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Persistent homology is a central methodology in topological data analysis that has been successfully implemented in many fields and is becoming increasingly popular and relevant. The output of persistent homology is a persistence diagram -- a multiset of points supported on the upper half plane -- that is often used as a statistical summary of the topological features of data. In this paper, we study the random nature of persistent homology and estimate the density of expected persistence diagrams from observations using wavelets; we show that our wavelet-based estimator is optimal. Furthermore, we propose an adaptive estimator that offers a sparse representation of the expected persistence diagram that achieves near-optimality.

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This paper is a collection of results on combinatorial properties of codes for the Z-channel. A Z-channel with error fraction $\tau$ takes as input a length-$n$ binary codeword and injects in an adversarial manner up to $n\tau$ asymmetric errors, i.e., errors that only zero out bits but do not flip $0$'s to $1$'s. It is known that the largest $(L-1)$-list-decodable code for the Z-channel with error fraction $\tau$ has exponential size (in $n$) if $\tau$ is less than a critical value that we call the $(L-1)$-list-decoding Plotkin point and has constant size if $\tau$ is larger than the threshold. The $(L-1)$-list-decoding Plotkin point is known to be $ L^{-\frac{1}{L-1}} - L^{-\frac{L}{L-1}} $, which equals $1/4$ for unique-decoding with $ L-1=1 $. In this paper, we derive various results for the size of the largest codes above and below the list-decoding Plotkin point. In particular, we show that the largest $(L-1)$-list-decodable code $\epsilon$-above the Plotkin point, {for any given sufficiently small positive constant $ \epsilon>0 $,} has size $\Theta_L(\epsilon^{-3/2})$ for any $L-1\ge1$. We also devise upper and lower bounds on the exponential size of codes below the list-decoding Plotkin point.

The chain graph model admits both undirected and directed edges in one graph, where symmetric conditional dependencies are encoded via undirected edges and asymmetric causal relations are encoded via directed edges. Though frequently encountered in practice, the chain graph model has been largely under investigated in literature, possibly due to the lack of identifiability conditions between undirected and directed edges. In this paper, we first establish a set of novel identifiability conditions for the Gaussian chain graph model, exploiting a low rank plus sparse decomposition of the precision matrix. Further, an efficient learning algorithm is built upon the identifiability conditions to fully recover the chain graph structure. Theoretical analysis on the proposed method is conducted, assuring its asymptotic consistency in recovering the exact chain graph structure. The advantage of the proposed method is also supported by numerical experiments on both simulated examples and a real application on the Standard & Poor 500 index data.

Randomized controlled trials (RCTs) are the gold standard for causal inference, but they are often powered only for average effects, making estimation of heterogeneous treatment effects (HTEs) challenging. Conversely, large-scale observational studies (OS) offer a wealth of data but suffer from confounding bias. Our paper presents a novel framework to leverage OS data for enhancing the efficiency in estimating conditional average treatment effects (CATEs) from RCTs while mitigating common biases. We propose an innovative approach to combine RCTs and OS data, expanding the traditionally used control arms from external sources. The framework relaxes the typical assumption of CATE invariance across populations, acknowledging the often unaccounted systematic differences between RCT and OS participants. We demonstrate this through the special case of a linear outcome model, where the CATE is sparsely different between the two populations. The core of our framework relies on learning potential outcome means from OS data and using them as a nuisance parameter in CATE estimation from RCT data. We further illustrate through experiments that using OS findings reduces the variance of the estimated CATE from RCTs and can decrease the required sample size for detecting HTEs.

A ReLU neural network leads to a finite polyhedral decomposition of input space and a corresponding finite dual graph. We show that while this dual graph is a coarse quantization of input space, it is sufficiently robust that it can be combined with persistent homology to detect homological signals of manifolds in the input space from samples. This property holds for a variety of networks trained for a wide range of purposes that have nothing to do with this topological application. We found this feature to be surprising and interesting; we hope it will also be useful.

Species distribution modeling (SDM) plays a crucial role in investigating habitat suitability and addressing various ecological issues. While likelihood analysis is commonly used to draw ecological conclusions, it has been observed that its statistical performance is not robust when faced with slight deviations due to misspecification in SDM. We propose a new robust estimation method based on a novel divergence for the Poisson point process model. The proposed method is characterized by weighting the log-likelihood equation to mitigate the impact of heterogeneous observations in the presence-only data, which can result from model misspecification. We demonstrate that the proposed method improves the predictive performance of the maximum likelihood estimation in our simulation studies and in the analysis of vascular plant data in Japan.

Dot-product attention mechanism plays a crucial role in modern deep architectures (e.g., Transformer) for sequence modeling, however, na\"ive exact computation of this model incurs quadratic time and memory complexities in sequence length, hindering the training of long-sequence models. Critical bottlenecks are due to the computation of partition functions in the denominator of softmax function as well as the multiplication of the softmax matrix with the matrix of values. Our key observation is that the former can be reduced to a variant of the kernel density estimation (KDE) problem, and an efficient KDE solver can be further utilized to accelerate the latter via subsampling-based fast matrix products. Our proposed KDEformer can approximate the attention in sub-quadratic time with provable spectral norm bounds, while all prior results merely provide entry-wise error bounds. Empirically, we verify that KDEformer outperforms other attention approximations in terms of accuracy, memory, and runtime on various pre-trained models. On BigGAN image generation, we achieve better generative scores than the exact computation with over $4\times$ speedup. For ImageNet classification with T2T-ViT, KDEformer shows over $18\times$ speedup while the accuracy drop is less than $0.5\%$.

Numerical data imputation algorithms replace missing values by estimates to leverage incomplete data sets. Current imputation methods seek to minimize the error between the unobserved ground truth and the imputed values. But this strategy can create artifacts leading to poor imputation in the presence of multimodal or complex distributions. To tackle this problem, we introduce the $k$NN$\times$KDE algorithm: a data imputation method combining nearest neighbor estimation ($k$NN) and density estimation with Gaussian kernels (KDE). We compare our method with previous data imputation methods using artificial and real-world data with different data missing scenarios and various data missing rates, and show that our method can cope with complex original data structure, yields lower data imputation errors, and provides probabilistic estimates with higher likelihood than current methods. We release the code in open-source for the community: //github.com/DeltaFloflo/knnxkde

There is a longstanding interest in capturing the error behaviour of object detectors by finding images where their performance is likely to be unsatisfactory. In real-world applications such as autonomous driving, it is also crucial to characterise potential failures beyond simple requirements of detection performance. For example, a missed detection of a pedestrian close to an ego vehicle will generally require closer inspection than a missed detection of a car in the distance. The problem of predicting such potential failures at test time has largely been overlooked in the literature and conventional approaches based on detection uncertainty fall short in that they are agnostic to such fine-grained characterisation of errors. In this work, we propose to reformulate the problem of finding "hard" images as a query-based hard image retrieval task, where queries are specific definitions of "hardness", and offer a simple and intuitive method that can solve this task for a large family of queries. Our method is entirely post-hoc, does not require ground-truth annotations, is independent of the choice of a detector, and relies on an efficient Monte Carlo estimation that uses a simple stochastic model in place of the ground-truth. We show experimentally that it can be applied successfully to a wide variety of queries for which it can reliably identify hard images for a given detector without any labelled data. We provide results on ranking and classification tasks using the widely used RetinaNet, Faster-RCNN, Mask-RCNN, and Cascade Mask-RCNN object detectors. The code for this project is available at //github.com/fiveai/hardest.

We propose a novel two-stage subsampling algorithm based on optimal design principles. In the first stage, we use a density-based clustering algorithm to identify an approximating design space for the predictors from an initial subsample. Next, we determine an optimal approximate design on this design space. Finally, we use matrix distances such as the Procrustes, Frobenius, and square-root distance to define the remaining subsample, such that its points are "closest" to the support points of the optimal design. Our approach reflects the specific nature of the information matrix as a weighted sum of non-negative definite Fisher information matrices evaluated at the design points and applies to a large class of regression models including models where the Fisher information is of rank larger than $1$.

Self-supervised learning has been widely used to obtain transferrable representations from unlabeled images. Especially, recent contrastive learning methods have shown impressive performances on downstream image classification tasks. While these contrastive methods mainly focus on generating invariant global representations at the image-level under semantic-preserving transformations, they are prone to overlook spatial consistency of local representations and therefore have a limitation in pretraining for localization tasks such as object detection and instance segmentation. Moreover, aggressively cropped views used in existing contrastive methods can minimize representation distances between the semantically different regions of a single image. In this paper, we propose a spatially consistent representation learning algorithm (SCRL) for multi-object and location-specific tasks. In particular, we devise a novel self-supervised objective that tries to produce coherent spatial representations of a randomly cropped local region according to geometric translations and zooming operations. On various downstream localization tasks with benchmark datasets, the proposed SCRL shows significant performance improvements over the image-level supervised pretraining as well as the state-of-the-art self-supervised learning methods.

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