The posterior collapse phenomenon in variational autoencoders (VAEs), where the variational posterior distribution closely matches the prior distribution, can hinder the quality of the learned latent variables. As a consequence of posterior collapse, the latent variables extracted by the encoder in VAEs preserve less information from the input data and thus fail to produce meaningful representations as input to the reconstruction process in the decoder. While this phenomenon has been an actively addressed topic related to VAEs performance, the theory for posterior collapse remains underdeveloped, especially beyond the standard VAEs. In this work, we advance the theoretical understanding of posterior collapse to two important and prevalent yet less studied classes of VAEs: conditional VAEs and hierarchical VAEs. Specifically, via a non-trivial theoretical analysis of linear conditional VAEs and hierarchical VAEs with two levels of latent, we prove that the cause of posterior collapses in these models includes the correlation between the input and output of the conditional VAEs and the effect of learnable encoder variance in the hierarchical VAEs. We empirically validate our theoretical findings for linear conditional and hierarchical VAEs and demonstrate that these results are also predictive for non-linear cases.
Bayesian analysis has become an indispensable tool across many different cosmological fields including the study of gravitational waves, the Cosmic Microwave Background and the 21-cm signal from the Cosmic Dawn among other phenomena. The method provides a way to fit complex models to data describing key cosmological and astrophysical signals and a whole host of contaminating signals and instrumental effects modelled with 'nuisance parameters'. In this paper, we summarise a method that uses Masked Autoregressive Flows and Kernel Density Estimators to learn marginal posterior densities corresponding to core science parameters. We find that the marginal or 'nuisance-free' posteriors and the associated likelihoods have an abundance of applications including; the calculation of previously intractable marginal Kullback-Leibler divergences and marginal Bayesian Model Dimensionalities, likelihood emulation and prior emulation. We demonstrate each application using toy examples, examples from the field of 21-cm cosmology and samples from the Dark Energy Survey. We discuss how marginal summary statistics like the Kullback-Leibler divergences and Bayesian Model Dimensionalities can be used to examine the constraining power of different experiments and how we can perform efficient joint analysis by taking advantage of marginal prior and likelihood emulators. We package our multipurpose code up in the pip-installable code margarine for use in the wider scientific community.
Learning generic high-dimensional tasks is notably hard, as it requires a number of training data exponential in the dimension. Yet, deep convolutional neural networks (CNNs) have shown remarkable success in overcoming this challenge. A popular hypothesis is that learnable tasks are highly structured and that CNNs leverage this structure to build a low-dimensional representation of the data. However, little is known about how much training data they require, and how this number depends on the data structure. This paper answers this question for a simple classification task that seeks to capture relevant aspects of real data: the Random Hierarchy Model. In this model, each of the $n_c$ classes corresponds to $m$ synonymic compositions of high-level features, which are in turn composed of sub-features through an iterative process repeated $L$ times. We find that the number of training data $P^*$ required by deep CNNs to learn this task (i) grows asymptotically as $n_c m^L$, which is only polynomial in the input dimensionality; (ii) coincides with the training set size such that the representation of a trained network becomes invariant to exchanges of synonyms; (iii) corresponds to the number of data at which the correlations between low-level features and classes become detectable. Overall, our results indicate how deep CNNs can overcome the curse of dimensionality by building invariant representations, and provide an estimate of the number of data required to learn a task based on its hierarchically compositional structure.
To quantify uncertainties in inverse problems of partial differential equations (PDEs), we formulate them into statistical inference problems using Bayes' formula. Recently, well-justified infinite-dimensional Bayesian analysis methods have been developed to construct dimension-independent algorithms. However, there are three challenges for these infinite-dimensional Bayesian methods: prior measures usually act as regularizers and are not able to incorporate prior information efficiently; complex noises, such as more practical non-i.i.d. distributed noises, are rarely considered; and time-consuming forward PDE solvers are needed to estimate posterior statistical quantities. To address these issues, an infinite-dimensional inference framework has been proposed based on the infinite-dimensional variational inference method and deep generative models. Specifically, by introducing some measure equivalence assumptions, we derive the evidence lower bound in the infinite-dimensional setting and provide possible parametric strategies that yield a general inference framework called the Variational Inverting Network (VINet). This inference framework can encode prior and noise information from learning examples. In addition, relying on the power of deep neural networks, the posterior mean and variance can be efficiently and explicitly generated in the inference stage. In numerical experiments, we design specific network structures that yield a computable VINet from the general inference framework. Numerical examples of linear inverse problems of an elliptic equation and the Helmholtz equation are presented to illustrate the effectiveness of the proposed inference framework.
Self-supervised representation learning (SSRL) has gained increasing attention in point cloud understanding, in addressing the challenges posed by 3D data scarcity and high annotation costs. This paper presents PCExpert, a novel SSRL approach that reinterprets point clouds as "specialized images". This conceptual shift allows PCExpert to leverage knowledge derived from large-scale image modality in a more direct and deeper manner, via extensively sharing the parameters with a pre-trained image encoder in a multi-way Transformer architecture. The parameter sharing strategy, combined with a novel pretext task for pre-training, i.e., transformation estimation, empowers PCExpert to outperform the state of the arts in a variety of tasks, with a remarkable reduction in the number of trainable parameters. Notably, PCExpert's performance under LINEAR fine-tuning (e.g., yielding a 90.02% overall accuracy on ScanObjectNN) has already approached the results obtained with FULL model fine-tuning (92.66%), demonstrating its effective and robust representation capability.
Recently developed reduced-order modeling techniques aim to approximate nonlinear dynamical systems on low-dimensional manifolds learned from data. This is an effective approach for modeling dynamics in a post-transient regime where the effects of initial conditions and other disturbances have decayed. However, modeling transient dynamics near an underlying manifold, as needed for real-time control and forecasting applications, is complicated by the effects of fast dynamics and nonnormal sensitivity mechanisms. To begin to address these issues, we introduce a parametric class of nonlinear projections described by constrained autoencoder neural networks in which both the manifold and the projection fibers are learned from data. Our architecture uses invertible activation functions and biorthogonal weight matrices to ensure that the encoder is a left inverse of the decoder. We also introduce new dynamics-aware cost functions that promote learning of oblique projection fibers that account for fast dynamics and nonnormality. To demonstrate these methods and the specific challenges they address, we provide a detailed case study of a three-state model of vortex shedding in the wake of a bluff body immersed in a fluid, which has a two-dimensional slow manifold that can be computed analytically. In anticipation of future applications to high-dimensional systems, we also propose several techniques for constructing computationally efficient reduced-order models using our proposed nonlinear projection framework. This includes a novel sparsity-promoting penalty for the encoder that avoids detrimental weight matrix shrinkage via computation on the Grassmann manifold.
Fibre orientation distribution (FOD) reconstruction using deep learning has the potential to produce accurate FODs from a reduced number of diffusion-weighted images (DWIs), decreasing total imaging time. Diffusion acquisition invariant representations of the DWI signals are typically used as input to these methods to ensure that they can be applied flexibly to data with different b-vectors and b-values; however, this means the network cannot condition its output directly on the DWI signal. In this work, we propose a spherical deconvolution network, a model-driven deep learning FOD reconstruction architecture, that ensures intermediate and output FODs produced by the network are consistent with the input DWI signals. Furthermore, we implement a fixel classification penalty within our loss function, encouraging the network to produce FODs that can subsequently be segmented into the correct number of fixels and improve downstream fixel-based analysis. Our results show that the model-based deep learning architecture achieves competitive performance compared to a state-of-the-art FOD super-resolution network, FOD-Net. Moreover, we show that the fixel classification penalty can be tuned to offer improved performance with respect to metrics that rely on accurately segmented of FODs. Our code is publicly available at //github.com/Jbartlett6/SDNet .
Sequential recommendation as an emerging topic has attracted increasing attention due to its important practical significance. Models based on deep learning and attention mechanism have achieved good performance in sequential recommendation. Recently, the generative models based on Variational Autoencoder (VAE) have shown the unique advantage in collaborative filtering. In particular, the sequential VAE model as a recurrent version of VAE can effectively capture temporal dependencies among items in user sequence and perform sequential recommendation. However, VAE-based models suffer from a common limitation that the representational ability of the obtained approximate posterior distribution is limited, resulting in lower quality of generated samples. This is especially true for generating sequences. To solve the above problem, in this work, we propose a novel method called Adversarial and Contrastive Variational Autoencoder (ACVAE) for sequential recommendation. Specifically, we first introduce the adversarial training for sequence generation under the Adversarial Variational Bayes (AVB) framework, which enables our model to generate high-quality latent variables. Then, we employ the contrastive loss. The latent variables will be able to learn more personalized and salient characteristics by minimizing the contrastive loss. Besides, when encoding the sequence, we apply a recurrent and convolutional structure to capture global and local relationships in the sequence. Finally, we conduct extensive experiments on four real-world datasets. The experimental results show that our proposed ACVAE model outperforms other state-of-the-art methods.
Graph Neural Networks (GNNs) draw their strength from explicitly modeling the topological information of structured data. However, existing GNNs suffer from limited capability in capturing the hierarchical graph representation which plays an important role in graph classification. In this paper, we innovatively propose hierarchical graph capsule network (HGCN) that can jointly learn node embeddings and extract graph hierarchies. Specifically, disentangled graph capsules are established by identifying heterogeneous factors underlying each node, such that their instantiation parameters represent different properties of the same entity. To learn the hierarchical representation, HGCN characterizes the part-whole relationship between lower-level capsules (part) and higher-level capsules (whole) by explicitly considering the structure information among the parts. Experimental studies demonstrate the effectiveness of HGCN and the contribution of each component.
We introduce an effective model to overcome the problem of mode collapse when training Generative Adversarial Networks (GAN). Firstly, we propose a new generator objective that finds it better to tackle mode collapse. And, we apply an independent Autoencoders (AE) to constrain the generator and consider its reconstructed samples as "real" samples to slow down the convergence of discriminator that enables to reduce the gradient vanishing problem and stabilize the model. Secondly, from mappings between latent and data spaces provided by AE, we further regularize AE by the relative distance between the latent and data samples to explicitly prevent the generator falling into mode collapse setting. This idea comes when we find a new way to visualize the mode collapse on MNIST dataset. To the best of our knowledge, our method is the first to propose and apply successfully the relative distance of latent and data samples for stabilizing GAN. Thirdly, our proposed model, namely Generative Adversarial Autoencoder Networks (GAAN), is stable and has suffered from neither gradient vanishing nor mode collapse issues, as empirically demonstrated on synthetic, MNIST, MNIST-1K, CelebA and CIFAR-10 datasets. Experimental results show that our method can approximate well multi-modal distribution and achieve better results than state-of-the-art methods on these benchmark datasets. Our model implementation is published here: //github.com/tntrung/gaan
Image segmentation is considered to be one of the critical tasks in hyperspectral remote sensing image processing. Recently, convolutional neural network (CNN) has established itself as a powerful model in segmentation and classification by demonstrating excellent performances. The use of a graphical model such as a conditional random field (CRF) contributes further in capturing contextual information and thus improving the segmentation performance. In this paper, we propose a method to segment hyperspectral images by considering both spectral and spatial information via a combined framework consisting of CNN and CRF. We use multiple spectral cubes to learn deep features using CNN, and then formulate deep CRF with CNN-based unary and pairwise potential functions to effectively extract the semantic correlations between patches consisting of three-dimensional data cubes. Effective piecewise training is applied in order to avoid the computationally expensive iterative CRF inference. Furthermore, we introduce a deep deconvolution network that improves the segmentation masks. We also introduce a new dataset and experimented our proposed method on it along with several widely adopted benchmark datasets to evaluate the effectiveness of our method. By comparing our results with those from several state-of-the-art models, we show the promising potential of our method.