Modeling and drawing inference on the joint associations between single nucleotide polymorphisms and a disease has sparked interest in genome-wide associations studies. In the motivating Boston Lung Cancer Survival Cohort (BLCSC) data, the presence of a large number of single nucleotide polymorphisms of interest, though smaller than the sample size, challenges inference on their joint associations with the disease outcome. In similar settings, we find that neither the de-biased lasso approach (van de Geer et al. 2014), which assumes sparsity on the inverse information matrix, nor the standard maximum likelihood method can yield confidence intervals with satisfactory coverage probabilities for generalized linear models. Under this "large $n$, diverging $p$" scenario, we propose an alternative de-biased lasso approach by directly inverting the Hessian matrix without imposing the matrix sparsity assumption, which further reduces bias compared to the original de-biased lasso and ensures valid confidence intervals with nominal coverage probabilities. We establish the asymptotic distributions of any linear combinations of the parameter estimates, which lays the theoretical ground for drawing inference. Simulations show that the proposed refined de-biased estimating method performs well in removing bias and yields honest confidence interval coverage. We use the proposed method to analyze the aforementioned BLCSC data, a large scale hospital-based epidemiology cohort study, that investigates the joint effects of genetic variants on lung cancer risks.
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We consider the problem of finding tuned regularized parameter estimators for linear models. We start by showing that three known optimal linear estimators belong to a wider class of estimators that can be formulated as a solution to a weighted and constrained minimization problem. The optimal weights, however, are typically unknown in many applications. This begs the question, how should we choose the weights using only the data? We propose using the covariance fitting SPICE-methodology to obtain data-adaptive weights and show that the resulting class of estimators yields tuned versions of known regularized estimators - such as ridge regression, LASSO, and regularized least absolute deviation. These theoretical results unify several important estimators under a common umbrella. The resulting tuned estimators are also shown to be practically relevant by means of a number of numerical examples.
We study meta-learning in Markov Decision Processes (MDP) with linear transition models in the undiscounted episodic setting. Under a task sharedness metric based on model proximity we study task families characterized by a distribution over models specified by a bias term and a variance component. We then propose BUC-MatrixRL, a version of the UC-Matrix RL algorithm, and show it can meaningfully leverage a set of sampled training tasks to quickly solve a test task sampled from the same task distribution by learning an estimator of the bias parameter of the task distribution. The analysis leverages and extends results in the learning to learn linear regression and linear bandit setting to the more general case of MDP's with linear transition models. We prove that compared to learning the tasks in isolation, BUC-Matrix RL provides significant improvements in the transfer regret for high bias low variance task distributions.
Continuous determinantal point processes (DPPs) are a class of repulsive point processes on $\mathbb{R}^d$ with many statistical applications. Although an explicit expression of their density is known, it is too complicated to be used directly for maximum likelihood estimation. In the stationary case, an approximation using Fourier series has been suggested, but it is limited to rectangular observation windows and no theoretical results support it. In this contribution, we investigate a different way to approximate the likelihood by looking at its asymptotic behaviour when the observation window grows towards $\mathbb{R}^d$. This new approximation is not limited to rectangular windows, is faster to compute than the previous one, does not require any tuning parameter, and some theoretical justifications are provided. It moreover provides an explicit formula for estimating the asymptotic variance of the associated estimator. The performances are assessed in a simulation study on standard parametric models on $\mathbb{R}^d$ and compare favourably to common alternative estimation methods for continuous DPPs.
Given a random sample of size $n$ from a $p$ dimensional random vector, where both $n$ and $p$ are large, we are interested in testing whether the $p$ components of the random vector are mutually independent. This is the so-called complete independence test. In the multivariate normal case, it is equivalent to testing whether the correlation matrix is an identity matrix. In this paper, we propose a one-sided empirical likelihood method for the complete independence test for multivariate normal data based on squared sample correlation coefficients. The limiting distribution for our one-sided empirical likelihood test statistic is proved to be $Z^2I(Z>0)$ when both $n$ and $p$ tend to infinity, where $Z$ is a standard normal random variable. In order to improve the power of the empirical likelihood test statistic, we also introduce a rescaled empirical likelihood test statistic. We carry out an extensive simulation study to compare the performance of the rescaled empirical likelihood method and two other statistics which are related to the sum of squared sample correlation coefficients.
We extend the generalised functional additive mixed model to include (functional) compositional covariates carrying relative information of a whole. Relying on the isometric isomorphism of the Bayes Hilbert space of probability densities with a subspace of the $L^2$, we include functional compositions as transformed functional covariates with constrained effect function. The extended model allows for the estimation of linear, nonlinear and time-varying effects of scalar and functional covariates, as well as (correlated) functional random effects, in addition to the compositional effects. We use the model to estimate the effect of the age, sex and smoking (functional) composition of the population on regional Covid-19 incidence data for Spain, while accounting for climatological and socio-demographic covariate effects and spatial correlation.
This paper studies the inference of the regression coefficient matrix under multivariate response linear regressions in the presence of hidden variables. A novel procedure for constructing confidence intervals of entries of the coefficient matrix is proposed. Our method first utilizes the multivariate nature of the responses by estimating and adjusting the hidden effect to construct an initial estimator of the coefficient matrix. By further deploying a low-dimensional projection procedure to reduce the bias introduced by the regularization in the previous step, a refined estimator is proposed and shown to be asymptotically normal. The asymptotic variance of the resulting estimator is derived with closed-form expression and can be consistently estimated. In addition, we propose a testing procedure for the existence of hidden effects and provide its theoretical justification. Both our procedures and their analyses are valid even when the feature dimension and the number of responses exceed the sample size. Our results are further backed up via extensive simulations and a real data analysis.
Missing values in covariates due to censoring by signal interference or lack of sensitivity in the measuring devices are common in industrial problems. We propose a full Bayesian solution to the prediction problem with an efficient Markov Chain Monte Carlo (MCMC) algorithm that updates all the censored covariate values jointly in a random scan Gibbs sampler. We show that the joint updating of missing covariate values can be at least two orders of magnitude more efficient than univariate updating. This increased efficiency is shown to be crucial for quickly learning the missing covariate values and their uncertainty in a real-time decision making context, in particular when there is substantial correlation in the posterior for the missing values. The approach is evaluated on simulated data and on data from the telecom sector. Our results show that the proposed Bayesian imputation gives substantially more accurate predictions than na\"ive imputation, and that the use of auxiliary variables in the imputation gives additional predictive power.
We establish that the limiting spectral distribution of a block-rescaled empirical covariance matrix is an arcsine law when the ratio between the dimension and the underlying sample size converges to 1 and when the samples corresponding to each block are independent. We further propose a conjecture for the cases where the latter ratio converges to a constant in the unit interval.
We consider the dynamic pricing problem with covariates under a generalized linear demand model: a seller can dynamically adjust the price of a product over a horizon of $T$ time periods, and at each time period $t$, the demand of the product is jointly determined by the price and an observable covariate vector $x_t\in\mathbb{R}^d$ through an unknown generalized linear model. Most of the existing literature assumes the covariate vectors $x_t$'s are independently and identically distributed (i.i.d.); the few papers that relax this assumption either sacrifice model generality or yield sub-optimal regret bounds. In this paper we show that a simple pricing algorithm has an $O(d\sqrt{T}\log T)$ regret upper bound without assuming any statistical structure on the covariates $x_t$ (which can even be arbitrarily chosen). The upper bound on the regret matches the lower bound (even under the i.i.d. assumption) up to logarithmic factors. Our paper thus shows that (i) the i.i.d. assumption is not necessary for obtaining low regret, and (ii) the regret bound can be independent of the (inverse) minimum eigenvalue of the covariance matrix of the $x_t$'s, a quantity present in previous bounds. Furthermore, we discuss a condition under which a better regret is achievable and how a Thompson sampling algorithm can be applied to give an efficient computation of the prices.
We propose a new method of estimation in topic models, that is not a variation on the existing simplex finding algorithms, and that estimates the number of topics K from the observed data. We derive new finite sample minimax lower bounds for the estimation of A, as well as new upper bounds for our proposed estimator. We describe the scenarios where our estimator is minimax adaptive. Our finite sample analysis is valid for any number of documents (n), individual document length (N_i), dictionary size (p) and number of topics (K), and both p and K are allowed to increase with n, a situation not handled well by previous analyses. We complement our theoretical results with a detailed simulation study. We illustrate that the new algorithm is faster and more accurate than the current ones, although we start out with a computational and theoretical disadvantage of not knowing the correct number of topics K, while we provide the competing methods with the correct value in our simulations.
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