Electronic Health Records (EHRs) contain a wealth of patient data; however, the sparsity of EHRs data often presents significant challenges for predictive modeling. Conventional imputation methods inadequately distinguish between real and imputed data, leading to potential inaccuracies of patient representations. To address these issues, we introduce PRISM, a framework that indirectly imputes data by leveraging prototype representations of similar patients, thus ensuring compact representations that preserve patient information. PRISM also includes a feature confidence learner module, which evaluates the reliability of each feature considering missing statuses. Additionally, PRISM introduces a new patient similarity metric that accounts for feature confidence, avoiding overreliance on imprecise imputed values. Our extensive experiments on the MIMIC-III, MIMIC-IV, PhysioNet Challenge 2012, eICU datasets demonstrate PRISM's superior performance in predicting in-hospital mortality and 30-day readmission tasks, showcasing its effectiveness in handling EHR data sparsity. For the sake of reproducibility and further research, we have made the code publicly available at //github.com/yhzhu99/PRISM.
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We present a comprehensive study of answer quality evaluation in Retrieval-Augmented Generation (RAG) applications using vRAG-Eval, a novel grading system that is designed to assess correctness, completeness, and honesty. We further map the grading of quality aspects aforementioned into a binary score, indicating an accept or reject decision, mirroring the intuitive "thumbs-up" or "thumbs-down" gesture commonly used in chat applications. This approach suits factual business settings where a clear decision opinion is essential. Our assessment applies vRAG-Eval to two Large Language Models (LLMs), evaluating the quality of answers generated by a vanilla RAG application. We compare these evaluations with human expert judgments and find a substantial alignment between GPT-4's assessments and those of human experts, reaching 83% agreement on accept or reject decisions. This study highlights the potential of LLMs as reliable evaluators in closed-domain, closed-ended settings, particularly when human evaluations require significant resources.
Database Management Systems (DBMSs) are vital components in modern data-driven systems. Their complexity often leads to logic bugs, which are implementation errors within the DBMSs that can lead to incorrect query results, data exposure, unauthorized access, etc., without necessarily causing visible system failures. Existing detection employs two strategies: rule-based bug detection and coverage-guided fuzzing. In general, rule specification itself is challenging; as a result, rule-based detection is limited to specific and simple rules. Coverage-guided fuzzing blindly explores code paths or blocks, many of which are unlikely to contain logic bugs; therefore, this strategy is cost-ineffective. In this paper, we design SQLaser, a SQL-clause-guided fuzzer for detecting logic bugs in DBMSs. Through a comprehensive examination of most existing logic bugs across four distinct DBMSs, excluding those causing system crashes, we have identified 35 logic bug patterns. These patterns manifest as certain SQL clause combinations that commonly result in logic bugs, and behind these clause combinations are a sequence of functions. We therefore model logic bug patterns as error-prone function chains (ie, sequences of functions). We further develop a directed fuzzer with a new path-to-path distance-calculation mechanism for effectively testing these chains and discovering additional logic bugs. This mechanism enables SQLaser to swiftly navigate to target sites and uncover potential bugs emerging from these paths. Our evaluation, conducted on SQLite, MySQL, PostgreSQL, and TiDB, demonstrates that SQLaser significantly accelerates bug discovery compared to other fuzzing approaches, reducing detection time by approximately 60%.
We propose Waymo Open Motion Dataset-Reasoning (WOMD-Reasoning), a language annotation dataset built on WOMD, with a focus on describing and reasoning interactions and intentions in driving scenarios. Previous language datasets primarily captured interactions caused by close distances. However, interactions induced by traffic rules and human intentions, which can occur over long distances, are yet sufficiently covered, despite being very common and more challenging for prediction or planning models to understand. Therefore, our WOMD-Reasoning focuses extensively on these interactions, providing a total of 409k Q&As for varying types of interactions. Additionally, WOMD-Reasoning presents by far the largest Q&A dataset on real-world driving scenarios, with around 3 million Q&As covering various topics of autonomous driving from map descriptions, motion status descriptions, to narratives and analyses of agents' interactions, behaviors, and intentions. This extensive textual information enables fine-tuning driving-related Large Language Models (LLMs) for a wide range of applications like scene description, prediction, planning, etc. By incorporating interaction and intention language from WOMD-Reasoning, we see significant enhancements in the performance of the state-of-the-art trajectory prediction model, Multipath++, with improvements of 10.14% in $MR_6$ and 6.90% in $minFDE_6$, proving the effectiveness of WOMD-Reasoning. We hope WOMD-Reasoning would empower LLMs in driving to offer better interaction understanding and behavioral reasoning. The dataset is available on //waymo.com/open/download .
In the Emotion Recognition in Conversation task, recent investigations have utilized attention mechanisms exploring relationships among utterances from intra- and inter-speakers for modeling emotional interaction between them. However, attributes such as speaker personality traits remain unexplored and present challenges in terms of their applicability to other tasks or compatibility with diverse model architectures. Therefore, this work introduces a novel framework named BiosERC, which investigates speaker characteristics in a conversation. By employing Large Language Models (LLMs), we extract the "biographical information" of the speaker within a conversation as supplementary knowledge injected into the model to classify emotional labels for each utterance. Our proposed method achieved state-of-the-art (SOTA) results on three famous benchmark datasets: IEMOCAP, MELD, and EmoryNLP, demonstrating the effectiveness and generalization of our model and showcasing its potential for adaptation to various conversation analysis tasks. Our source code is available at //github.com/yingjie7/BiosERC.
Direct Preference Optimisation (DPO) is effective at significantly improving the performance of large language models (LLMs) on downstream tasks such as reasoning, summarisation, and alignment. Using pairs of preferred and dispreferred data, DPO models the relative probability of picking one response over another. In this work, first we show theoretically that the standard DPO loss can lead to a reduction of the model's likelihood of the preferred examples, as long as the relative probability between the preferred and dispreferred classes increases. We then show empirically that this phenomenon occurs when fine-tuning LLMs on common datasets, especially datasets in which the edit distance between pairs of completions is low. Using these insights, we design DPO-Positive (DPOP), a new loss function and training procedure which avoids this failure mode. Surprisingly, we find that DPOP outperforms DPO and other fine-tuning procedures across a wide variety of datasets and downstream tasks, including datasets with high edit distances between completions. Furthermore, we find that the DPOP-tuned model outperforms the DPO-tuned model (all else equal) on benchmarks independent of the fine-tuning data, such as MT-Bench. Finally, using DPOP, we create and open-source Smaug-34B and Smaug-72B, with the latter becoming the first open-source LLM to surpass an average accuracy of 80% on the HuggingFace Open LLM Leaderboard.
Despite the substantial success of Information Retrieval (IR) in various NLP tasks, most IR systems predominantly handle queries and corpora in natural language, neglecting the domain of code retrieval. Code retrieval is critically important yet remains under-explored, with existing methods and benchmarks inadequately representing the diversity of code in various domains and tasks. Addressing this gap, we present \textbf{\name} (\textbf{Co}de \textbf{I}nformation \textbf{R}etrieval Benchmark), a robust and comprehensive benchmark specifically designed to assess code retrieval capabilities. \name comprises \textbf{ten} meticulously curated code datasets, spanning \textbf{eight} distinctive retrieval tasks across \textbf{seven} diverse domains. We first discuss the construction of \name and its diverse dataset composition. Further, we evaluate nine widely used retrieval models using \name, uncovering significant difficulties in performing code retrieval tasks even with state-of-the-art systems. To facilitate easy adoption and integration within existing research workflows, \name has been developed as a user-friendly Python framework, readily installable via pip. It shares same data schema as other popular benchmarks like MTEB and BEIR, enabling seamless cross-benchmark evaluations. Through \name, we aim to invigorate research in the code retrieval domain, providing a versatile benchmarking tool that encourages further development and exploration of code retrieval systems\footnote{\url{ //github.com/CoIR-team/coir}}.
Large Language Models (LLMs) have significantly impacted numerous domains, including Software Engineering (SE). Many recent publications have explored LLMs applied to various SE tasks and applications. Nevertheless, a comprehensive understanding of the application, effects, and possible limitations of LLMs on SE is still in its early stages. To bridge this gap, we conducted a systematic literature review on the intersection of LLMs and SE, with a particular focus on understanding how LLMs can be exploited in SE to optimize processes and outcomes. We collect and analyze a total of 229 research papers from 2017 to 2023 to answer four key research questions (RQs). In RQ1, we categorize and provide a comparative analysis of different LLMs that have been employed in SE tasks, characterising their distinctive features and uses. In RQ2, we analyse the methods used in data collection, preprocessing, and application highlighting the role of robust, well-curated datasets for successful LLM for SE implementation. RQ3 investigates the strategies employed to optimize and evaluate the performance of LLMs in SE, as well as the common techniques related to prompt optimization. Finally, RQ4 examines the specific SE tasks where LLMs have shown success to date, illustrating their practical contributions to the field. From the answers to these RQs, we discuss the current state-of-the-art and trends, identifying gaps in existing research, and flagging promising areas for future study.
Graph neural networks (GNNs) have demonstrated a significant boost in prediction performance on graph data. At the same time, the predictions made by these models are often hard to interpret. In that regard, many efforts have been made to explain the prediction mechanisms of these models from perspectives such as GNNExplainer, XGNN and PGExplainer. Although such works present systematic frameworks to interpret GNNs, a holistic review for explainable GNNs is unavailable. In this survey, we present a comprehensive review of explainability techniques developed for GNNs. We focus on explainable graph neural networks and categorize them based on the use of explainable methods. We further provide the common performance metrics for GNNs explanations and point out several future research directions.
The problem of Multiple Object Tracking (MOT) consists in following the trajectory of different objects in a sequence, usually a video. In recent years, with the rise of Deep Learning, the algorithms that provide a solution to this problem have benefited from the representational power of deep models. This paper provides a comprehensive survey on works that employ Deep Learning models to solve the task of MOT on single-camera videos. Four main steps in MOT algorithms are identified, and an in-depth review of how Deep Learning was employed in each one of these stages is presented. A complete experimental comparison of the presented works on the three MOTChallenge datasets is also provided, identifying a number of similarities among the top-performing methods and presenting some possible future research directions.
Visual Question Answering (VQA) models have struggled with counting objects in natural images so far. We identify a fundamental problem due to soft attention in these models as a cause. To circumvent this problem, we propose a neural network component that allows robust counting from object proposals. Experiments on a toy task show the effectiveness of this component and we obtain state-of-the-art accuracy on the number category of the VQA v2 dataset without negatively affecting other categories, even outperforming ensemble models with our single model. On a difficult balanced pair metric, the component gives a substantial improvement in counting over a strong baseline by 6.6%.
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