Keeping track of scientific challenges, advances and emerging directions is a fundamental part of research. However, researchers face a flood of papers that hinders discovery of important knowledge. In biomedicine, this directly impacts human lives. To address this problem, we present a novel task of extraction and search of scientific challenges and directions, to facilitate rapid knowledge discovery. We construct and release an expert-annotated corpus of texts sampled from full-length papers, labeled with novel semantic categories that generalize across many types of challenges and directions. We focus on a large corpus of interdisciplinary work relating to the COVID-19 pandemic, ranging from biomedicine to areas such as AI and economics. We apply a model trained on our data to identify challenges and directions across the corpus and build a dedicated search engine. In experiments with 19 researchers and clinicians using our system, we outperform a popular scientific search engine in assisting knowledge discovery. Finally, we show that models trained on our resource generalize to the wider biomedical domain and to AI papers, highlighting its broad utility. We make our data, model and search engine publicly available. //challenges.apps.allenai.org/
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The use of semantic technologies is gaining significant traction in science communication with a wide array of applications in disciplines including the Life Sciences, Computer Science, and the Social Sciences. Languages like RDF, OWL, and other formalisms based on formal logic are applied to make scientific knowledge accessible not only to human readers but also to automated systems. These approaches have mostly focused on the structure of scientific publications themselves, on the used scientific methods and equipment, or on the structure of the used datasets. The core claims or hypotheses of scientific work have only been covered in a shallow manner, such as by linking mentioned entities to established identifiers. In this research, we therefore want to find out whether we can use existing semantic formalisms to fully express the content of high-level scientific claims using formal semantics in a systematic way. Analyzing the main claims from a sample of scientific articles from all disciplines, we find that their semantics are more complex than what a straight-forward application of formalisms like RDF or OWL account for, but we managed to elicit a clear semantic pattern which we call the 'super-pattern'. We show here how the instantiation of the five slots of this super-pattern leads to a strictly defined statement in higher-order logic. We successfully applied this super-pattern to an enlarged sample of scientific claims. We show that knowledge representation experts, when instructed to independently instantiate the super-pattern with given scientific claims, show a high degree of consistency and convergence given the complexity of the task and the subject. These results therefore open the door for expressing high-level scientific findings in a manner they can be automatically interpreted, which on the longer run can allow us to do automated consistency checking, and much more.
Disagreement is essential to scientific progress. However, the extent of disagreement in science, its evolution over time, and the fields in which it happens, remains poorly understood. Leveraging a massive collection of English-language scientific texts, we develop a cue-phrase based approach to identify instances of disagreement citations across more than four million scientific articles. Using this method, we construct an indicator of disagreement across scientific fields over the 2000-2015 period. In contrast with black-box text classification methods, our framework is transparent and easily interpretable. We reveal a disciplinary spectrum of disagreement, with higher disagreement in the social sciences and lower disagreement in physics and mathematics. However, detailed disciplinary analysis demonstrates heterogeneity across sub-fields, revealing the importance of local disciplinary cultures and epistemic characteristics of disagreement. Paper-level analysis reveals notable episodes of disagreement in science, and illustrates how methodological artifacts can confound analyses of scientific texts. These findings contribute to a broader understanding of disagreement and establish a foundation for future research to understanding key processes underlying scientific progress.
This paper seeks to develop a deeper understanding of the fundamental properties of neural text generations models. The study of artifacts that emerge in machine generated text as a result of modeling choices is a nascent research area. Previously, the extent and degree to which these artifacts surface in generated text has not been well studied. In the spirit of better understanding generative text models and their artifacts, we propose the new task of distinguishing which of several variants of a given model generated a piece of text, and we conduct an extensive suite of diagnostic tests to observe whether modeling choices (e.g., sampling methods, top-$k$ probabilities, model architectures, etc.) leave detectable artifacts in the text they generate. Our key finding, which is backed by a rigorous set of experiments, is that such artifacts are present and that different modeling choices can be inferred by observing the generated text alone. This suggests that neural text generators may be more sensitive to various modeling choices than previously thought.
Over the past few years, we have seen fundamental breakthroughs in core problems in machine learning, largely driven by advances in deep neural networks. At the same time, the amount of data collected in a wide array of scientific domains is dramatically increasing in both size and complexity. Taken together, this suggests many exciting opportunities for deep learning applications in scientific settings. But a significant challenge to this is simply knowing where to start. The sheer breadth and diversity of different deep learning techniques makes it difficult to determine what scientific problems might be most amenable to these methods, or which specific combination of methods might offer the most promising first approach. In this survey, we focus on addressing this central issue, providing an overview of many widely used deep learning models, spanning visual, sequential and graph structured data, associated tasks and different training methods, along with techniques to use deep learning with less data and better interpret these complex models --- two central considerations for many scientific use cases. We also include overviews of the full design process, implementation tips, and links to a plethora of tutorials, research summaries and open-sourced deep learning pipelines and pretrained models, developed by the community. We hope that this survey will help accelerate the use of deep learning across different scientific domains.
Due to the significance and value in human-computer interaction and natural language processing, task-oriented dialog systems are attracting more and more attention in both academic and industrial communities. In this paper, we survey recent advances and challenges in an issue-specific manner. We discuss three critical topics for task-oriented dialog systems: (1) improving data efficiency to facilitate dialog system modeling in low-resource settings, (2) modeling multi-turn dynamics for dialog policy learning to achieve better task-completion performance, and (3) integrating domain ontology knowledge into the dialog model in both pipeline and end-to-end models. We also review the recent progresses in dialog evaluation and some widely-used corpora. We believe that this survey can shed a light on future research in task-oriented dialog systems.
Structured queries expressed in languages (such as SQL, SPARQL, or XQuery) offer a convenient and explicit way for users to express their information needs for a number of tasks. In this work, we present an approach to answer these directly over text data without storing results in a database. We specifically look at the case of knowledge bases where queries are over entities and the relations between them. Our approach combines distributed query answering (e.g. Triple Pattern Fragments) with models built for extractive question answering. Importantly, by applying distributed querying answering we are able to simplify the model learning problem. We train models for a large portion (572) of the relations within Wikidata and achieve an average 0.70 F1 measure across all models. We also present a systematic method to construct the necessary training data for this task from knowledge graphs and describe a prototype implementation.
We introduce a multi-task setup of identifying and classifying entities, relations, and coreference clusters in scientific articles. We create SciERC, a dataset that includes annotations for all three tasks and develop a unified framework called Scientific Information Extractor (SciIE) for with shared span representations. The multi-task setup reduces cascading errors between tasks and leverages cross-sentence relations through coreference links. Experiments show that our multi-task model outperforms previous models in scientific information extraction without using any domain-specific features. We further show that the framework supports construction of a scientific knowledge graph, which we use to analyze information in scientific literature.
For extracting meaningful topics from texts, their structures should be considered properly. In this paper, we aim to analyze structured time-series documents such as a collection of news articles and a series of scientific papers, wherein topics evolve along time depending on multiple topics in the past and are also related to each other at each time. To this end, we propose a dynamic and static topic model, which simultaneously considers the dynamic structures of the temporal topic evolution and the static structures of the topic hierarchy at each time. We show the results of experiments on collections of scientific papers, in which the proposed method outperformed conventional models. Moreover, we show an example of extracted topic structures, which we found helpful for analyzing research activities.
Generative Adversarial Networks (GAN) have shown great promise in tasks like synthetic image generation, image inpainting, style transfer, and anomaly detection. However, generating discrete data is a challenge. This work presents an adversarial training based correlated discrete data (CDD) generation model. It also details an approach for conditional CDD generation. The results of our approach are presented over two datasets; job-seeking candidates skill set (private dataset) and MNIST (public dataset). From quantitative and qualitative analysis of these results, we show that our model performs better as it leverages inherent correlation in the data, than an existing model that overlooks correlation.
Music recommender systems (MRS) have experienced a boom in recent years, thanks to the emergence and success of online streaming services, which nowadays make available almost all music in the world at the user's fingertip. While today's MRS considerably help users to find interesting music in these huge catalogs, MRS research is still facing substantial challenges. In particular when it comes to build, incorporate, and evaluate recommendation strategies that integrate information beyond simple user--item interactions or content-based descriptors, but dig deep into the very essence of listener needs, preferences, and intentions, MRS research becomes a big endeavor and related publications quite sparse. The purpose of this trends and survey article is twofold. We first identify and shed light on what we believe are the most pressing challenges MRS research is facing, from both academic and industry perspectives. We review the state of the art towards solving these challenges and discuss its limitations. Second, we detail possible future directions and visions we contemplate for the further evolution of the field. The article should therefore serve two purposes: giving the interested reader an overview of current challenges in MRS research and providing guidance for young researchers by identifying interesting, yet under-researched, directions in the field.
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