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The pervasive role played by software in virtually all industries has fostered ever-increasing development of applied research in software engineering. In this chapter, we contribute our experience in using the V-Model as a framework for teaching how to conduct applied research in empirical software engineering. The foundational idea of using the V-Model is presented, and guidance for using it to frame the research is provided. Furthermore, we show how the framework has been instantiated throughout nearly two decades of PhD theses done at the University of Kaiserslautern (RPTU Kaiserslautern) in partnership with Fraunhofer IESE, including the most frequent usage patterns, how the different empirical methods fit into the framework, and the lessons we have learned from this experience.

Retrieval-augmented Large Language Models (LLMs) have reshaped traditional query-answering systems, offering unparalleled user experiences. However, existing retrieval techniques often struggle to handle multi-modal query contexts. In this paper, we present an interactive Multi-modal Query Answering (MQA) system, empowered by our newly developed multi-modal retrieval framework and navigation graph index, integrated with cutting-edge LLMs. It comprises five core components: Data Preprocessing, Vector Representation, Index Construction, Query Execution, and Answer Generation, all orchestrated by a dedicated coordinator to ensure smooth data flow from input to answer generation. One notable aspect of MQA is its utilization of contrastive learning to assess the significance of different modalities, facilitating precise measurement of multi-modal information similarity. Furthermore, the system achieves efficient retrieval through our advanced navigation graph index, refined using computational pruning techniques. Another highlight of our system is its pluggable processing framework, allowing seamless integration of embedding models, graph indexes, and LLMs. This flexibility provides users diverse options for gaining insights from their multi-modal knowledge base. A preliminary video introduction of MQA is available at //youtu.be/xvUuo2ZIqWk.

Quantum low-density parity-check (qLDPC) codes offer a promising route to scalable fault-tolerant quantum computation with constant overhead. Recent advancements have shown that qLDPC codes can outperform the quantum memory capability of surface codes even with near-term hardware. The question of how to implement logical gates fault-tolerantly for these codes is still open. We present new examples of high-rate bivariate bicycle (BB) codes with enhanced symmetry properties. These codes feature explicit nice bases of logical operators (similar to toric codes) and support fold-transversal Clifford gates without overhead. As examples, we construct $[[98,6,12]]$ and $[[162, 8, 12]]$ BB codes which admit interesting fault-tolerant Clifford gates. Our work also lays the mathematical foundations for explicit bases of logical operators and fold-transversal gates in quantum two-block and group algebra codes, which might be of independent interest.

Legged robots are physically capable of navigating a diverse variety of environments and overcoming a wide range of obstructions. For example, in a search and rescue mission, a legged robot could climb over debris, crawl through gaps, and navigate out of dead ends. However, the robot's controller needs to respond intelligently to such varied obstacles, and this requires handling unexpected and unusual scenarios successfully. This presents an open challenge to current learning methods, which often struggle with generalization to the long tail of unexpected situations without heavy human supervision. To address this issue, we investigate how to leverage the broad knowledge about the structure of the world and commonsense reasoning capabilities of vision-language models (VLMs) to aid legged robots in handling difficult, ambiguous situations. We propose a system, VLM-Predictive Control (VLM-PC), combining two key components that we find to be crucial for eliciting on-the-fly, adaptive behavior selection with VLMs: (1) in-context adaptation over previous robot interactions and (2) planning multiple skills into the future and replanning. We evaluate VLM-PC on several challenging real-world obstacle courses, involving dead ends and climbing and crawling, on a Go1 quadruped robot. Our experiments show that by reasoning over the history of interactions and future plans, VLMs enable the robot to autonomously perceive, navigate, and act in a wide range of complex scenarios that would otherwise require environment-specific engineering or human guidance.

Molecular design and synthesis planning are two critical steps in the process of molecular discovery that we propose to formulate as a single shared task of conditional synthetic pathway generation. We report an amortized approach to generate synthetic pathways as a Markov decision process conditioned on a target molecular embedding. This approach allows us to conduct synthesis planning in a bottom-up manner and design synthesizable molecules by decoding from optimized conditional codes, demonstrating the potential to solve both problems of design and synthesis simultaneously. The approach leverages neural networks to probabilistically model the synthetic trees, one reaction step at a time, according to reactivity rules encoded in a discrete action space of reaction templates. We train these networks on hundreds of thousands of artificial pathways generated from a pool of purchasable compounds and a list of expert-curated templates. We validate our method with (a) the recovery of molecules using conditional generation, (b) the identification of synthesizable structural analogs, and (c) the optimization of molecular structures given oracle functions relevant to drug discovery.

This work considers the question of how convenient access to copious data impacts our ability to learn causal effects and relations. In what ways is learning causality in the era of big data different from -- or the same as -- the traditional one? To answer this question, this survey provides a comprehensive and structured review of both traditional and frontier methods in learning causality and relations along with the connections between causality and machine learning. This work points out on a case-by-case basis how big data facilitates, complicates, or motivates each approach.

We introduce a multi-task setup of identifying and classifying entities, relations, and coreference clusters in scientific articles. We create SciERC, a dataset that includes annotations for all three tasks and develop a unified framework called Scientific Information Extractor (SciIE) for with shared span representations. The multi-task setup reduces cascading errors between tasks and leverages cross-sentence relations through coreference links. Experiments show that our multi-task model outperforms previous models in scientific information extraction without using any domain-specific features. We further show that the framework supports construction of a scientific knowledge graph, which we use to analyze information in scientific literature.

We introduce a generic framework that reduces the computational cost of object detection while retaining accuracy for scenarios where objects with varied sizes appear in high resolution images. Detection progresses in a coarse-to-fine manner, first on a down-sampled version of the image and then on a sequence of higher resolution regions identified as likely to improve the detection accuracy. Built upon reinforcement learning, our approach consists of a model (R-net) that uses coarse detection results to predict the potential accuracy gain for analyzing a region at a higher resolution and another model (Q-net) that sequentially selects regions to zoom in. Experiments on the Caltech Pedestrians dataset show that our approach reduces the number of processed pixels by over 50% without a drop in detection accuracy. The merits of our approach become more significant on a high resolution test set collected from YFCC100M dataset, where our approach maintains high detection performance while reducing the number of processed pixels by about 70% and the detection time by over 50%.

High spectral dimensionality and the shortage of annotations make hyperspectral image (HSI) classification a challenging problem. Recent studies suggest that convolutional neural networks can learn discriminative spatial features, which play a paramount role in HSI interpretation. However, most of these methods ignore the distinctive spectral-spatial characteristic of hyperspectral data. In addition, a large amount of unlabeled data remains an unexploited gold mine for efficient data use. Therefore, we proposed an integration of generative adversarial networks (GANs) and probabilistic graphical models for HSI classification. Specifically, we used a spectral-spatial generator and a discriminator to identify land cover categories of hyperspectral cubes. Moreover, to take advantage of a large amount of unlabeled data, we adopted a conditional random field to refine the preliminary classification results generated by GANs. Experimental results obtained using two commonly studied datasets demonstrate that the proposed framework achieved encouraging classification accuracy using a small number of data for training.

In this paper, we propose the joint learning attention and recurrent neural network (RNN) models for multi-label classification. While approaches based on the use of either model exist (e.g., for the task of image captioning), training such existing network architectures typically require pre-defined label sequences. For multi-label classification, it would be desirable to have a robust inference process, so that the prediction error would not propagate and thus affect the performance. Our proposed model uniquely integrates attention and Long Short Term Memory (LSTM) models, which not only addresses the above problem but also allows one to identify visual objects of interests with varying sizes without the prior knowledge of particular label ordering. More importantly, label co-occurrence information can be jointly exploited by our LSTM model. Finally, by advancing the technique of beam search, prediction of multiple labels can be efficiently achieved by our proposed network model.