Although large language models (LLMs) often produce impressive outputs, they also fail to reason and be factual. We set out to investigate how these limitations affect the LLM's ability to answer and reason about difficult real-world based questions. We applied the human-aligned GPT-3 (InstructGPT) to answer multiple-choice medical exam questions (USMLE and MedMCQA) and medical research questions (PubMedQA). We investigated Chain-of-thought (think step by step) prompts, grounding (augmenting the prompt with search results) and few-shot (prepending the question with question-answer exemplars). For a subset of the USMLE questions, a medical domain expert reviewed and annotated the model's reasoning. Overall, GPT-3 achieved a substantial improvement in state-of-the-art machine learning performance. We observed that GPT-3 is often knowledgeable and can reason about medical questions. GPT-3, when confronted with a question it cannot answer, will still attempt to answer, often resulting in a biased predictive distribution. LLMs are not on par with human performance but our results suggest the emergence of reasoning patterns that are compatible with medical problem-solving. We speculate that scaling model and data, enhancing prompt alignment and allowing for better contextualization of the completions will be sufficient for LLMs to reach human-level performance on this type of task.
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Query graph construction aims to construct the correct executable SPARQL on the KG to answer natural language questions. Although recent methods have achieved good results using neural network-based query graph ranking, they suffer from three new challenges when handling more complex questions: 1) complicated SPARQL syntax, 2) huge search space, and 3) locally ambiguous query graphs. In this paper, we provide a new solution. As a preparation, we extend the query graph by treating each SPARQL clause as a subgraph consisting of vertices and edges and define a unified graph grammar called AQG to describe the structure of query graphs. Based on these concepts, we propose a novel end-to-end model that performs hierarchical autoregressive decoding to generate query graphs. The high-level decoding generates an AQG as a constraint to prune the search space and reduce the locally ambiguous query graph. The bottom-level decoding accomplishes the query graph construction by selecting appropriate instances from the preprepared candidates to fill the slots in the AQG. The experimental results show that our method greatly improves the SOTA performance on complex KGQA benchmarks. Equipped with pre-trained models, the performance of our method is further improved, achieving SOTA for all three datasets used.
Adversarial examples, inputs designed to induce worst-case behavior in machine learning models, have been extensively studied over the past decade. Yet, our understanding of this phenomenon stems from a rather fragmented pool of knowledge; at present, there are a handful of attacks, each with disparate assumptions in threat models and incomparable definitions of optimality. In this paper, we propose a systematic approach to characterize worst-case (i.e., optimal) adversaries. We first introduce an extensible decomposition of attacks in adversarial machine learning by atomizing attack components into surfaces and travelers. With our decomposition, we enumerate over components to create 576 attacks (568 of which were previously unexplored). Next, we propose the Pareto Ensemble Attack (PEA): a theoretical attack that upper-bounds attack performance. With our new attacks, we measure performance relative to the PEA on: both robust and non-robust models, seven datasets, and three extended lp-based threat models incorporating compute costs, formalizing the Space of Adversarial Strategies. From our evaluation we find that attack performance to be highly contextual: the domain, model robustness, and threat model can have a profound influence on attack efficacy. Our investigation suggests that future studies measuring the security of machine learning should: (1) be contextualized to the domain & threat models, and (2) go beyond the handful of known attacks used today.
Large, pre-trained transformer-based language models such as BERT have drastically changed the Natural Language Processing (NLP) field. We present a survey of recent work that uses these large language models to solve NLP tasks via pre-training then fine-tuning, prompting, or text generation approaches. We also present approaches that use pre-trained language models to generate data for training augmentation or other purposes. We conclude with discussions on limitations and suggested directions for future research.
Large-scale pre-trained models (PTMs) such as BERT and GPT have recently achieved great success and become a milestone in the field of artificial intelligence (AI). Owing to sophisticated pre-training objectives and huge model parameters, large-scale PTMs can effectively capture knowledge from massive labeled and unlabeled data. By storing knowledge into huge parameters and fine-tuning on specific tasks, the rich knowledge implicitly encoded in huge parameters can benefit a variety of downstream tasks, which has been extensively demonstrated via experimental verification and empirical analysis. It is now the consensus of the AI community to adopt PTMs as backbone for downstream tasks rather than learning models from scratch. In this paper, we take a deep look into the history of pre-training, especially its special relation with transfer learning and self-supervised learning, to reveal the crucial position of PTMs in the AI development spectrum. Further, we comprehensively review the latest breakthroughs of PTMs. These breakthroughs are driven by the surge of computational power and the increasing availability of data, towards four important directions: designing effective architectures, utilizing rich contexts, improving computational efficiency, and conducting interpretation and theoretical analysis. Finally, we discuss a series of open problems and research directions of PTMs, and hope our view can inspire and advance the future study of PTMs.
With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interactive nodes connected by edges whose weights can be either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.
Deep models trained in supervised mode have achieved remarkable success on a variety of tasks. When labeled samples are limited, self-supervised learning (SSL) is emerging as a new paradigm for making use of large amounts of unlabeled samples. SSL has achieved promising performance on natural language and image learning tasks. Recently, there is a trend to extend such success to graph data using graph neural networks (GNNs). In this survey, we provide a unified review of different ways of training GNNs using SSL. Specifically, we categorize SSL methods into contrastive and predictive models. In either category, we provide a unified framework for methods as well as how these methods differ in each component under the framework. Our unified treatment of SSL methods for GNNs sheds light on the similarities and differences of various methods, setting the stage for developing new methods and algorithms. We also summarize different SSL settings and the corresponding datasets used in each setting. To facilitate methodological development and empirical comparison, we develop a standardized testbed for SSL in GNNs, including implementations of common baseline methods, datasets, and evaluation metrics.
In multi-turn dialog, utterances do not always take the full form of sentences \cite{Carbonell1983DiscoursePA}, which naturally makes understanding the dialog context more difficult. However, it is essential to fully grasp the dialog context to generate a reasonable response. Hence, in this paper, we propose to improve the response generation performance by examining the model's ability to answer a reading comprehension question, where the question is focused on the omitted information in the dialog. Enlightened by the multi-task learning scheme, we propose a joint framework that unifies these two tasks, sharing the same encoder to extract the common and task-invariant features with different decoders to learn task-specific features. To better fusing information from the question and the dialog history in the encoding part, we propose to augment the Transformer architecture with a memory updater, which is designed to selectively store and update the history dialog information so as to support downstream tasks. For the experiment, we employ human annotators to write and examine a large-scale dialog reading comprehension dataset. Extensive experiments are conducted on this dataset, and the results show that the proposed model brings substantial improvements over several strong baselines on both tasks. In this way, we demonstrate that reasoning can indeed help better response generation and vice versa. We release our large-scale dataset for further research.
A key requirement for the success of supervised deep learning is a large labeled dataset - a condition that is difficult to meet in medical image analysis. Self-supervised learning (SSL) can help in this regard by providing a strategy to pre-train a neural network with unlabeled data, followed by fine-tuning for a downstream task with limited annotations. Contrastive learning, a particular variant of SSL, is a powerful technique for learning image-level representations. In this work, we propose strategies for extending the contrastive learning framework for segmentation of volumetric medical images in the semi-supervised setting with limited annotations, by leveraging domain-specific and problem-specific cues. Specifically, we propose (1) novel contrasting strategies that leverage structural similarity across volumetric medical images (domain-specific cue) and (2) a local version of the contrastive loss to learn distinctive representations of local regions that are useful for per-pixel segmentation (problem-specific cue). We carry out an extensive evaluation on three Magnetic Resonance Imaging (MRI) datasets. In the limited annotation setting, the proposed method yields substantial improvements compared to other self-supervision and semi-supervised learning techniques. When combined with a simple data augmentation technique, the proposed method reaches within 8% of benchmark performance using only two labeled MRI volumes for training, corresponding to only 4% (for ACDC) of the training data used to train the benchmark.
Reasoning with knowledge expressed in natural language and Knowledge Bases (KBs) is a major challenge for Artificial Intelligence, with applications in machine reading, dialogue, and question answering. General neural architectures that jointly learn representations and transformations of text are very data-inefficient, and it is hard to analyse their reasoning process. These issues are addressed by end-to-end differentiable reasoning systems such as Neural Theorem Provers (NTPs), although they can only be used with small-scale symbolic KBs. In this paper we first propose Greedy NTPs (GNTPs), an extension to NTPs addressing their complexity and scalability limitations, thus making them applicable to real-world datasets. This result is achieved by dynamically constructing the computation graph of NTPs and including only the most promising proof paths during inference, thus obtaining orders of magnitude more efficient models. Then, we propose a novel approach for jointly reasoning over KBs and textual mentions, by embedding logic facts and natural language sentences in a shared embedding space. We show that GNTPs perform on par with NTPs at a fraction of their cost while achieving competitive link prediction results on large datasets, providing explanations for predictions, and inducing interpretable models. Source code, datasets, and supplementary material are available online at //github.com/uclnlp/gntp.
Inferring missing links in knowledge graphs (KG) has attracted a lot of attention from the research community. In this paper, we tackle a practical query answering task involving predicting the relation of a given entity pair. We frame this prediction problem as an inference problem in a probabilistic graphical model and aim at resolving it from a variational inference perspective. In order to model the relation between the query entity pair, we assume that there exists an underlying latent variable (paths connecting two nodes) in the KG, which carries the equivalent semantics of their relations. However, due to the intractability of connections in large KGs, we propose to use variation inference to maximize the evidence lower bound. More specifically, our framework (\textsc{Diva}) is composed of three modules, i.e. a posterior approximator, a prior (path finder), and a likelihood (path reasoner). By using variational inference, we are able to incorporate them closely into a unified architecture and jointly optimize them to perform KG reasoning. With active interactions among these sub-modules, \textsc{Diva} is better at handling noise and coping with more complex reasoning scenarios. In order to evaluate our method, we conduct the experiment of the link prediction task on multiple datasets and achieve state-of-the-art performances on both datasets.
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