budget, and 1.23% higher test accuracy achieved by the resulting FL model compared to the best baseline. To the best of our knowledge, it is the first budget optimization decision support method with budget pacing capability designed for MUs in multi-session forward auction-based federated learning
Graph anomaly detection (GAD) has gained increasing attention in recent years due to its critical application in a wide range of domains, such as social networks, financial risk management, and traffic analysis. Existing GAD methods can be categorized into node and edge anomaly detection models based on the type of graph objects being detected. However, these methods typically treat node and edge anomalies as separate tasks, overlooking their associations and frequent co-occurrences in real-world graphs. As a result, they fail to leverage the complementary information provided by node and edge anomalies for mutual detection. Additionally, state-of-the-art GAD methods, such as CoLA and SL-GAD, heavily rely on negative pair sampling in contrastive learning, which incurs high computational costs, hindering their scalability to large graphs. To address these limitations, we propose a novel unified graph anomaly detection framework based on bootstrapped self-supervised learning (named BOURNE). We extract a subgraph (graph view) centered on each target node as node context and transform it into a dual hypergraph (hypergraph view) as edge context. These views are encoded using graph and hypergraph neural networks to capture the representations of nodes, edges, and their associated contexts. By swapping the context embeddings between nodes and edges and measuring the agreement in the embedding space, we enable the mutual detection of node and edge anomalies. Furthermore, BOURNE can eliminate the need for negative sampling, thereby enhancing its efficiency in handling large graphs. Extensive experiments conducted on six benchmark datasets demonstrate the superior effectiveness and efficiency of BOURNE in detecting both node and edge anomalies.
Whole slide image (WSI) assessment is a challenging and crucial step in cancer diagnosis and treatment planning. WSIs require high magnifications to facilitate sub-cellular analysis. Precise annotations for patch- or even pixel-level classifications in the context of gigapixel WSIs are tedious to acquire and require domain experts. Coarse-grained labels, on the other hand, are easily accessible, which makes WSI classification an ideal use case for multiple instance learning (MIL). In our work, we propose a novel embedding-based Dual-Query MIL pipeline (DQ-MIL). We contribute to both the embedding and aggregation steps. Since all-purpose visual feature representations are not yet available, embedding models are currently limited in terms of generalizability. With our work, we explore the potential of dynamic meta-embedding based on cutting-edge self-supervised pre-trained models in the context of MIL. Moreover, we propose a new MIL architecture capable of combining MIL-attention with correlated self-attention. The Dual-Query Perceiver design of our approach allows us to leverage the concept of self-distillation and to combine the advantages of a small model in the context of a low data regime with the rich feature representation of a larger model. We demonstrate the superior performance of our approach on three histopathological datasets, where we show improvement of up to 10% over state-of-the-art approaches.
Given a graph G and a query vertex q, the topic of community search (CS), aiming to retrieve a dense subgraph of G containing q, has gained much attention. Most existing works focus on undirected graphs which overlooks the rich information carried by the edge directions. Recently, the problem of community search over directed graphs (or CSD problem) has been studied; it finds a connected subgraph containing q, where the in-degree and out-degree of each vertex within the subgraph are at least k and l, respectively. However, existing solutions are inefficient, especially on large graphs. To tackle this issue, in this paper, we propose a novel index called D-Forest, which allows a CSD query to be completed within the optimal time cost. We further propose efficient index construction methods. Extensive experiments on six real large graphs show that our index-based query algorithm is up to two orders of magnitude faster than existing solutions.
We propose integrating the edge-computing paradigm into the multi-robot collaborative scheduling to maximize resource utilization for complex collaborative tasks, which many robots must perform together. Examples include collaborative map-merging to produce a live global map during exploration instead of traditional approaches that schedule tasks on centralized cloud-based systems to facilitate computing. Our decentralized approach to a consensus-based scheduling strategy benefits a multi-robot-edge collaboration system by adapting to dynamic computation needs and communication-changing statistics as the system tries to optimize resources while maintaining overall performance objectives. Before collaborative task offloading, continuous device, and network profiling are performed at the computing resources, and the distributed scheduling scheme then selects the resource with maximum utility derived using a utility maximization approach. Thorough evaluations with and without edge servers on simulation and real-world multi-robot systems demonstrate that a lower task latency, a large throughput gain, and better frame rate processing may be achieved compared to the conventional edge-based systems.
We consider the problem of explaining the predictions of graph neural networks (GNNs), which otherwise are considered as black boxes. Existing methods invariably focus on explaining the importance of graph nodes or edges but ignore the substructures of graphs, which are more intuitive and human-intelligible. In this work, we propose a novel method, known as SubgraphX, to explain GNNs by identifying important subgraphs. Given a trained GNN model and an input graph, our SubgraphX explains its predictions by efficiently exploring different subgraphs with Monte Carlo tree search. To make the tree search more effective, we propose to use Shapley values as a measure of subgraph importance, which can also capture the interactions among different subgraphs. To expedite computations, we propose efficient approximation schemes to compute Shapley values for graph data. Our work represents the first attempt to explain GNNs via identifying subgraphs explicitly and directly. Experimental results show that our SubgraphX achieves significantly improved explanations, while keeping computations at a reasonable level.
With the rise of knowledge graph (KG), question answering over knowledge base (KBQA) has attracted increasing attention in recent years. Despite much research has been conducted on this topic, it is still challenging to apply KBQA technology in industry because business knowledge and real-world questions can be rather complicated. In this paper, we present AliMe-KBQA, a bold attempt to apply KBQA in the E-commerce customer service field. To handle real knowledge and questions, we extend the classic "subject-predicate-object (SPO)" structure with property hierarchy, key-value structure and compound value type (CVT), and enhance traditional KBQA with constraints recognition and reasoning ability. We launch AliMe-KBQA in the Marketing Promotion scenario for merchants during the "Double 11" period in 2018 and other such promotional events afterwards. Online results suggest that AliMe-KBQA is not only able to gain better resolution and improve customer satisfaction, but also becomes the preferred knowledge management method by business knowledge staffs since it offers a more convenient and efficient management experience.
InteractE: Improving Convolution-based Knowledge Graph Embeddings by Increasing Feature Interactions
Most existing knowledge graphs suffer from incompleteness, which can be alleviated by inferring missing links based on known facts. One popular way to accomplish this is to generate low-dimensional embeddings of entities and relations, and use these to make inferences. ConvE, a recently proposed approach, applies convolutional filters on 2D reshapings of entity and relation embeddings in order to capture rich interactions between their components. However, the number of interactions that ConvE can capture is limited. In this paper, we analyze how increasing the number of these interactions affects link prediction performance, and utilize our observations to propose InteractE. InteractE is based on three key ideas -- feature permutation, a novel feature reshaping, and circular convolution. Through extensive experiments, we find that InteractE outperforms state-of-the-art convolutional link prediction baselines on FB15k-237. Further, InteractE achieves an MRR score that is 9%, 7.5%, and 23% better than ConvE on the FB15k-237, WN18RR and YAGO3-10 datasets respectively. The results validate our central hypothesis -- that increasing feature interaction is beneficial to link prediction performance. We make the source code of InteractE available to encourage reproducible research.
The recent proliferation of knowledge graphs (KGs) coupled with incomplete or partial information, in the form of missing relations (links) between entities, has fueled a lot of research on knowledge base completion (also known as relation prediction). Several recent works suggest that convolutional neural network (CNN) based models generate richer and more expressive feature embeddings and hence also perform well on relation prediction. However, we observe that these KG embeddings treat triples independently and thus fail to cover the complex and hidden information that is inherently implicit in the local neighborhood surrounding a triple. To this effect, our paper proposes a novel attention based feature embedding that captures both entity and relation features in any given entity's neighborhood. Additionally, we also encapsulate relation clusters and multihop relations in our model. Our empirical study offers insights into the efficacy of our attention based model and we show marked performance gains in comparison to state of the art methods on all datasets.
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