Many approaches to grasp synthesis optimize analytic quality metrics that measure grasp robustness based on finger placements and local surface geometry. However, generating feasible dexterous grasps by optimizing these metrics is slow, often taking minutes. To address this issue, this paper presents FRoGGeR: a method that quickly generates robust precision grasps using the min-weight metric, a novel, almost-everywhere differentiable approximation of the classical epsilon grasp metric. The min-weight metric is simple and interpretable, provides a reasonable measure of grasp robustness, and admits numerically efficient gradients for smooth optimization. We leverage these properties to rapidly synthesize collision-free robust grasps - typically in less than a second. FRoGGeR can refine the candidate grasps generated by other methods (heuristic, data-driven, etc.) and is compatible with many object representations (SDFs, meshes, etc.). We study FRoGGeR's performance on over 40 objects drawn from the YCB dataset, outperforming a competitive baseline in computation time, feasibility rate of grasp synthesis, and picking success in simulation. We conclude that FRoGGeR is fast: it has a median synthesis time of 0.834s over hundreds of experiments.
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For problems in image processing and many other fields, a large class of effective neural networks has encoder-decoder-based architectures. Although these networks have made impressive performances, mathematical explanations of their architectures are still underdeveloped. In this paper, we study the encoder-decoder-based network architecture from the algorithmic perspective and provide a mathematical explanation. We use the two-phase Potts model for image segmentation as an example for our explanations. We associate the segmentation problem with a control problem in the continuous setting. Then, multigrid method and operator splitting scheme, the PottsMGNet, are used to discretize the continuous control model. We show that the resulting discrete PottsMGNet is equivalent to an encoder-decoder-based network. With minor modifications, it is shown that a number of the popular encoder-decoder-based neural networks are just instances of the proposed PottsMGNet. By incorporating the Soft-Threshold-Dynamics into the PottsMGNet as a regularizer, the PottsMGNet has shown to be robust with the network parameters such as network width and depth and achieved remarkable performance on datasets with very large noise. In nearly all our experiments, the new network always performs better or as good on accuracy and dice score than existing networks for image segmentation.
Training large language models to follow instructions makes them perform better on a wide range of tasks, generally becoming more helpful. However, a perfectly helpful model will follow even the most malicious instructions and readily generate harmful content. In this paper, we raise concerns over the safety of models that only emphasize helpfulness, not safety, in their instruction-tuning. We show that several popular instruction-tuned models are highly unsafe. Moreover, we show that adding just 3% safety examples (a few hundred demonstrations) in the training set when fine-tuning a model like LLaMA can substantially improve their safety. Our safety-tuning does not make models significantly less capable or helpful as measured by standard benchmarks. However, we do find a behavior of exaggerated safety, where too much safety-tuning makes models refuse to respond to reasonable prompts that superficially resemble unsafe ones. Our study sheds light on trade-offs in training LLMs to follow instructions and exhibit safe behavior.
Basecalling is an essential step in nanopore sequencing analysis where the raw signals of nanopore sequencers are converted into nucleotide sequences, i.e., reads. State-of-the-art basecallers employ complex deep learning models to achieve high basecalling accuracy. This makes basecalling computationally-inefficient and memory-hungry; bottlenecking the entire genome analysis pipeline. However, for many applications, the majority of reads do no match the reference genome of interest (i.e., target reference) and thus are discarded in later steps in the genomics pipeline, wasting the basecalling computation. To overcome this issue, we propose TargetCall, the first pre-basecalling filter to eliminate the wasted computation in basecalling. TargetCall's key idea is to discard reads that will not match the target reference (i.e., off-target reads) prior to basecalling. TargetCall consists of two main components: (1) LightCall, a lightweight neural network basecaller that produces noisy reads; and (2) Similarity Check, which labels each of these noisy reads as on-target or off-target by matching them to the target reference. TargetCall aims to filter out all off-target reads before basecalling. The highly-accurate but slow basecalling is performed only on the raw signals whose noisy reads are labeled as on-target. Our thorough experimental evaluations using both real and simulated data show that TargetCall 1) improves the end-to-end basecalling performance while maintaining high sensitivity in keeping on-target reads, 2) maintains high accuracy in downstream analysis, 3) precisely filters out up to 94.71% of off-target reads, and 4) achieves better performance, throughput, sensitivity, precision, and generality compared to prior works. We open-source TargetCall at //github.com/CMU-SAFARI/TargetCall
Accurate dietary intake estimation is critical for informing policies and programs to support healthy eating, as malnutrition has been directly linked to decreased quality of life. However self-reporting methods such as food diaries suffer from substantial bias. Other conventional dietary assessment techniques and emerging alternative approaches such as mobile applications incur high time costs and may necessitate trained personnel. Recent work has focused on using computer vision and machine learning to automatically estimate dietary intake from food images, but the lack of comprehensive datasets with diverse viewpoints, modalities and food annotations hinders the accuracy and realism of such methods. To address this limitation, we introduce NutritionVerse-Synth, the first large-scale dataset of 84,984 photorealistic synthetic 2D food images with associated dietary information and multimodal annotations (including depth images, instance masks, and semantic masks). Additionally, we collect a real image dataset, NutritionVerse-Real, containing 889 images of 251 dishes to evaluate realism. Leveraging these novel datasets, we develop and benchmark NutritionVerse, an empirical study of various dietary intake estimation approaches, including indirect segmentation-based and direct prediction networks. We further fine-tune models pretrained on synthetic data with real images to provide insights into the fusion of synthetic and real data. Finally, we release both datasets (NutritionVerse-Synth, NutritionVerse-Real) on //www.kaggle.com/nutritionverse/datasets as part of an open initiative to accelerate machine learning for dietary sensing.
To plan the trajectories of a large and heterogeneous swarm, sequential or synchronous distributed methods usually become intractable, due to the lack of global connectivity and clock synchronization, Moreover, the existing asynchronously distributed schemes usually require recheck-like mechanisms instead of inherently considering the other' moving tendency. To this end, we propose a novel asynchronous protocol to allocate the agents' derivable space in a distributed way, by which each agent can replan trajectory depending on its own timetable. Properties such as collision avoidance and recursive feasibility are theoretically shown and a lower bound of protocol updating is provided. Comprehensive simulations and comparisons with five state-of-the-art methods validate the effectiveness of our method and illustrate the improvement in both the completion time and the moving distance. Finally, hardware experiments are carried out, where 8 heterogeneous unmanned ground vehicles with onboard computation navigate in cluttered scenarios at a high agility.
Based on developer needs and usage scenarios, API (Application Programming Interface) recommendation is the process of assisting developers in finding the required API among numerous candidate APIs. Previous studies mainly modeled API recommendation as the recommendation task, which can recommend multiple candidate APIs for the given query, and developers may not yet be able to find what they need. Motivated by the neural machine translation research domain, we can model this problem as the generation task, which aims to directly generate the required API for the developer query. After our preliminary investigation, we find the performance of this intuitive approach is not promising. The reason is that there exists an error when generating the prefixes of the API. However, developers may know certain API prefix information during actual development in most cases. Therefore, we model this problem as the automatic completion task and propose a novel approach APICom based on prompt learning, which can generate API related to the query according to the prompts (i.e., API prefix information). Moreover, the effectiveness of APICom highly depends on the quality of the training dataset. In this study, we further design a novel gradient-based adversarial training method {\atpart} for data augmentation, which can improve the normalized stability when generating adversarial examples. To evaluate the effectiveness of APICom, we consider a corpus of 33k developer queries and corresponding APIs. Compared with the state-of-the-art baselines, our experimental results show that APICom can outperform all baselines by at least 40.02\%, 13.20\%, and 16.31\% in terms of the performance measures EM@1, MRR, and MAP. Finally, our ablation studies confirm the effectiveness of our component setting (such as our designed adversarial training method, our used pre-trained model, and prompt learning) in APICom.
The accuracy of learning-based optical flow estimation models heavily relies on the realism of the training datasets. Current approaches for generating such datasets either employ synthetic data or generate images with limited realism. However, the domain gap of these data with real-world scenes constrains the generalization of the trained model to real-world applications. To address this issue, we investigate generating realistic optical flow datasets from real-world images. Firstly, to generate highly realistic new images, we construct a layered depth representation, known as multiplane images (MPI), from single-view images. This allows us to generate novel view images that are highly realistic. To generate optical flow maps that correspond accurately to the new image, we calculate the optical flows of each plane using the camera matrix and plane depths. We then project these layered optical flows into the output optical flow map with volume rendering. Secondly, to ensure the realism of motion, we present an independent object motion module that can separate the camera and dynamic object motion in MPI. This module addresses the deficiency in MPI-based single-view methods, where optical flow is generated only by camera motion and does not account for any object movement. We additionally devise a depth-aware inpainting module to merge new images with dynamic objects and address unnatural motion occlusions. We show the superior performance of our method through extensive experiments on real-world datasets. Moreover, our approach achieves state-of-the-art performance in both unsupervised and supervised training of learning-based models. The code will be made publicly available at: \url{//github.com/Sharpiless/MPI-Flow}.
In order for robots to safely navigate in unseen scenarios using learning-based methods, it is important to accurately detect out-of-training-distribution (OoD) situations online. Recently, Gaussian process state-space models (GPSSMs) have proven useful to discriminate unexpected observations by comparing them against probabilistic predictions. However, the capability for the model to correctly distinguish between in- and out-of-training distribution observations hinges on the accuracy of these predictions, primarily affected by the class of functions the GPSSM kernel can represent. In this paper, we propose (i) a novel approach to embed existing domain knowledge in the kernel and (ii) an OoD online runtime monitor, based on receding-horizon predictions. Domain knowledge is assumed given as a dataset collected either in simulation or using a nominal model. Numerical results show that the informed kernel yields better regression quality with smaller datasets, as compared to standard kernel choices. We demonstrate the effectiveness of the OoD monitor on a real quadruped navigating an indoor setting, which reliably classifies previously unseen terrains.
Sentiment analysis is a widely studied NLP task where the goal is to determine opinions, emotions, and evaluations of users towards a product, an entity or a service that they are reviewing. One of the biggest challenges for sentiment analysis is that it is highly language dependent. Word embeddings, sentiment lexicons, and even annotated data are language specific. Further, optimizing models for each language is very time consuming and labor intensive especially for recurrent neural network models. From a resource perspective, it is very challenging to collect data for different languages. In this paper, we look for an answer to the following research question: can a sentiment analysis model trained on a language be reused for sentiment analysis in other languages, Russian, Spanish, Turkish, and Dutch, where the data is more limited? Our goal is to build a single model in the language with the largest dataset available for the task, and reuse it for languages that have limited resources. For this purpose, we train a sentiment analysis model using recurrent neural networks with reviews in English. We then translate reviews in other languages and reuse this model to evaluate the sentiments. Experimental results show that our robust approach of single model trained on English reviews statistically significantly outperforms the baselines in several different languages.
We propose a novel attention gate (AG) model for medical imaging that automatically learns to focus on target structures of varying shapes and sizes. Models trained with AGs implicitly learn to suppress irrelevant regions in an input image while highlighting salient features useful for a specific task. This enables us to eliminate the necessity of using explicit external tissue/organ localisation modules of cascaded convolutional neural networks (CNNs). AGs can be easily integrated into standard CNN architectures such as the U-Net model with minimal computational overhead while increasing the model sensitivity and prediction accuracy. The proposed Attention U-Net architecture is evaluated on two large CT abdominal datasets for multi-class image segmentation. Experimental results show that AGs consistently improve the prediction performance of U-Net across different datasets and training sizes while preserving computational efficiency. The code for the proposed architecture is publicly available.
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