Molecular language modeling is an effective approach to generating novel chemical structures. However, these models do not \emph{a priori} encode certain preferences a chemist may desire. We investigate the use of fine-tuning using Direct Preference Optimization to better align generated molecules with chemist preferences. Our findings suggest that this approach is simple, efficient, and highly effective.
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When optimizing problems with uncertain parameter values in a linear objective, decision-focused learning enables end-to-end learning of these values. We are interested in a stochastic scheduling problem, in which processing times are uncertain, which brings uncertain values in the constraints, and thus repair of an initial schedule may be needed. Historical realizations of the stochastic processing times are available. We show how existing decision-focused learning techniques based on stochastic smoothing can be adapted to this scheduling problem. We include an extensive experimental evaluation to investigate in which situations decision-focused learning outperforms the state of the art for such situations: scenario-based stochastic optimization.
Understanding the similarity of the numerous released large language models (LLMs) has many uses, e.g., simplifying model selection, detecting illegal model reuse, and advancing our understanding of what makes LLMs perform well. In this work, we measure the similarity of representations of a set of LLMs with 7B parameters. Our results suggest that some LLMs are substantially different from others. We identify challenges of using representational similarity measures that suggest the need of careful study of similarity scores to avoid false conclusions.
Recent work has shown the utility of developing machine learning models that respect the structure and symmetries of eigenvectors. These works promote sign invariance, since for any eigenvector v the negation -v is also an eigenvector. However, we show that sign invariance is theoretically limited for tasks such as building orthogonally equivariant models and learning node positional encodings for link prediction in graphs. In this work, we demonstrate the benefits of sign equivariance for these tasks. To obtain these benefits, we develop novel sign equivariant neural network architectures. Our models are based on a new analytic characterization of sign equivariant polynomials and thus inherit provable expressiveness properties. Controlled synthetic experiments show that our networks can achieve the theoretically predicted benefits of sign equivariant models. Code is available at //github.com/cptq/Sign-Equivariant-Nets.
The goal of anomaly detection is to identify observations generated by a process that is different from a reference one. An accurate anomaly detector must ensure low false positive and false negative rates. However in the online context such a constraint remains highly challenging due to the usual lack of control of the False Discovery Rate (FDR). In particular the online framework makes it impossible to use classical multiple testing approaches such as the Benjamini-Hochberg (BH) procedure. Our strategy overcomes this difficulty by exploiting a local control of the ``modified FDR'' (mFDR). An important ingredient in this control is the cardinality of the calibration set used for computing empirical $p$-values, which turns out to be an influential parameter. It results a new strategy for tuning this parameter, which yields the desired FDR control over the whole time series. The statistical performance of this strategy is analyzed by theoretical guarantees and its practical behavior is assessed by simulation experiments which support our conclusions.
We consider transferability estimation, the problem of estimating how well deep learning models transfer from a source to a target task. We focus on regression tasks, which received little previous attention, and propose two simple and computationally efficient approaches that estimate transferability based on the negative regularized mean squared error of a linear regression model. We prove novel theoretical results connecting our approaches to the actual transferability of the optimal target models obtained from the transfer learning process. Despite their simplicity, our approaches significantly outperform existing state-of-the-art regression transferability estimators in both accuracy and efficiency. On two large-scale keypoint regression benchmarks, our approaches yield 12% to 36% better results on average while being at least 27% faster than previous state-of-the-art methods.
Innovative foundation models, such as GPT-4 and stable diffusion models, have made a paradigm shift in the realm of artificial intelligence (AI) towards generative AI-based systems. AI and machine learning (AI/ML) algorithms are envisioned to be pervasively incorporated into the future wireless communications systems. In this article, we outline the applications of diffusion models in wireless communication systems, which are a new family of probabilistic generative models that have showcased state-of-the-art performance. The key idea is to decompose data generation process over "denoising" steps, gradually generating samples out of noise. Based on two case studies presented, we show how diffusion models can be employed for the development of resilient AI-native communication systems. Specifically, we propose denoising diffusion probabilistic models (DDPM) for a wireless communication scheme with non-ideal transceivers, where 30% improvement is achieved in terms of bit error rate. In the other example, DDPM is employed at the transmitter to shape the constellation symbols, highlighting a robust out-of-distribution performance.
Contrastive learning models have achieved great success in unsupervised visual representation learning, which maximize the similarities between feature representations of different views of the same image, while minimize the similarities between feature representations of views of different images. In text summarization, the output summary is a shorter form of the input document and they have similar meanings. In this paper, we propose a contrastive learning model for supervised abstractive text summarization, where we view a document, its gold summary and its model generated summaries as different views of the same mean representation and maximize the similarities between them during training. We improve over a strong sequence-to-sequence text generation model (i.e., BART) on three different summarization datasets. Human evaluation also shows that our model achieves better faithfulness ratings compared to its counterpart without contrastive objectives.
Geometric deep learning (GDL), which is based on neural network architectures that incorporate and process symmetry information, has emerged as a recent paradigm in artificial intelligence. GDL bears particular promise in molecular modeling applications, in which various molecular representations with different symmetry properties and levels of abstraction exist. This review provides a structured and harmonized overview of molecular GDL, highlighting its applications in drug discovery, chemical synthesis prediction, and quantum chemistry. Emphasis is placed on the relevance of the learned molecular features and their complementarity to well-established molecular descriptors. This review provides an overview of current challenges and opportunities, and presents a forecast of the future of GDL for molecular sciences.
Data augmentation has been widely used to improve generalizability of machine learning models. However, comparatively little work studies data augmentation for graphs. This is largely due to the complex, non-Euclidean structure of graphs, which limits possible manipulation operations. Augmentation operations commonly used in vision and language have no analogs for graphs. Our work studies graph data augmentation for graph neural networks (GNNs) in the context of improving semi-supervised node-classification. We discuss practical and theoretical motivations, considerations and strategies for graph data augmentation. Our work shows that neural edge predictors can effectively encode class-homophilic structure to promote intra-class edges and demote inter-class edges in given graph structure, and our main contribution introduces the GAug graph data augmentation framework, which leverages these insights to improve performance in GNN-based node classification via edge prediction. Extensive experiments on multiple benchmarks show that augmentation via GAug improves performance across GNN architectures and datasets.
Deep learning has yielded state-of-the-art performance on many natural language processing tasks including named entity recognition (NER). However, this typically requires large amounts of labeled data. In this work, we demonstrate that the amount of labeled training data can be drastically reduced when deep learning is combined with active learning. While active learning is sample-efficient, it can be computationally expensive since it requires iterative retraining. To speed this up, we introduce a lightweight architecture for NER, viz., the CNN-CNN-LSTM model consisting of convolutional character and word encoders and a long short term memory (LSTM) tag decoder. The model achieves nearly state-of-the-art performance on standard datasets for the task while being computationally much more efficient than best performing models. We carry out incremental active learning, during the training process, and are able to nearly match state-of-the-art performance with just 25\% of the original training data.
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