Chest X-ray images are commonly used for predicting acute and chronic cardiopulmonary conditions, but efforts to integrate them with structured clinical data face challenges due to incomplete electronic health records (EHR). This paper introduces \textbf{MedPromptX}, the first model to integrate multimodal large language models (MLLMs), few-shot prompting (FP) and visual grounding (VG) to combine imagery with EHR data for chest X-ray diagnosis. A pre-trained MLLM is utilized to complement the missing EHR information, providing a comprehensive understanding of patients' medical history. Additionally, FP reduces the necessity for extensive training of MLLMs while effectively tackling the issue of hallucination. Nevertheless, the process of determining the optimal number of few-shot examples and selecting high-quality candidates can be burdensome, yet it profoundly influences model performance. Hence, we propose a new technique that dynamically refines few-shot data for real-time adjustment to new patient scenarios. Moreover, VG aids in focusing the model's attention on relevant regions of interest in X-ray images, enhancing the identification of abnormalities. We release MedPromptX-VQA, a new in-context visual question answering dataset encompassing interleaved image and EHR data derived from MIMIC-IV and MIMIC-CXR databases. Results demonstrate the SOTA performance of MedPromptX, achieving an 11% improvement in F1-score compared to the baselines. Code and data are available at //github.com/BioMedIA-MBZUAI/MedPromptX
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The diagnosis and treatment of chest diseases play a crucial role in maintaining human health. X-ray examination has become the most common clinical examination means due to its efficiency and cost-effectiveness. Artificial intelligence analysis methods for chest X-ray images are limited by insufficient annotation data and varying levels of annotation, resulting in weak generalization ability and difficulty in clinical dissemination. Here we present EVA-X, an innovative foundational model based on X-ray images with broad applicability to various chest disease detection tasks. EVA-X is the first X-ray image based self-supervised learning method capable of capturing both semantic and geometric information from unlabeled images for universal X-ray image representation. Through extensive experimentation, EVA-X has demonstrated exceptional performance in chest disease analysis and localization, becoming the first model capable of spanning over 20 different chest diseases and achieving leading results in over 11 different detection tasks in the medical field. Additionally, EVA-X significantly reduces the burden of data annotation in the medical AI field, showcasing strong potential in the domain of few-shot learning. The emergence of EVA-X will greatly propel the development and application of foundational medical models, bringing about revolutionary changes in future medical research and clinical practice. Our codes and models are available at: //github.com/hustvl/EVA-X.
Automatic medical image segmentation technology has the potential to expedite pathological diagnoses, thereby enhancing the efficiency of patient care. However, medical images often have complex textures and structures, and the models often face the problem of reduced image resolution and information loss due to downsampling. To address this issue, we propose HC-Mamba, a new medical image segmentation model based on the modern state space model Mamba. Specifically, we introduce the technique of dilated convolution in the HC-Mamba model to capture a more extensive range of contextual information without increasing the computational cost by extending the perceptual field of the convolution kernel. In addition, the HC-Mamba model employs depthwise separable convolutions, significantly reducing the number of parameters and the computational power of the model. By combining dilated convolution and depthwise separable convolutions, HC-Mamba is able to process large-scale medical image data at a much lower computational cost while maintaining a high level of performance. We conduct comprehensive experiments on segmentation tasks including skin lesion, and conduct extensive experiments on ISIC17 and ISIC18 to demonstrate the potential of the HC-Mamba model in medical image segmentation. The experimental results show that HC-Mamba exhibits competitive performance on all these datasets, thereby proving its effectiveness and usefulness in medical image segmentation.
Lung segmentation in chest X-ray images is of paramount importance as it plays a crucial role in the diagnosis and treatment of various lung diseases. This paper presents a novel approach for lung segmentation in chest X-ray images by integrating U-net with attention mechanisms. The proposed method enhances the U-net architecture by incorporating a Convolutional Block Attention Module (CBAM), which unifies three distinct attention mechanisms: channel attention, spatial attention, and pixel attention. The channel attention mechanism enables the model to concentrate on the most informative features across various channels. The spatial attention mechanism enhances the model's precision in localization by focusing on significant spatial locations. Lastly, the pixel attention mechanism empowers the model to focus on individual pixels, further refining the model's focus and thereby improving the accuracy of segmentation. The adoption of the proposed CBAM in conjunction with the U-net architecture marks a significant advancement in the field of medical imaging, with potential implications for improving diagnostic precision and patient outcomes. The efficacy of this method is validated against contemporary state-of-the-art techniques, showcasing its superiority in segmentation performance.
In recent years, large language models have attracted significant attention due to their exceptional performance across a multitude of natural language process tasks, and have been widely applied in various fields. However, the application of large language models in the Intellectual Property (IP) space is challenging due to the strong need for specialized knowledge, privacy protection, processing of extremely long text in this field. In this technical report, we present for the first time a low-cost, standardized procedure for training IP-oriented LLMs, meeting the unique requirements of the IP domain. Using this standard process, we have trained the PatentGPT series models based on open-source pretrained models. By evaluating them on the open-source IP-oriented benchmark MOZIP, our domain-specific LLMs outperforms GPT-4, indicating the effectiveness of the proposed training procedure and the expertise of the PatentGPT models in the IP demain. What is impressive is that our model significantly outperformed GPT-4 on the 2019 China Patent Agent Qualification Examination by achieving a score of 65, reaching the level of human experts. Additionally, the PatentGPT model, which utilizes the SMoE architecture, achieves performance comparable to that of GPT-4 in the IP domain and demonstrates a better cost-performance ratio on long-text tasks, potentially serving as an alternative to GPT-4 within the IP domain.
Given a query consisting of a reference image and a relative caption, Composed Image Retrieval (CIR) aims to retrieve target images visually similar to the reference one while incorporating the changes specified in the relative caption. The reliance of supervised methods on labor-intensive manually labeled datasets hinders their broad applicability. In this work, we introduce a new task, Zero-Shot CIR (ZS-CIR), that addresses CIR without the need for a labeled training dataset. We propose an approach named iSEARLE (improved zero-Shot composEd imAge Retrieval with textuaL invErsion) that involves mapping the visual information of the reference image into a pseudo-word token in CLIP token embedding space and combining it with the relative caption. To foster research on ZS-CIR, we present an open-domain benchmarking dataset named CIRCO (Composed Image Retrieval on Common Objects in context), the first CIR dataset where each query is labeled with multiple ground truths and a semantic categorization. The experimental results illustrate that iSEARLE obtains state-of-the-art performance on three different CIR datasets -- FashionIQ, CIRR, and the proposed CIRCO -- and two additional evaluation settings, namely domain conversion and object composition. The dataset, the code, and the model are publicly available at //github.com/miccunifi/SEARLE.
Denoising hyperspectral images (HSIs) is a crucial preprocessing procedure due to the noise originating from intra-imaging mechanisms and environmental factors. Utilizing domain-specific knowledge of HSIs, such as spectral correlation, spatial self-similarity, and spatial-spectral correlation, is essential for deep learning-based denoising. Existing methods are often constrained by running time, space complexity, and computational complexity, employing strategies that explore these priors separately. While the strategies can avoid some redundant information, considering that hyperspectral images are 3-D images with strong spatial continuity and spectral correlation, this kind of strategy inevitably overlooks subtle long-range spatial-spectral information that positively impacts image restoration. This paper proposes a Spatial-Spectral Selective State Space Model-based U-shaped network, termed Spatial-Spectral U-Mamba (SSUMamba), for hyperspectral image denoising. We can obtain complete global spatial-spectral correlation within a module thanks to the linear space complexity in State Space Model (SSM) computations. We introduce an Alternating Scan (SSAS) strategy for HSI data, which helps model the information flow in multiple directions in 3-D HSIs. Experimental results demonstrate that our method outperforms several compared methods. The source code will be available at //github.com/lronkitty/SSUMamba.
Deterministic and nondeterministic finite automata (DFAs and NFAs) are abstract models of computation commonly taught in introductory computing theory courses. These models have important applications (such as fast regular expression matching), and are used to introduce formal language theory. Undergraduate students often struggle with understanding these models at first, due to the level of abstraction. As a result, various pedagogical tools have been developed to allow students to practice with these models. We introduce the FSM Builder, a new pedagogical tool enabling students to practice constructing DFAs and NFAs with a graphical editor, giving personalized feedback and partial credit. The algorithms used for generating these are heavily inspired by previous works. The key advantages to its competitors are greater flexibility and scalability. This is because the FSM Builder is implemented using efficient algorithms from an open source package, allowing for easy extension and question creation. We discuss the implementation of the tool, how it stands out from previous tools, and takeaways from experiences of using the tool in multiple large courses. Survey results indicate the interface and feedback provided by the tool were useful to students.
Knowledge enhanced pre-trained language models (K-PLMs) are shown to be effective for many public tasks in the literature but few of them have been successfully applied in practice. To address this problem, we propose K-AID, a systematic approach that includes a low-cost knowledge acquisition process for acquiring domain knowledge, an effective knowledge infusion module for improving model performance, and a knowledge distillation component for reducing the model size and deploying K-PLMs on resource-restricted devices (e.g., CPU) for real-world application. Importantly, instead of capturing entity knowledge like the majority of existing K-PLMs, our approach captures relational knowledge, which contributes to better-improving sentence-level text classification and text matching tasks that play a key role in question answering (QA). We conducted a set of experiments on five text classification tasks and three text matching tasks from three domains, namely E-commerce, Government, and Film&TV, and performed online A/B tests in E-commerce. Experimental results show that our approach is able to achieve substantial improvement on sentence-level question answering tasks and bring beneficial business value in industrial settings.
Generative Adversarial Networks (GANs) can produce images of surprising complexity and realism, but are generally modeled to sample from a single latent source ignoring the explicit spatial interaction between multiple entities that could be present in a scene. Capturing such complex interactions between different objects in the world, including their relative scaling, spatial layout, occlusion, or viewpoint transformation is a challenging problem. In this work, we propose to model object composition in a GAN framework as a self-consistent composition-decomposition network. Our model is conditioned on the object images from their marginal distributions to generate a realistic image from their joint distribution by explicitly learning the possible interactions. We evaluate our model through qualitative experiments and user evaluations in both the scenarios when either paired or unpaired examples for the individual object images and the joint scenes are given during training. Our results reveal that the learned model captures potential interactions between the two object domains given as input to output new instances of composed scene at test time in a reasonable fashion.
Distant supervision can effectively label data for relation extraction, but suffers from the noise labeling problem. Recent works mainly perform soft bag-level noise reduction strategies to find the relatively better samples in a sentence bag, which is suboptimal compared with making a hard decision of false positive samples in sentence level. In this paper, we introduce an adversarial learning framework, which we named DSGAN, to learn a sentence-level true-positive generator. Inspired by Generative Adversarial Networks, we regard the positive samples generated by the generator as the negative samples to train the discriminator. The optimal generator is obtained until the discrimination ability of the discriminator has the greatest decline. We adopt the generator to filter distant supervision training dataset and redistribute the false positive instances into the negative set, in which way to provide a cleaned dataset for relation classification. The experimental results show that the proposed strategy significantly improves the performance of distant supervision relation extraction comparing to state-of-the-art systems.
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