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The increasing prevalence of multiplex networks has spurred a critical need to take into account potential dependencies across different layers, especially when the goal is community detection, which is a fundamental learning task in network analysis. We propose a full Bayesian mixture model for community detection in both single-layer and multi-layer networks. A key feature of our model is the joint modeling of the nodal attributes that often come with the network data as a spatial process over the latent space. In addition, our model for multi-layer networks allows layers to have different strengths of dependency in the unique latent position structure and assumes that the probability of a relation between two actors (in a layer) depends on the distances between their latent positions (multiplied by a layer-specific factor) and the difference between their nodal attributes. Under our prior specifications, the actors' positions in the latent space arise from a finite mixture of Gaussian distributions, each corresponding to a cluster. Simulated examples show that our model performs favorably compared to the existing ones. The model is also applied to a real three-layer network of employees in a law firm.

Transformer, which originates from machine translation, is particularly powerful at modeling long-range dependencies. Currently, the transformer is making revolutionary progress in various vision tasks, leading to significant performance improvements compared with the convolutional neural network (CNN) based frameworks. In this paper, we conduct extensive research on exploiting the contributions of transformers for accurate and reliable salient object detection. For the former, we apply transformer to a deterministic model, and explain that the effective structure modeling and global context modeling abilities lead to its superior performance compared with the CNN based frameworks. For the latter, we observe that both CNN and transformer based frameworks suffer greatly from the over-confidence issue, where the models tend to generate wrong predictions with high confidence. To estimate the reliability degree of both CNN- and transformer-based frameworks, we further present a latent variable model, namely inferential generative adversarial network (iGAN), based on the generative adversarial network (GAN). The stochastic attribute of the latent variable makes it convenient to estimate the predictive uncertainty, serving as an auxiliary output to evaluate the reliability of model prediction. Different from the conventional GAN, which defines the distribution of the latent variable as fixed standard normal distribution $\mathcal{N}(0,\mathbf{I})$, the proposed iGAN infers the latent variable by gradient-based Markov Chain Monte Carlo (MCMC), namely Langevin dynamics, leading to an input-dependent latent variable model. We apply our proposed iGAN to both fully and weakly supervised salient object detection, and explain that iGAN within the transformer framework leads to both accurate and reliable salient object detection.

Network Intrusion and Detection Systems (NIDS) are essential for malicious traffic and cyberattack detection in modern networks. Artificial intelligence-based NIDS are powerful tools that can learn complex data correlations for accurate attack prediction. Graph Neural Networks (GNNs) provide an opportunity to analyze network topology along with flow features which makes them particularly suitable for NIDS applications. However, successful application of such tool requires large amounts of carefully collected and labeled data for training and testing. In this paper we inspect different versions of ToN-IoT dataset and point out inconsistencies in some versions. We filter the full version of ToN-IoT and present a new version labeled ToN-IoT-R. To ensure generalization we propose a new standardized and compact set of flow features which are derived solely from NetFlowv5-compatible data. We separate numeric data and flags into different categories and propose a new dataset-agnostic normalization approach for numeric features. This allows us to preserve meaning of flow flags and we propose to conduct targeted analysis based on, for instance, network protocols. For flow classification we use E-GraphSage algorithm with modified node initialization technique that allows us to add node degree to node features. We achieve high classification accuracy on ToN-IoT-R and compare it with previously published results for ToN-IoT, NF-ToN-IoT, and NF-ToN-IoT-v2. We highlight the importance of careful data collection and labeling and appropriate data preprocessing choice and conclude that the proposed set of features is more applicable for real NIDS due to being less demanding to traffic monitoring equipment while preserving high flow classification accuracy.

We develop and study new adversarial perturbations that enable an attacker to gain control over decisions in generic Artificial Intelligence (AI) systems including deep learning neural networks. In contrast to adversarial data modification, the attack mechanism we consider here involves alterations to the AI system itself. Such a stealth attack could be conducted by a mischievous, corrupt or disgruntled member of a software development team. It could also be made by those wishing to exploit a ``democratization of AI'' agenda, where network architectures and trained parameter sets are shared publicly. We develop a range of new implementable attack strategies with accompanying analysis, showing that with high probability a stealth attack can be made transparent, in the sense that system performance is unchanged on a fixed validation set which is unknown to the attacker, while evoking any desired output on a trigger input of interest. The attacker only needs to have estimates of the size of the validation set and the spread of the AI's relevant latent space. In the case of deep learning neural networks, we show that a one neuron attack is possible - a modification to the weights and bias associated with a single neuron - revealing a vulnerability arising from over-parameterization. We illustrate these concepts using state of the art architectures on two standard image data sets. Guided by the theory and computational results, we also propose strategies to guard against stealth attacks.

Out-of-distribution (OOD) detection is critical to ensuring the reliability and safety of machine learning systems. For instance, in autonomous driving, we would like the driving system to issue an alert and hand over the control to humans when it detects unusual scenes or objects that it has never seen before and cannot make a safe decision. This problem first emerged in 2017 and since then has received increasing attention from the research community, leading to a plethora of methods developed, ranging from classification-based to density-based to distance-based ones. Meanwhile, several other problems are closely related to OOD detection in terms of motivation and methodology. These include anomaly detection (AD), novelty detection (ND), open set recognition (OSR), and outlier detection (OD). Despite having different definitions and problem settings, these problems often confuse readers and practitioners, and as a result, some existing studies misuse terms. In this survey, we first present a generic framework called generalized OOD detection, which encompasses the five aforementioned problems, i.e., AD, ND, OSR, OOD detection, and OD. Under our framework, these five problems can be seen as special cases or sub-tasks, and are easier to distinguish. Then, we conduct a thorough review of each of the five areas by summarizing their recent technical developments. We conclude this survey with open challenges and potential research directions.

A community reveals the features and connections of its members that are different from those in other communities in a network. Detecting communities is of great significance in network analysis. Despite the classical spectral clustering and statistical inference methods, we notice a significant development of deep learning techniques for community detection in recent years with their advantages in handling high dimensional network data. Hence, a comprehensive overview of community detection's latest progress through deep learning is timely to both academics and practitioners. This survey devises and proposes a new taxonomy covering different categories of the state-of-the-art methods, including deep learning-based models upon deep neural networks, deep nonnegative matrix factorization and deep sparse filtering. The main category, i.e., deep neural networks, is further divided into convolutional networks, graph attention networks, generative adversarial networks and autoencoders. The survey also summarizes the popular benchmark data sets, model evaluation metrics, and open-source implementations to address experimentation settings. We then discuss the practical applications of community detection in various domains and point to implementation scenarios. Finally, we outline future directions by suggesting challenging topics in this fast-growing deep learning field.

This paper focuses on two fundamental tasks of graph analysis: community detection and node representation learning, which capture the global and local structures of graphs, respectively. In the current literature, these two tasks are usually independently studied while they are actually highly correlated. We propose a probabilistic generative model called vGraph to learn community membership and node representation collaboratively. Specifically, we assume that each node can be represented as a mixture of communities, and each community is defined as a multinomial distribution over nodes. Both the mixing coefficients and the community distribution are parameterized by the low-dimensional representations of the nodes and communities. We designed an effective variational inference algorithm which regularizes the community membership of neighboring nodes to be similar in the latent space. Experimental results on multiple real-world graphs show that vGraph is very effective in both community detection and node representation learning, outperforming many competitive baselines in both tasks. We show that the framework of vGraph is quite flexible and can be easily extended to detect hierarchical communities.

Lots of learning tasks require dealing with graph data which contains rich relation information among elements. Modeling physics system, learning molecular fingerprints, predicting protein interface, and classifying diseases require that a model to learn from graph inputs. In other domains such as learning from non-structural data like texts and images, reasoning on extracted structures, like the dependency tree of sentences and the scene graph of images, is an important research topic which also needs graph reasoning models. Graph neural networks (GNNs) are connectionist models that capture the dependence of graphs via message passing between the nodes of graphs. Unlike standard neural networks, graph neural networks retain a state that can represent information from its neighborhood with an arbitrary depth. Although the primitive graph neural networks have been found difficult to train for a fixed point, recent advances in network architectures, optimization techniques, and parallel computation have enabled successful learning with them. In recent years, systems based on graph convolutional network (GCN) and gated graph neural network (GGNN) have demonstrated ground-breaking performance on many tasks mentioned above. In this survey, we provide a detailed review over existing graph neural network models, systematically categorize the applications, and propose four open problems for future research.

Graph Neural Networks (GNNs) for representation learning of graphs broadly follow a neighborhood aggregation framework, where the representation vector of a node is computed by recursively aggregating and transforming feature vectors of its neighboring nodes. Many GNN variants have been proposed and have achieved state-of-the-art results on both node and graph classification tasks. However, despite GNNs revolutionizing graph representation learning, there is limited understanding of their representational properties and limitations. Here, we present a theoretical framework for analyzing the expressive power of GNNs in capturing different graph structures. Our results characterize the discriminative power of popular GNN variants, such as Graph Convolutional Networks and GraphSAGE, and show that they cannot learn to distinguish certain simple graph structures. We then develop a simple architecture that is provably the most expressive among the class of GNNs and is as powerful as the Weisfeiler-Lehman graph isomorphism test. We empirically validate our theoretical findings on a number of graph classification benchmarks, and demonstrate that our model achieves state-of-the-art performance.

Traditional methods for link prediction can be categorized into three main types: graph structure feature-based, latent feature-based, and explicit feature-based. Graph structure feature methods leverage some handcrafted node proximity scores, e.g., common neighbors, to estimate the likelihood of links. Latent feature methods rely on factorizing networks' matrix representations to learn an embedding for each node. Explicit feature methods train a machine learning model on two nodes' explicit attributes. Each of the three types of methods has its unique merits. In this paper, we propose SEAL (learning from Subgraphs, Embeddings, and Attributes for Link prediction), a new framework for link prediction which combines the power of all the three types into a single graph neural network (GNN). GNN is a new type of neural network which directly accepts graphs as input and outputs their labels. In SEAL, the input to the GNN is a local subgraph around each target link. We prove theoretically that our local subgraphs also reserve a great deal of high-order graph structure features related to link existence. Another key feature is that our GNN can naturally incorporate latent features and explicit features. It is achieved by concatenating node embeddings (latent features) and node attributes (explicit features) in the node information matrix for each subgraph, thus combining the three types of features to enhance GNN learning. Through extensive experiments, SEAL shows unprecedentedly strong performance against a wide range of baseline methods, including various link prediction heuristics and network embedding methods.