Graph Neural Networks (GNN) are indispensable in learning from graph-structured data, yet their rising computational costs, especially on massively connected graphs, pose significant challenges in terms of execution performance. To tackle this, distributed-memory solutions such as partitioning the graph to concurrently train multiple replicas of GNNs are in practice. However, approaches requiring a partitioned graph usually suffer from communication overhead and load imbalance, even under optimal partitioning and communication strategies due to irregularities in the neighborhood minibatch sampling. This paper proposes practical trade-offs for improving the sampling and communication overheads for representation learning on distributed graphs (using popular GraphSAGE architecture) by developing a parameterized continuous prefetch and eviction scheme on top of the state-of-the-art Amazon DistDGL distributed GNN framework, demonstrating about 15-40% improvement in end-to-end training performance on the National Energy Research Scientific Computing Center's (NERSC) Perlmutter supercomputer for various OGB datasets.
Vision-Language Models (VLMs) trained via contrastive learning have achieved notable success in natural image tasks. However, their application in the medical domain remains limited due to the scarcity of openly accessible, large-scale medical image-text datasets. Existing medical VLMs either train on closed-source proprietary or relatively small open-source datasets that do not generalize well. Similarly, most models remain specific to a single or limited number of medical imaging domains, again restricting their applicability to other modalities. To address this gap, we introduce UniMed, a large-scale, open-source multi-modal medical dataset comprising over 5.3 million image-text pairs across six diverse imaging modalities: X-ray, CT, MRI, Ultrasound, Pathology, and Fundus. UniMed is developed using a data-collection framework that leverages Large Language Models (LLMs) to transform modality-specific classification datasets into image-text formats while incorporating existing image-text data from the medical domain, facilitating scalable VLM pretraining. Using UniMed, we trained UniMed-CLIP, a unified VLM for six modalities that significantly outperforms existing generalist VLMs and matches modality-specific medical VLMs, achieving notable gains in zero-shot evaluations. For instance, UniMed-CLIP improves over BiomedCLIP (trained on proprietary data) by an absolute gain of +12.61, averaged over 21 datasets, while using 3x less training data. To facilitate future research, we release UniMed dataset, training codes, and models at //github.com/mbzuai-oryx/UniMed-CLIP.
Diffusion Probability Models (DPMs) have made impressive advancements in various machine learning domains. However, achieving high-quality synthetic samples typically involves performing a large number of sampling steps, which impedes the possibility of real-time sample synthesis. Traditional accelerated sampling algorithms via knowledge distillation rely on pre-trained model weights and discrete time step scenarios, necessitating additional training sessions to achieve their goals. To address these issues, we propose the Catch-Up Distillation (CUD), which encourages the current moment output of the velocity estimation model ``catch up'' with its previous moment output. Specifically, CUD adjusts the original Ordinary Differential Equation (ODE) training objective to align the current moment output with both the ground truth label and the previous moment output, utilizing Runge-Kutta-based multi-step alignment distillation for precise ODE estimation while preventing asynchronous updates. Furthermore, we investigate the design space for CUDs under continuous time-step scenarios and analyze how to determine the suitable strategies. To demonstrate CUD's effectiveness, we conduct thorough ablation and comparison experiments on CIFAR-10, MNIST, and ImageNet-64. On CIFAR-10, we obtain a FID of 2.80 by sampling in 15 steps under one-session training and the new state-of-the-art FID of 3.37 by sampling in one step with additional training. This latter result necessitated only 620k iterations with a batch size of 128, in contrast to Consistency Distillation, which demanded 2100k iterations with a larger batch size of 256. Our code is released at //anonymous.4open.science/r/Catch-Up-Distillation-E31F.
The choice of data representation is a key factor in the success of deep learning in geometric tasks. For instance, DUSt3R has recently introduced the concept of viewpoint-invariant point maps, generalizing depth prediction, and showing that one can reduce all the key problems in the 3D reconstruction of static scenes to predicting such point maps. In this paper, we develop an analogous concept for a very different problem, namely, the reconstruction of the 3D shape and pose of deformable objects. To this end, we introduce the Dual Point Maps (DualPM), where a pair of point maps is extracted from the same image, one associating pixels to their 3D locations on the object, and the other to a canonical version of the object at rest pose. We also extend point maps to amodal reconstruction, seeing through self-occlusions to obtain the complete shape of the object. We show that 3D reconstruction and 3D pose estimation reduce to the prediction of the DualPMs. We demonstrate empirically that this representation is a good target for a deep network to predict; specifically, we consider modeling horses, showing that DualPMs can be trained purely on 3D synthetic data, consisting of a single model of a horse, while generalizing very well to real images. With this, we improve by a large margin previous methods for the 3D analysis and reconstruction of this type of objects.
Unsupervised Outlier Detection (UOD) is a critical task in data mining and machine learning, aiming to identify instances that significantly deviate from the majority. Without any label, deep UOD methods struggle with the misalignment between the model's direct optimization goal and the final performance goal of Outlier Detection (OD) task. Through the perspective of training dynamics, this paper proposes an early stopping algorithm to optimize the training of deep UOD models, ensuring they perform optimally in OD rather than overfitting the entire contaminated dataset. Inspired by UOD mechanism and inlier priority phenomenon, where intuitively models fit inliers more quickly than outliers, we propose GradStop, a sampling-based label-free algorithm to estimate model's real-time performance during training. First, a sampling method generates two sets: one likely containing more outliers and the other more inliers, then a metric based on gradient cohesion is applied to probe into current training dynamics, which reflects model's performance on OD task. Experimental results on 4 deep UOD algorithms and 47 real-world datasets and theoretical proofs demonstrate the effectiveness of our proposed early stopping algorithm in enhancing the performance of deep UOD models. Auto Encoder (AE) enhanced by GradStop achieves better performance than itself, other SOTA UOD methods, and even ensemble AEs. Our method provides a robust and effective solution to the problem of performance degradation during training, enabling deep UOD models to achieve better potential in anomaly detection tasks.
Large Language Models (LLMs) have demonstrated impressive capabilities in code completion tasks, where they assist developers by predicting and generating new code in real-time. However, existing LLM-based code completion systems primarily rely on the immediate context of the file being edited, often missing valuable repository-level information, user behaviour and edit history that could improve suggestion accuracy. Additionally, challenges such as efficiently retrieving relevant code snippets from large repositories, incorporating user behavior, and balancing accuracy with low-latency requirements in production environments remain unresolved. In this paper, we propose ContextModule, a framework designed to enhance LLM-based code completion by retrieving and integrating three types of contextual information from the repository: user behavior-based code, similar code snippets, and critical symbol definitions. By capturing user interactions across files and leveraging repository-wide static analysis, ContextModule improves the relevance and precision of generated code. We implement performance optimizations, such as index caching, to ensure the system meets the latency constraints of real-world coding environments. Experimental results and industrial practise demonstrate that ContextModule significantly improves code completion accuracy and user acceptance rates.
Deep learning has become the dominant approach in coping with various tasks in Natural LanguageProcessing (NLP). Although text inputs are typically represented as a sequence of tokens, there isa rich variety of NLP problems that can be best expressed with a graph structure. As a result, thereis a surge of interests in developing new deep learning techniques on graphs for a large numberof NLP tasks. In this survey, we present a comprehensive overview onGraph Neural Networks(GNNs) for Natural Language Processing. We propose a new taxonomy of GNNs for NLP, whichsystematically organizes existing research of GNNs for NLP along three axes: graph construction,graph representation learning, and graph based encoder-decoder models. We further introducea large number of NLP applications that are exploiting the power of GNNs and summarize thecorresponding benchmark datasets, evaluation metrics, and open-source codes. Finally, we discussvarious outstanding challenges for making the full use of GNNs for NLP as well as future researchdirections. To the best of our knowledge, this is the first comprehensive overview of Graph NeuralNetworks for Natural Language Processing.
When learning tasks over time, artificial neural networks suffer from a problem known as Catastrophic Forgetting (CF). This happens when the weights of a network are overwritten during the training of a new task causing forgetting of old information. To address this issue, we propose MetA Reusable Knowledge or MARK, a new method that fosters weight reusability instead of overwriting when learning a new task. Specifically, MARK keeps a set of shared weights among tasks. We envision these shared weights as a common Knowledge Base (KB) that is not only used to learn new tasks, but also enriched with new knowledge as the model learns new tasks. Key components behind MARK are two-fold. On the one hand, a metalearning approach provides the key mechanism to incrementally enrich the KB with new knowledge and to foster weight reusability among tasks. On the other hand, a set of trainable masks provides the key mechanism to selectively choose from the KB relevant weights to solve each task. By using MARK, we achieve state of the art results in several popular benchmarks, surpassing the best performing methods in terms of average accuracy by over 10% on the 20-Split-MiniImageNet dataset, while achieving almost zero forgetfulness using 55% of the number of parameters. Furthermore, an ablation study provides evidence that, indeed, MARK is learning reusable knowledge that is selectively used by each task.
Generative Adversarial networks (GANs) have obtained remarkable success in many unsupervised learning tasks and unarguably, clustering is an important unsupervised learning problem. While one can potentially exploit the latent-space back-projection in GANs to cluster, we demonstrate that the cluster structure is not retained in the GAN latent space. In this paper, we propose ClusterGAN as a new mechanism for clustering using GANs. By sampling latent variables from a mixture of one-hot encoded variables and continuous latent variables, coupled with an inverse network (which projects the data to the latent space) trained jointly with a clustering specific loss, we are able to achieve clustering in the latent space. Our results show a remarkable phenomenon that GANs can preserve latent space interpolation across categories, even though the discriminator is never exposed to such vectors. We compare our results with various clustering baselines and demonstrate superior performance on both synthetic and real datasets.
ASR (automatic speech recognition) systems like Siri, Alexa, Google Voice or Cortana has become quite popular recently. One of the key techniques enabling the practical use of such systems in people's daily life is deep learning. Though deep learning in computer vision is known to be vulnerable to adversarial perturbations, little is known whether such perturbations are still valid on the practical speech recognition. In this paper, we not only demonstrate such attacks can happen in reality, but also show that the attacks can be systematically conducted. To minimize users' attention, we choose to embed the voice commands into a song, called CommandSong. In this way, the song carrying the command can spread through radio, TV or even any media player installed in the portable devices like smartphones, potentially impacting millions of users in long distance. In particular, we overcome two major challenges: minimizing the revision of a song in the process of embedding commands, and letting the CommandSong spread through the air without losing the voice "command". Our evaluation demonstrates that we can craft random songs to "carry" any commands and the modify is extremely difficult to be noticed. Specially, the physical attack that we play the CommandSongs over the air and record them can success with 94 percentage.
Convolutional Neural Networks (CNNs) have gained significant traction in the field of machine learning, particularly due to their high accuracy in visual recognition. Recent works have pushed the performance of GPU implementations of CNNs to significantly improve their classification and training times. With these improvements, many frameworks have become available for implementing CNNs on both CPUs and GPUs, with no support for FPGA implementations. In this work we present a modified version of the popular CNN framework Caffe, with FPGA support. This allows for classification using CNN models and specialized FPGA implementations with the flexibility of reprogramming the device when necessary, seamless memory transactions between host and device, simple-to-use test benches, and the ability to create pipelined layer implementations. To validate the framework, we use the Xilinx SDAccel environment to implement an FPGA-based Winograd convolution engine and show that the FPGA layer can be used alongside other layers running on a host processor to run several popular CNNs (AlexNet, GoogleNet, VGG A, Overfeat). The results show that our framework achieves 50 GFLOPS across 3x3 convolutions in the benchmarks. This is achieved within a practical framework, which will aid in future development of FPGA-based CNNs.