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It is hard to collect enough flaw images for training deep learning network in industrial production. Therefore, existing industrial anomaly detection methods prefer to use CNN-based unsupervised detection and localization network to achieve this task. However, these methods always fail when there are varieties happened in new signals since traditional end-to-end networks suffer barriers of fitting nonlinear model in high-dimensional space. Moreover, they have a memory library by clustering the feature of normal images essentially, which cause it is not robust to texture change. To this end, we propose the Vision Transformer based (VIT-based) unsupervised anomaly detection network. It utilizes a hierarchical task learning and human experience to enhance its interpretability. Our network consists of pattern generation and comparison networks. Pattern generation network uses two VIT-based encoder modules to extract the feature of two consecutive image patches, then uses VIT-based decoder module to learn the human designed style of these features and predict the third image patch. After this, we use the Siamese-based network to compute the similarity of the generation image patch and original image patch. Finally, we refine the anomaly localization by the bi-directional inference strategy. Comparison experiments on public dataset MVTec dataset show our method achieves 99.8% AUC, which surpasses previous state-of-the-art methods. In addition, we give a qualitative illustration on our own leather and cloth datasets. The accurate segment results strongly prove the accuracy of our method in anomaly detection.

Scene graph generation (SGG) is designed to extract (subject, predicate, object) triplets in images. Recent works have made a steady progress on SGG, and provide useful tools for high-level vision and language understanding. However, due to the data distribution problems including long-tail distribution and semantic ambiguity, the predictions of current SGG models tend to collapse to several frequent but uninformative predicates (e.g., on, at), which limits practical application of these models in downstream tasks. To deal with the problems above, we propose a novel Internal and External Data Transfer (IETrans) method, which can be applied in a plug-and-play fashion and expanded to large SGG with 1,807 predicate classes. Our IETrans tries to relieve the data distribution problem by automatically creating an enhanced dataset that provides more sufficient and coherent annotations for all predicates. By training on the enhanced dataset, a Neural Motif model doubles the macro performance while maintaining competitive micro performance. The code and data are publicly available at //github.com/waxnkw/IETrans-SGG.pytorch.

Passive acoustic monitoring is a promising method for surveying wildlife populations that are easier to detect acoustically than visually. When animal vocalisations can be uniquely identified on an array of several sensors, the potential exists to estimate population density through acoustic spatial capture-recapture (ASCR). Detections need to be correctly identified and associated across sensors so that capture histories can be built. However, sound classification is imperfect, and in some situations a high proportion of sounds detected on just a single sensor ("singletons") are not from the target species, i.e., are false positives. We present a case study of bowhead whale calls (Baleana mysticetus) collected in the Beaufort Sea in 2010. We propose a novel extension of ASCR that is robust to these false positives by conditioning on calls being detected by at least two sensors. We allow for individual-level detection heterogeneity through modelling a variable sound source level, we model an inhomogeneous call spatial density, and we include bearings with varying measurement error. We show via simulation based on the case study that the method produces near-unbiased estimates when correctly specified. Ignoring source level variation resulted in a strong negative bias, while ignoring inhomogeneous density resulted in severe positive bias. The case study analysis indicated a band of higher call density approximately 30km from shore; 60.7% of singletons were estimated to have been false positives.

Finding a globally optimal Bayesian Network using exhaustive search is a problem with super-exponential complexity, which severely restricts the number of variables that it can work for. We implement a dynamic programming based algorithm with built-in dimensionality reduction and parent set identification. This reduces the search space drastically and can be applied to large-dimensional data. We use what we call generational orderings based search for optimal networks, which is a novel way to efficiently search the space of possible networks given the possible parent sets. The algorithm supports both continuous and categorical data, and categorical as well as survival outcomes. We demonstrate the efficacy of our algorithm on both synthetic and real data. In simulations, our algorithm performs better than three state-of-art algorithms that are currently used extensively. We then apply it to an Ovarian Cancer gene expression dataset with 513 genes and a survival outcome. Our algorithm is able to find an optimal network describing the disease pathway consisting of 6 genes leading to the outcome node in a few minutes on a basic computer. Our generational orderings based search for optimal networks, is both efficient and highly scalable approach to finding optimal Bayesian Networks, that can be applied to 1000s of variables. Using specifiable parameters - correlation, FDR cutoffs, and in-degree - one can increase or decrease the number of nodes and density of the networks. Availability of two scoring option-BIC and Bge-and implementation of survival outcomes and mixed data types makes our algorithm very suitable for many types of high dimensional biomedical data to find disease pathways.

Counterfactual explanations inform ways to achieve a desired outcome from a machine learning model. However, such explanations are not robust to certain real-world changes in the underlying model (e.g., retraining the model, changing hyperparameters, etc.), questioning their reliability in several applications, e.g., credit lending. In this work, we propose a novel strategy -- that we call RobX -- to generate robust counterfactuals for tree-based ensembles, e.g., XGBoost. Tree-based ensembles pose additional challenges in robust counterfactual generation, e.g., they have a non-smooth and non-differentiable objective function, and they can change a lot in the parameter space under retraining on very similar data. We first introduce a novel metric -- that we call Counterfactual Stability -- that attempts to quantify how robust a counterfactual is going to be to model changes under retraining, and comes with desirable theoretical properties. Our proposed strategy RobX works with any counterfactual generation method (base method) and searches for robust counterfactuals by iteratively refining the counterfactual generated by the base method using our metric Counterfactual Stability. We compare the performance of RobX with popular counterfactual generation methods (for tree-based ensembles) across benchmark datasets. The results demonstrate that our strategy generates counterfactuals that are significantly more robust (nearly 100% validity after actual model changes) and also realistic (in terms of local outlier factor) over existing state-of-the-art methods.

Estimation of conditional average treatment effects (CATEs) plays an essential role in modern medicine by informing treatment decision-making at a patient level. Several metalearners have been proposed recently to estimate CATEs in an effective and flexible way by re-purposing predictive machine learning models for causal estimation. In this chapter, we summarize the literature on metalearners and provide concrete guidance for their application for treatment heterogeneity estimation from randomized controlled trials' data with survival outcomes. The guidance we provide is supported by a comprehensive simulation study in which we vary the complexity of the underlying baseline risk and CATE functions, the magnitude of the heterogeneity in the treatment effect, the censoring mechanism, and the balance in treatment assignment. To demonstrate the applicability of our findings, we reanalyze the data from the Systolic Blood Pressure Intervention Trial (SPRINT) and the Action to Control Cardiovascular Risk in Diabetes (ACCORD) study. While recent literature reports the existence of heterogeneous effects of intensive blood pressure treatment with multiple treatment effect modifiers, our results suggest that many of these modifiers may be spurious discoveries. This chapter is accompanied by 'survlearners', an R package that provides well-documented implementations of the CATE estimation strategies described in this work, to allow easy use of our recommendations as well as reproduction of our numerical study.

Deep learning models used in medical image analysis are prone to raising reliability concerns due to their black-box nature. To shed light on these black-box models, previous works predominantly focus on identifying the contribution of input features to the diagnosis, i.e., feature attribution. In this work, we explore counterfactual explanations to identify what patterns the models rely on for diagnosis. Specifically, we investigate the effect of changing features within chest X-rays on the classifier's output to understand its decision mechanism. We leverage a StyleGAN-based approach (StyleEx) to create counterfactual explanations for chest X-rays by manipulating specific latent directions in their latent space. In addition, we propose EigenFind to significantly reduce the computation time of generated explanations. We clinically evaluate the relevancy of our counterfactual explanations with the help of radiologists. Our code is publicly available.

This paper presents datasets utilised for synthetic near-infrared (NIR) image generation and bounding-box level fruit detection systems. It is undeniable that high-calibre machine learning frameworks such as Tensorflow or Pytorch, and large-scale ImageNet or COCO datasets with the aid of accelerated GPU hardware have pushed the limit of machine learning techniques for more than decades. Among these breakthroughs, a high-quality dataset is one of the essential building blocks that can lead to success in model generalisation and the deployment of data-driven deep neural networks. In particular, synthetic data generation tasks often require more training samples than other supervised approaches. Therefore, in this paper, we share the NIR+RGB datasets that are re-processed from two public datasets (i.e., nirscene and SEN12MS) and our novel NIR+RGB sweet pepper(capsicum) dataset. We quantitatively and qualitatively demonstrate that these NIR+RGB datasets are sufficient to be used for synthetic NIR image generation. We achieved Frechet Inception Distance (FID) of 11.36, 26.53, and 40.15 for nirscene1, SEN12MS, and sweet pepper datasets respectively. In addition, we release manual annotations of 11 fruit bounding boxes that can be exported as various formats using cloud service. Four newly added fruits [blueberry, cherry, kiwi, and wheat] compound 11 novel bounding box datasets on top of our previous work presented in the deepFruits project [apple, avocado, capsicum, mango, orange, rockmelon, strawberry]. The total number of bounding box instances of the dataset is 162k and it is ready to use from cloud service. For the evaluation of the dataset, Yolov5 single stage detector is exploited and reported impressive mean-average-precision,mAP[0.5:0.95] results of[min:0.49, max:0.812]. We hope these datasets are useful and serve as a baseline for the future studies.

We present a novel counterfactual framework for both Zero-Shot Learning (ZSL) and Open-Set Recognition (OSR), whose common challenge is generalizing to the unseen-classes by only training on the seen-classes. Our idea stems from the observation that the generated samples for unseen-classes are often out of the true distribution, which causes severe recognition rate imbalance between the seen-class (high) and unseen-class (low). We show that the key reason is that the generation is not Counterfactual Faithful, and thus we propose a faithful one, whose generation is from the sample-specific counterfactual question: What would the sample look like, if we set its class attribute to a certain class, while keeping its sample attribute unchanged? Thanks to the faithfulness, we can apply the Consistency Rule to perform unseen/seen binary classification, by asking: Would its counterfactual still look like itself? If ``yes'', the sample is from a certain class, and ``no'' otherwise. Through extensive experiments on ZSL and OSR, we demonstrate that our framework effectively mitigates the seen/unseen imbalance and hence significantly improves the overall performance. Note that this framework is orthogonal to existing methods, thus, it can serve as a new baseline to evaluate how ZSL/OSR models generalize. Codes are available at //github.com/yue-zhongqi/gcm-cf.

We propose a new method for event extraction (EE) task based on an imitation learning framework, specifically, inverse reinforcement learning (IRL) via generative adversarial network (GAN). The GAN estimates proper rewards according to the difference between the actions committed by the expert (or ground truth) and the agent among complicated states in the environment. EE task benefits from these dynamic rewards because instances and labels yield to various extents of difficulty and the gains are expected to be diverse -- e.g., an ambiguous but correctly detected trigger or argument should receive high gains -- while the traditional RL models usually neglect such differences and pay equal attention on all instances. Moreover, our experiments also demonstrate that the proposed framework outperforms state-of-the-art methods, without explicit feature engineering.