This article introduces a causal discovery method to learn nonlinear relationships in a directed acyclic graph with correlated Gaussian errors due to confounding. First, we derive model identifiability under the sublinear growth assumption. Then, we propose a novel method, named the Deconfounded Functional Structure Estimation (DeFuSE), consisting of a deconfounding adjustment to remove the confounding effects and a sequential procedure to estimate the causal order of variables. We implement DeFuSE via feedforward neural networks for scalable computation. Moreover, we establish the consistency of DeFuSE under an assumption called the strong causal minimality. In simulations, DeFuSE compares favorably against state-of-the-art competitors that ignore confounding or nonlinearity. Finally, we demonstrate the utility and effectiveness of the proposed approach with an application to gene regulatory network analysis. The Python implementation is available at //github.com/chunlinli/defuse.
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Causal Discovery (CD) is the process of identifying the cause-effect relationships among the variables from data. Over the years, several methods have been developed primarily based on the statistical properties of data to uncover the underlying causal mechanism. In this study we introduce the common terminologies in causal discovery, and provide a comprehensive discussion of the approaches designed to identify the causal edges in different settings. We further discuss some of the benchmark datasets available for evaluating the performance of the causal discovery algorithms, available tools to perform causal discovery readily, and the common metrics used to evaluate these methods. Finally, we conclude by presenting the common challenges involved in CD and also, discuss the applications of CD in multiple areas of interest.
The Divide and Distribute Fixed Weights algorithm (ddfw) is a dynamic local search SAT-solving algorithm that transfers weight from satisfied to falsified clauses in local minima. ddfw is remarkably effective on several hard combinatorial instances. Yet, despite its success, it has received little study since its debut in 2005. In this paper, we propose three modifications to the base algorithm: a linear weight transfer method that moves a dynamic amount of weight between clauses in local minima, an adjustment to how satisfied clauses are chosen in local minima to give weight, and a weighted-random method of selecting variables to flip. We implemented our modifications to ddfw on top of the solver yalsat. Our experiments show that our modifications boost the performance compared to the original ddfw algorithm on multiple benchmarks, including those from the past three years of SAT competitions. Moreover, our improved solver exclusively solves hard combinatorial instances that refute a conjecture on the lower bound of two Van der Waerden numbers set forth by Ahmed et al. (2014), and it performs well on a hard graph-coloring instance that has been open for over three decades.
We study a fundamental model of online preference aggregation, where an algorithm maintains an ordered list of $n$ elements. An input is a stream of preferred sets $R_1, R_2, \dots, R_t, \dots$. Upon seeing $R_t$ and without knowledge of any future sets, an algorithm has to rerank elements (change the list ordering), so that at least one element of $R_t$ is found near the list front. The incurred cost is a sum of the list update costs (the number of swaps of neighboring list elements) and access costs (position of the first element of $R_t$ on the list). This scenario occurs naturally in applications such as ordering items in an online shop using aggregated preferences of shop customers. The theoretical underpinning of this problem is known as Min-Sum Set Cover. Unlike previous work (Fotakis et al., ICALP 2020, NIPS 2020) that mostly studied the performance of an online algorithm ALG against the static optimal solution (a single optimal list ordering), in this paper, we study an arguably harder variant where the benchmark is the provably stronger optimal dynamic solution OPT (that may also modify the list ordering). In terms of an online shop, this means that the aggregated preferences of its user base evolve with time. We construct a computationally efficient randomized algorithm whose competitive ratio (ALG-to-OPT cost ratio) is $O(r^2)$ and prove the existence of a deterministic $O(r^4)$-competitive algorithm. Here, $r$ is the maximum cardinality of sets $R_t$. This is the first algorithm whose ratio does not depend on $n$: the previously best algorithm for this problem was $O(r^{3/2} \cdot \sqrt{n})$-competitive and $\Omega(r)$ is a lower bound on the performance of any deterministic online algorithm.
Causal phenomena associated with rare events occur across a wide range of engineering problems, such as risk-sensitive safety analysis, accident analysis and prevention, and extreme value theory. However, current methods for causal discovery are often unable to uncover causal links, between random variables in a dynamic setting, that manifest only when the variables first experience low-probability realizations. To address this issue, we introduce a novel statistical independence test on data collected from time-invariant dynamical systems in which rare but consequential events occur. In particular, we exploit the time-invariance of the underlying data to construct a superimposed dataset of the system state before rare events happen at different timesteps. We then design a conditional independence test on the reorganized data. We provide non-asymptotic sample complexity bounds for the consistency of our method, and validate its performance across various simulated and real-world datasets, including incident data collected from the Caltrans Performance Measurement System (PeMS). Code containing the datasets and experiments is publicly available.
Causal discovery and causal reasoning are classically treated as separate and consecutive tasks: one first infers the causal graph, and then uses it to estimate causal effects of interventions. However, such a two-stage approach is uneconomical, especially in terms of actively collected interventional data, since the causal query of interest may not require a fully-specified causal model. From a Bayesian perspective, it is also unnatural, since a causal query (e.g., the causal graph or some causal effect) can be viewed as a latent quantity subject to posterior inference -- other unobserved quantities that are not of direct interest (e.g., the full causal model) ought to be marginalized out in this process and contribute to our epistemic uncertainty. In this work, we propose Active Bayesian Causal Inference (ABCI), a fully-Bayesian active learning framework for integrated causal discovery and reasoning, which jointly infers a posterior over causal models and queries of interest. In our approach to ABCI, we focus on the class of causally-sufficient, nonlinear additive noise models, which we model using Gaussian processes. We sequentially design experiments that are maximally informative about our target causal query, collect the corresponding interventional data, and update our beliefs to choose the next experiment. Through simulations, we demonstrate that our approach is more data-efficient than several baselines that only focus on learning the full causal graph. This allows us to accurately learn downstream causal queries from fewer samples while providing well-calibrated uncertainty estimates for the quantities of interest.
Understanding causality helps to structure interventions to achieve specific goals and enables predictions under interventions. With the growing importance of learning causal relationships, causal discovery tasks have transitioned from using traditional methods to infer potential causal structures from observational data to the field of pattern recognition involved in deep learning. The rapid accumulation of massive data promotes the emergence of causal search methods with brilliant scalability. Existing summaries of causal discovery methods mainly focus on traditional methods based on constraints, scores and FCMs, there is a lack of perfect sorting and elaboration for deep learning-based methods, also lacking some considers and exploration of causal discovery methods from the perspective of variable paradigms. Therefore, we divide the possible causal discovery tasks into three types according to the variable paradigm and give the definitions of the three tasks respectively, define and instantiate the relevant datasets for each task and the final causal model constructed at the same time, then reviews the main existing causal discovery methods for different tasks. Finally, we propose some roadmaps from different perspectives for the current research gaps in the field of causal discovery and point out future research directions.
We consider the problem of discovering $K$ related Gaussian directed acyclic graphs (DAGs), where the involved graph structures share a consistent causal order and sparse unions of supports. Under the multi-task learning setting, we propose a $l_1/l_2$-regularized maximum likelihood estimator (MLE) for learning $K$ linear structural equation models. We theoretically show that the joint estimator, by leveraging data across related tasks, can achieve a better sample complexity for recovering the causal order (or topological order) than separate estimations. Moreover, the joint estimator is able to recover non-identifiable DAGs, by estimating them together with some identifiable DAGs. Lastly, our analysis also shows the consistency of union support recovery of the structures. To allow practical implementation, we design a continuous optimization problem whose optimizer is the same as the joint estimator and can be approximated efficiently by an iterative algorithm. We validate the theoretical analysis and the effectiveness of the joint estimator in experiments.
This paper focuses on the expected difference in borrower's repayment when there is a change in the lender's credit decisions. Classical estimators overlook the confounding effects and hence the estimation error can be magnificent. As such, we propose another approach to construct the estimators such that the error can be greatly reduced. The proposed estimators are shown to be unbiased, consistent, and robust through a combination of theoretical analysis and numerical testing. Moreover, we compare the power of estimating the causal quantities between the classical estimators and the proposed estimators. The comparison is tested across a wide range of models, including linear regression models, tree-based models, and neural network-based models, under different simulated datasets that exhibit different levels of causality, different degrees of nonlinearity, and different distributional properties. Most importantly, we apply our approaches to a large observational dataset provided by a global technology firm that operates in both the e-commerce and the lending business. We find that the relative reduction of estimation error is strikingly substantial if the causal effects are accounted for correctly.
Causal inference is a critical research topic across many domains, such as statistics, computer science, education, public policy and economics, for decades. Nowadays, estimating causal effect from observational data has become an appealing research direction owing to the large amount of available data and low budget requirement, compared with randomized controlled trials. Embraced with the rapidly developed machine learning area, various causal effect estimation methods for observational data have sprung up. In this survey, we provide a comprehensive review of causal inference methods under the potential outcome framework, one of the well known causal inference framework. The methods are divided into two categories depending on whether they require all three assumptions of the potential outcome framework or not. For each category, both the traditional statistical methods and the recent machine learning enhanced methods are discussed and compared. The plausible applications of these methods are also presented, including the applications in advertising, recommendation, medicine and so on. Moreover, the commonly used benchmark datasets as well as the open-source codes are also summarized, which facilitate researchers and practitioners to explore, evaluate and apply the causal inference methods.
Graph Neural Networks (GNNs), which generalize deep neural networks to graph-structured data, have drawn considerable attention and achieved state-of-the-art performance in numerous graph related tasks. However, existing GNN models mainly focus on designing graph convolution operations. The graph pooling (or downsampling) operations, that play an important role in learning hierarchical representations, are usually overlooked. In this paper, we propose a novel graph pooling operator, called Hierarchical Graph Pooling with Structure Learning (HGP-SL), which can be integrated into various graph neural network architectures. HGP-SL incorporates graph pooling and structure learning into a unified module to generate hierarchical representations of graphs. More specifically, the graph pooling operation adaptively selects a subset of nodes to form an induced subgraph for the subsequent layers. To preserve the integrity of graph's topological information, we further introduce a structure learning mechanism to learn a refined graph structure for the pooled graph at each layer. By combining HGP-SL operator with graph neural networks, we perform graph level representation learning with focus on graph classification task. Experimental results on six widely used benchmarks demonstrate the effectiveness of our proposed model.
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