Language models pre-trained on biomedical corpora, such as BioBERT, have recently shown promising results on downstream biomedical tasks. Many existing pre-trained models, on the other hand, are resource-intensive and computationally heavy owing to factors such as embedding size, hidden dimension, and number of layers. The natural language processing (NLP) community has developed numerous strategies to compress these models utilising techniques such as pruning, quantisation, and knowledge distillation, resulting in models that are considerably faster, smaller, and subsequently easier to use in practice. By the same token, in this paper we introduce six lightweight models, namely, BioDistilBERT, BioTinyBERT, BioMobileBERT, DistilBioBERT, TinyBioBERT, and CompactBioBERT which are obtained either by knowledge distillation from a biomedical teacher or continual learning on the Pubmed dataset via the Masked Language Modelling (MLM) objective. We evaluate all of our models on three biomedical tasks and compare them with BioBERT-v1.1 to create efficient lightweight models that perform on par with their larger counterparts. All the models will be publicly available on our Huggingface profile at //huggingface.co/nlpie and the codes used to run the experiments will be available at //github.com/nlpie-research/Compact-Biomedical-Transformers.
Recent work on enhancing BERT-based language representation models with knowledge graphs (KGs) and knowledge bases (KBs) has yielded promising results on multiple NLP tasks. State-of-the-art approaches typically integrate the original input sentences with KG triples and feed the combined representation into a BERT model. However, as the sequence length of a BERT model is limited, such a framework supports little knowledge other than the original input sentences and is thus forced to discard some knowledge. This problem is especially severe for downstream tasks for which the input is a long paragraph or even a document, such as QA or reading comprehension tasks. We address this problem with Roof-Transformer, a model with two underlying BERTs and a fusion layer on top. One underlying BERT encodes the knowledge resources and the other one encodes the original input sentences, and the fusion layer integrates the two resultant encodings. Experimental results on a QA task and the GLUE benchmark attest the effectiveness of the proposed model.
With the improvement of AI chips (e.g., GPU, TPU, and NPU) and the fast development of the Internet of Things (IoT), some robust deep neural networks (DNNs) are usually composed of millions or even hundreds of millions of parameters. Such a large model may not be suitable for directly deploying on low computation and low capacity units (e.g., edge devices). Knowledge distillation (KD) has recently been recognized as a powerful model compression method to decrease the model parameters effectively. The central concept of KD is to extract useful information from the feature maps of a large model (i.e., teacher model) as a reference to successfully train a small model (i.e., student model) in which the model size is much smaller than the teacher one. Although many KD methods have been proposed to utilize the information from the feature maps of intermediate layers in the teacher model, most did not consider the similarity of feature maps between the teacher model and the student model. As a result, it may make the student model learn useless information. Inspired by the attention mechanism, we propose a novel KD method called representative teacher key (RTK) that not only considers the similarity of feature maps but also filters out the useless information to improve the performance of the target student model. In the experiments, we validate our proposed method with several backbone networks (e.g., ResNet and WideResNet) and datasets (e.g., CIFAR10, CIFAR100, SVHN, and CINIC10). The results show that our proposed RTK can effectively improve the classification accuracy of the state-of-the-art attention-based KD method.
Pre-trained language models have attracted increasing attention in the biomedical domain, inspired by their great success in the general natural language domain. Among the two main branches of pre-trained language models in the general language domain, i.e., BERT (and its variants) and GPT (and its variants), the first one has been extensively studied in the biomedical domain, such as BioBERT and PubMedBERT. While they have achieved great success on a variety of discriminative downstream biomedical tasks, the lack of generation ability constrains their application scope. In this paper, we propose BioGPT, a domain-specific generative Transformer language model pre-trained on large scale biomedical literature. We evaluate BioGPT on six biomedical NLP tasks and demonstrate that our model outperforms previous models on most tasks. Especially, we get 44.98%, 38.42% and 40.76% F1 score on BC5CDR, KD-DTI and DDI end-to-end relation extraction tasks respectively, and 78.2% accuracy on PubMedQA, creating a new record. Our case study on text generation further demonstrates the advantage of BioGPT on biomedical literature to generate fluent descriptions for biomedical terms. Code is available at //github.com/microsoft/BioGPT.
With advancements in computer vision taking place day by day, recently a lot of light is being shed on activity recognition. With the range for real-world applications utilizing this field of study increasing across a multitude of industries such as security and healthcare, it becomes crucial for businesses to distinguish which machine learning methods perform better than others in the area. This paper strives to aid in this predicament i.e. building upon previous related work, it employs both classical and ensemble approaches on rich pose estimation (OpenPose) and HAR datasets. Making use of appropriate metrics to evaluate the performance for each model, the results show that overall, random forest yields the highest accuracy in classifying ADLs. Relatively all the models have excellent performance across both datasets, except for logistic regression and AdaBoost perform poorly in the HAR one. With the limitations of this paper also discussed in the end, the scope for further research is vast, which can use this paper as a base in aims of producing better results.
Knowledge distillation is a popular machine learning technique that aims to transfer knowledge from a large 'teacher' network to a smaller 'student' network and improve the student's performance by training it to emulate the teacher. In recent years, there has been significant progress in novel distillation techniques that push performance frontiers across multiple problems and benchmarks. Most of the reported work focuses on achieving state-of-the-art results on the specific problem. However, there has been a significant gap in understanding the process and how it behaves under certain training scenarios. Similarly, transfer learning (TL) is an effective technique in training neural networks on a limited dataset faster by reusing representations learned from a different but related problem. Despite its effectiveness and popularity, there has not been much exploration of knowledge distillation on transfer learning. In this thesis, we propose a machine learning architecture we call TL+KD that combines knowledge distillation with transfer learning; we then present a quantitative and qualitative comparison of TL+KD with TL in the domain of image classification. Through this work, we show that using guidance and knowledge from a larger teacher network during fine-tuning, we can improve the student network to achieve better validation performances like accuracy. We characterize the improvement in the validation performance of the model using a variety of metrics beyond just accuracy scores, and study its performance in scenarios such as input degradation.
Graph Neural Networks (GNNs) have gained momentum in graph representation learning and boosted the state of the art in a variety of areas, such as data mining (\emph{e.g.,} social network analysis and recommender systems), computer vision (\emph{e.g.,} object detection and point cloud learning), and natural language processing (\emph{e.g.,} relation extraction and sequence learning), to name a few. With the emergence of Transformers in natural language processing and computer vision, graph Transformers embed a graph structure into the Transformer architecture to overcome the limitations of local neighborhood aggregation while avoiding strict structural inductive biases. In this paper, we present a comprehensive review of GNNs and graph Transformers in computer vision from a task-oriented perspective. Specifically, we divide their applications in computer vision into five categories according to the modality of input data, \emph{i.e.,} 2D natural images, videos, 3D data, vision + language, and medical images. In each category, we further divide the applications according to a set of vision tasks. Such a task-oriented taxonomy allows us to examine how each task is tackled by different GNN-based approaches and how well these approaches perform. Based on the necessary preliminaries, we provide the definitions and challenges of the tasks, in-depth coverage of the representative approaches, as well as discussions regarding insights, limitations, and future directions.
The goal of text ranking is to generate an ordered list of texts retrieved from a corpus in response to a query. Although the most common formulation of text ranking is search, instances of the task can also be found in many natural language processing applications. This survey provides an overview of text ranking with neural network architectures known as transformers, of which BERT is the best-known example. The combination of transformers and self-supervised pretraining has, without exaggeration, revolutionized the fields of natural language processing (NLP), information retrieval (IR), and beyond. In this survey, we provide a synthesis of existing work as a single point of entry for practitioners who wish to gain a better understanding of how to apply transformers to text ranking problems and researchers who wish to pursue work in this area. We cover a wide range of modern techniques, grouped into two high-level categories: transformer models that perform reranking in multi-stage ranking architectures and learned dense representations that attempt to perform ranking directly. There are two themes that pervade our survey: techniques for handling long documents, beyond the typical sentence-by-sentence processing approaches used in NLP, and techniques for addressing the tradeoff between effectiveness (result quality) and efficiency (query latency). Although transformer architectures and pretraining techniques are recent innovations, many aspects of how they are applied to text ranking are relatively well understood and represent mature techniques. However, there remain many open research questions, and thus in addition to laying out the foundations of pretrained transformers for text ranking, this survey also attempts to prognosticate where the field is heading.
Since hardware resources are limited, the objective of training deep learning models is typically to maximize accuracy subject to the time and memory constraints of training and inference. We study the impact of model size in this setting, focusing on Transformer models for NLP tasks that are limited by compute: self-supervised pretraining and high-resource machine translation. We first show that even though smaller Transformer models execute faster per iteration, wider and deeper models converge in significantly fewer steps. Moreover, this acceleration in convergence typically outpaces the additional computational overhead of using larger models. Therefore, the most compute-efficient training strategy is to counterintuitively train extremely large models but stop after a small number of iterations. This leads to an apparent trade-off between the training efficiency of large Transformer models and the inference efficiency of small Transformer models. However, we show that large models are more robust to compression techniques such as quantization and pruning than small models. Consequently, one can get the best of both worlds: heavily compressed, large models achieve higher accuracy than lightly compressed, small models.
We introduce a new language representation model called BERT, which stands for Bidirectional Encoder Representations from Transformers. Unlike recent language representation models, BERT is designed to pre-train deep bidirectional representations by jointly conditioning on both left and right context in all layers. As a result, the pre-trained BERT representations can be fine-tuned with just one additional output layer to create state-of-the-art models for a wide range of tasks, such as question answering and language inference, without substantial task-specific architecture modifications. BERT is conceptually simple and empirically powerful. It obtains new state-of-the-art results on eleven natural language processing tasks, including pushing the GLUE benchmark to 80.4% (7.6% absolute improvement), MultiNLI accuracy to 86.7 (5.6% absolute improvement) and the SQuAD v1.1 question answering Test F1 to 93.2 (1.5% absolute improvement), outperforming human performance by 2.0%.
Recurrent neural nets (RNN) and convolutional neural nets (CNN) are widely used on NLP tasks to capture the long-term and local dependencies, respectively. Attention mechanisms have recently attracted enormous interest due to their highly parallelizable computation, significantly less training time, and flexibility in modeling dependencies. We propose a novel attention mechanism in which the attention between elements from input sequence(s) is directional and multi-dimensional (i.e., feature-wise). A light-weight neural net, "Directional Self-Attention Network (DiSAN)", is then proposed to learn sentence embedding, based solely on the proposed attention without any RNN/CNN structure. DiSAN is only composed of a directional self-attention with temporal order encoded, followed by a multi-dimensional attention that compresses the sequence into a vector representation. Despite its simple form, DiSAN outperforms complicated RNN models on both prediction quality and time efficiency. It achieves the best test accuracy among all sentence encoding methods and improves the most recent best result by 1.02% on the Stanford Natural Language Inference (SNLI) dataset, and shows state-of-the-art test accuracy on the Stanford Sentiment Treebank (SST), Multi-Genre natural language inference (MultiNLI), Sentences Involving Compositional Knowledge (SICK), Customer Review, MPQA, TREC question-type classification and Subjectivity (SUBJ) datasets.