The time needed to apply a hierarchical clustering algorithm is most often dominated by the number of computations of a pairwise dissimilarity measure. Such a constraint, for larger data sets, puts at a disadvantage the use of all the classical linkage criteria but the single linkage one. However, it is known that the single linkage clustering algorithm is very sensitive to outliers, produces highly skewed dendrograms, and therefore usually does not reflect the true underlying data structure -- unless the clusters are well-separated. To overcome its limitations, we propose a new hierarchical clustering linkage criterion called Genie. Namely, our algorithm links two clusters in such a way that a chosen economic inequity measure (e.g., the Gini- or Bonferroni-index) of the cluster sizes does not drastically increase above a given threshold. The presented benchmarks indicate a high practical usefulness of the introduced method: it most often outperforms the Ward or average linkage in terms of the clustering quality while retaining the single linkage's speed. The Genie algorithm is easily parallelizable and thus may be run on multiple threads to speed up its execution even further. Its memory overhead is small: there is no need to precompute the complete distance matrix to perform the computations in order to obtain a desired clustering. It can be applied on arbitrary spaces equipped with a dissimilarity measure, e.g., on real vectors, DNA or protein sequences, images, rankings, informetric data, etc. A reference implementation of the algorithm has been included in the open source 'genie' package for R. See also //genieclust.gagolewski.com for a new implementation (genieclust) -- available for both R and Python.
相關內容
We consider the problem of finding the matching map between two sets of $d$-dimensional noisy feature-vectors. The distinctive feature of our setting is that we do not assume that all the vectors of the first set have their corresponding vector in the second set. If $n$ and $m$ are the sizes of these two sets, we assume that the matching map that should be recovered is defined on a subset of unknown cardinality $k^*\le \min(n,m)$. We show that, in the high-dimensional setting, if the signal-to-noise ratio is larger than $5(d\log(4nm/\alpha))^{1/4}$, then the true matching map can be recovered with probability $1-\alpha$. Interestingly, this threshold does not depend on $k^*$ and is the same as the one obtained in prior work in the case of $k = \min(n,m)$. The procedure for which the aforementioned property is proved is obtained by a data-driven selection among candidate mappings $\{\hat\pi_k:k\in[\min(n,m)]\}$. Each $\hat\pi_k$ minimizes the sum of squares of distances between two sets of size $k$. The resulting optimization problem can be formulated as a minimum-cost flow problem, and thus solved efficiently. Finally, we report the results of numerical experiments on both synthetic and real-world data that illustrate our theoretical results and provide further insight into the properties of the algorithms studied in this work.
Domain adaptation arises as an important problem in statistical learning theory when the data-generating processes differ between training and test samples, respectively called source and target domains. Recent theoretical advances show that the success of domain adaptation algorithms heavily relies on their ability to minimize the divergence between the probability distributions of the source and target domains. However, minimizing this divergence cannot be done independently of the minimization of other key ingredients such as the source risk or the combined error of the ideal joint hypothesis. The trade-off between these terms is often ensured by algorithmic solutions that remain implicit and not directly reflected by the theoretical guarantees. To get to the bottom of this issue, we propose in this paper a new theoretical framework for domain adaptation through hierarchical optimal transport. This framework provides more explicit generalization bounds and allows us to consider the natural hierarchical organization of samples in both domains into classes or clusters. Additionally, we provide a new divergence measure between the source and target domains called Hierarchical Wasserstein distance that indicates under mild assumptions, which structures have to be aligned to lead to a successful adaptation.
We present a novel sequential Monte Carlo approach to online smoothing of additive functionals in a very general class of path-space models. Hitherto, the solutions proposed in the literature suffer from either long-term numerical instability due to particle-path degeneracy or, in the case that degeneracy is remedied by particle approximation of the so-called backward kernel, high computational demands. In order to balance optimally computational speed against numerical stability, we propose to furnish a (fast) naive particle smoother, propagating recursively a sample of particles and associated smoothing statistics, with an adaptive backward-sampling-based updating rule which allows the number of (costly) backward samples to be kept at a minimum. This yields a new, function-specific additive smoothing algorithm, AdaSmooth, which is computationally fast, numerically stable and easy to implement. The algorithm is provided with rigorous theoretical results guaranteeing its consistency, asymptotic normality and long-term stability as well as numerical results demonstrating empirically the clear superiority of AdaSmooth to existing algorithms.
The problem of monotone submodular maximization has been studied extensively due to its wide range of applications. However, there are cases where one can only access the objective function in a distorted or noisy form because of the uncertain nature or the errors involved in the evaluation. This paper considers the problem of constrained monotone submodular maximization with noisy oracles introduced by [Hassidim et al., 2017]. For a cardinality constraint, we propose an algorithm achieving a near-optimal $\left(1-\frac{1}{e}-O(\varepsilon)\right)$-approximation guarantee (for arbitrary $\varepsilon > 0$) with only a polynomial number of queries to the noisy value oracle, which improves the exponential query complexity of [Singer et al., 2018]. For general matroid constraints, we show the first constant approximation algorithm in the presence of noise. Our main approaches are to design a novel local search framework that can handle the effect of noise and to construct certain smoothing surrogate functions for noise reduction.
Medical term normalization consists in mapping a piece of text to a large number of output classes. Given the small size of the annotated datasets and the extremely long tail distribution of the concepts, it is of utmost importance to develop models that are capable to generalize to scarce or unseen concepts. An important attribute of most target ontologies is their hierarchical structure. In this paper we introduce a simple and effective learning strategy that leverages such information to enhance the generalizability of both discriminative and generative models. The evaluation shows that the proposed strategy produces state-of-the-art performance on seen concepts and consistent improvements on unseen ones, allowing also for efficient zero-shot knowledge transfer across text typologies and datasets.
Discovering new intents is of great significance to establishing Bootstrapped Task-Oriented Dialogue System. Most existing methods either lack the ability to transfer prior knowledge in the known intent data or fall into the dilemma of forgetting prior knowledge in the follow-up. More importantly, these methods do not deeply explore the intrinsic structure of unlabeled data, so they can not seek out the characteristics that make an intent in general. In this paper, starting from the intuition that discovering intents could be beneficial to the identification of the known intents, we propose a probabilistic framework for discovering intents where intent assignments are treated as latent variables. We adopt Expectation Maximization framework for optimization. Specifically, In E-step, we conduct discovering intents and explore the intrinsic structure of unlabeled data by the posterior of intent assignments. In M-step, we alleviate the forgetting of prior knowledge transferred from known intents by optimizing the discrimination of labeled data. Extensive experiments conducted in three challenging real-world datasets demonstrate our method can achieve substantial improvements.
The necessity to deal with uncertain data is a major challenge in decision making. Robust optimization emerged as one of the predominant paradigms to produce solutions that hedge against uncertainty. In order to obtain an even more realistic description of the underlying problem where the decision maker can react to newly disclosed information, multistage models can be used. However, due to their computational difficulty, multistage problems beyond two stages have received less attention and are often only addressed using approximation rather than optimization schemes. Even less attention is paid to the consideration of decision-dependent uncertainty in a multistage setting. We explore multistage robust optimization via quantified linear programs, which are linear programs with ordered variables that are either existentially or universally quantified. Building upon a (mostly) discrete setting where the uncertain parameters -- the universally quantified variables -- are only restricted by their bounds, we present an augmented version that allows stating the discrete uncertainty set via a linear constraint system that also can be affected by decision variables. We present a general search-based solution approach and introduce our solver Yasol that is able to deal with multistage robust linear discrete optimization problems, with final mixed-integer recourse actions and a discrete uncertainty set, which even can be decision-dependent. In doing so, we provide a convenient model-and-run approach, that can serve as baseline for computational experiments in the field of multistage robust optimization, providing optimal solutions for problems with an arbitrary number of decision stages.
Many classification problems consider classes that form a hierarchy. Classifiers that are aware of this hierarchy may be able to make confident predictions at a coarse level despite being uncertain at the fine-grained level. While it is generally possible to vary the granularity of predictions using a threshold at inference time, most contemporary work considers only leaf-node prediction, and almost no prior work has compared methods at multiple operating points. We present an efficient algorithm to produce operating characteristic curves for any method that assigns a score to every class in the hierarchy. Applying this technique to evaluate existing methods reveals that top-down classifiers are dominated by a naive flat softmax classifier across the entire operating range. We further propose two novel loss functions and show that a soft variant of the structured hinge loss is able to significantly outperform the flat baseline. Finally, we investigate the poor accuracy of top-down classifiers and demonstrate that they perform relatively well on unseen classes. Code is available online at //github.com/jvlmdr/hiercls.
As electric vehicle (EV) technologies become mature, EV has been rapidly adopted in modern transportation systems, and is expected to provide future autonomous mobility-on-demand (AMoD) service with economic and societal benefits. However, EVs require frequent recharges due to their limited and unpredictable cruising ranges, and they have to be managed efficiently given the dynamic charging process. It is urgent and challenging to investigate a computationally efficient algorithm that provide EV AMoD system performance guarantees under model uncertainties, instead of using heuristic demand or charging models. To accomplish this goal, this work designs a data-driven distributionally robust optimization approach for vehicle supply-demand ratio and charging station utilization balancing, while minimizing the worst-case expected cost considering both passenger mobility demand uncertainties and EV supply uncertainties. We then derive an equivalent computationally tractable form for solving the distributionally robust problem in a computationally efficient way under ellipsoid uncertainty sets constructed from data. Based on E-taxi system data of Shenzhen city, we show that the average total balancing cost is reduced by 14.49%, the average unfairness of supply-demand ratio and utilization is reduced by 15.78% and 34.51% respectively with the distributionally robust vehicle balancing method, compared with solutions which do not consider model uncertainties.
Clustering is one of the most fundamental and wide-spread techniques in exploratory data analysis. Yet, the basic approach to clustering has not really changed: a practitioner hand-picks a task-specific clustering loss to optimize and fit the given data to reveal the underlying cluster structure. Some types of losses---such as k-means, or its non-linear version: kernelized k-means (centroid based), and DBSCAN (density based)---are popular choices due to their good empirical performance on a range of applications. Although every so often the clustering output using these standard losses fails to reveal the underlying structure, and the practitioner has to custom-design their own variation. In this work we take an intrinsically different approach to clustering: rather than fitting a dataset to a specific clustering loss, we train a recurrent model that learns how to cluster. The model uses as training pairs examples of datasets (as input) and its corresponding cluster identities (as output). By providing multiple types of training datasets as inputs, our model has the ability to generalize well on unseen datasets (new clustering tasks). Our experiments reveal that by training on simple synthetically generated datasets or on existing real datasets, we can achieve better clustering performance on unseen real-world datasets when compared with standard benchmark clustering techniques. Our meta clustering model works well even for small datasets where the usual deep learning models tend to perform worse.
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