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Diffusion MRI (dMRI) is a widely used imaging modality, but requires long scanning times to acquire high resolution datasets. By leveraging the unique geometry present within this domain, we present a novel approach to dMRI angular super-resolution that extends upon the parametric continuous convolution (PCConv) framework. We introduce several additions to the operation including a Fourier feature mapping, global coordinates, and domain specific context. Using this framework, we build a fully parametric continuous convolution network (PCCNN) and compare against existing models. We demonstrate the PCCNN performs competitively while using significantly less parameters. Moreover, we show that this formulation generalises well to clinically relevant downstream analyses such as fixel-based analysis, and neurite orientation dispersion and density imaging.

Profile likelihoods are rarely used in geostatistical models due to the computational burden imposed by repeated decompositions of large variance matrices. Accounting for uncertainty in covariance parameters can be highly consequential in geostatistical models as some covariance parameters are poorly identified, the problem is severe enough that the differentiability parameter of the Matern correlation function is typically treated as fixed. The problem is compounded with anisotropic spatial models as there are two additional parameters to consider. In this paper, we make the following contributions: 1, A methodology is created for profile likelihoods for Gaussian spatial models with Mat\'ern family of correlation functions, including anisotropic models. This methodology adopts a novel reparametrization for generation of representative points, and uses GPUs for parallel profile likelihoods computation in software implementation. 2, We show the profile likelihood of the Mat\'ern shape parameter is often quite flat but still identifiable, it can usually rule out very small values. 3, Simulation studies and applications on real data examples show that profile-based confidence intervals of covariance parameters and regression parameters have superior coverage to the traditional standard Wald type confidence intervals.

Let $G$ be an undirected graph, and $s,t$ distinguished vertices of $G$. A minimal $s,t$-separator is an inclusion-wise minimal vertex-set whose removal places $s$ and $t$ in distinct connected components. We present an algorithm for listing the minimal $s,t$-separators of a graph in non-decreasing order of cardinality, in polynomial-delay. This problem finds applications in various algorithms parameterized by treewidth, which include query evaluation in relational databases, probabilistic inference, and many more. In the process, we prove several results that are of independent interest. We establish a new island of tractability to the intensively studied 2-disjoint connected subgraphs problem, which is NP-complete even for restricted graph classes that include planar graphs, and prove new characterizations of minimal $s,t$-separators. Ours is the first to present a ranked enumeration algorithm for minimal separators where the delay is polynomial in the size of the input graph.

We propose and analyze unfitted finite element approximations for the two-phase incompressible Navier--Stokes flow in an axisymmetric setting. The discretized schemes are based on an Eulerian weak formulation for the Navier--Stokes equation in the 2d-meridian halfplane, together with a parametric formulation for the generating curve of the evolving interface. We use the lowest order Taylor--Hood and piecewise linear elements for discretizing the Navier--Stokes formulation in the bulk and the moving interface, respectively. We discuss a variety of schemes, amongst which is a linear scheme that enjoys an equidistribution property on the discrete interface and good volume conservation. An alternative scheme can be shown to be unconditionally stable and to conserve the volume of the two phases exactly. Numerical results are presented to show the robustness and accuracy of the introduced methods for simulating both rising bubble and oscillating droplet experiments.

Recently, there has been significant progress in understanding the convergence and generalization properties of gradient-based methods for training overparameterized learning models. However, many aspects including the role of small random initialization and how the various parameters of the model are coupled during gradient-based updates to facilitate good generalization remain largely mysterious. A series of recent papers have begun to study this role for non-convex formulations of symmetric Positive Semi-Definite (PSD) matrix sensing problems which involve reconstructing a low-rank PSD matrix from a few linear measurements. The underlying symmetry/PSDness is crucial to existing convergence and generalization guarantees for this problem. In this paper, we study a general overparameterized low-rank matrix sensing problem where one wishes to reconstruct an asymmetric rectangular low-rank matrix from a few linear measurements. We prove that an overparameterized model trained via factorized gradient descent converges to the low-rank matrix generating the measurements. We show that in this setting, factorized gradient descent enjoys two implicit properties: (1) coupling of the trajectory of gradient descent where the factors are coupled in various ways throughout the gradient update trajectory and (2) an algorithmic regularization property where the iterates show a propensity towards low-rank models despite the overparameterized nature of the factorized model. These two implicit properties in turn allow us to show that the gradient descent trajectory from small random initialization moves towards solutions that are both globally optimal and generalize well.

Motivated by classical work on the numerical integration of ordinary differential equations we present a ResNet-styled neural network architecture that encodes non-expansive (1-Lipschitz) operators, as long as the spectral norms of the weights are appropriately constrained. This is to be contrasted with the ordinary ResNet architecture which, even if the spectral norms of the weights are constrained, has a Lipschitz constant that, in the worst case, grows exponentially with the depth of the network. Further analysis of the proposed architecture shows that the spectral norms of the weights can be further constrained to ensure that the network is an averaged operator, making it a natural candidate for a learned denoiser in Plug-and-Play algorithms. Using a novel adaptive way of enforcing the spectral norm constraints, we show that, even with these constraints, it is possible to train performant networks. The proposed architecture is applied to the problem of adversarially robust image classification, to image denoising, and finally to the inverse problem of deblurring.

This paper aims at revisiting Graph Convolutional Neural Networks by bridging the gap between spectral and spatial design of graph convolutions. We theoretically demonstrate some equivalence of the graph convolution process regardless it is designed in the spatial or the spectral domain. The obtained general framework allows to lead a spectral analysis of the most popular ConvGNNs, explaining their performance and showing their limits. Moreover, the proposed framework is used to design new convolutions in spectral domain with a custom frequency profile while applying them in the spatial domain. We also propose a generalization of the depthwise separable convolution framework for graph convolutional networks, what allows to decrease the total number of trainable parameters by keeping the capacity of the model. To the best of our knowledge, such a framework has never been used in the GNNs literature. Our proposals are evaluated on both transductive and inductive graph learning problems. Obtained results show the relevance of the proposed method and provide one of the first experimental evidence of transferability of spectral filter coefficients from one graph to another. Our source codes are publicly available at: //github.com/balcilar/Spectral-Designed-Graph-Convolutions

Since deep neural networks were developed, they have made huge contributions to everyday lives. Machine learning provides more rational advice than humans are capable of in almost every aspect of daily life. However, despite this achievement, the design and training of neural networks are still challenging and unpredictable procedures. To lower the technical thresholds for common users, automated hyper-parameter optimization (HPO) has become a popular topic in both academic and industrial areas. This paper provides a review of the most essential topics on HPO. The first section introduces the key hyper-parameters related to model training and structure, and discusses their importance and methods to define the value range. Then, the research focuses on major optimization algorithms and their applicability, covering their efficiency and accuracy especially for deep learning networks. This study next reviews major services and toolkits for HPO, comparing their support for state-of-the-art searching algorithms, feasibility with major deep learning frameworks, and extensibility for new modules designed by users. The paper concludes with problems that exist when HPO is applied to deep learning, a comparison between optimization algorithms, and prominent approaches for model evaluation with limited computational resources.

Substantial progress has been made recently on developing provably accurate and efficient algorithms for low-rank matrix factorization via nonconvex optimization. While conventional wisdom often takes a dim view of nonconvex optimization algorithms due to their susceptibility to spurious local minima, simple iterative methods such as gradient descent have been remarkably successful in practice. The theoretical footings, however, had been largely lacking until recently. In this tutorial-style overview, we highlight the important role of statistical models in enabling efficient nonconvex optimization with performance guarantees. We review two contrasting approaches: (1) two-stage algorithms, which consist of a tailored initialization step followed by successive refinement; and (2) global landscape analysis and initialization-free algorithms. Several canonical matrix factorization problems are discussed, including but not limited to matrix sensing, phase retrieval, matrix completion, blind deconvolution, robust principal component analysis, phase synchronization, and joint alignment. Special care is taken to illustrate the key technical insights underlying their analyses. This article serves as a testament that the integrated consideration of optimization and statistics leads to fruitful research findings.

High spectral dimensionality and the shortage of annotations make hyperspectral image (HSI) classification a challenging problem. Recent studies suggest that convolutional neural networks can learn discriminative spatial features, which play a paramount role in HSI interpretation. However, most of these methods ignore the distinctive spectral-spatial characteristic of hyperspectral data. In addition, a large amount of unlabeled data remains an unexploited gold mine for efficient data use. Therefore, we proposed an integration of generative adversarial networks (GANs) and probabilistic graphical models for HSI classification. Specifically, we used a spectral-spatial generator and a discriminator to identify land cover categories of hyperspectral cubes. Moreover, to take advantage of a large amount of unlabeled data, we adopted a conditional random field to refine the preliminary classification results generated by GANs. Experimental results obtained using two commonly studied datasets demonstrate that the proposed framework achieved encouraging classification accuracy using a small number of data for training.