Consensus clustering (or clustering aggregation) inputs $k$ partitions of a given ground set $V$, and seeks to create a single partition that minimizes disagreement with all input partitions. State-of-the-art algorithms for consensus clustering are based on correlation clustering methods like the popular Pivot algorithm. Unfortunately these methods have not proved to be practical for consensus clustering instances where either $k$ or $V$ gets large. In this paper we provide practical run time improvements for correlation clustering solvers when $V$ is large. We reduce the time complexity of Pivot from $O(|V|^2 k)$ to $O(|V| k)$, and its space complexity from $O(|V|^2)$ to $O(|V| k)$ -- a significant savings since in practice $k$ is much less than $|V|$. We also analyze a sampling method for these algorithms when $k$ is large, bridging the gap between running Pivot on the full set of input partitions (an expected 1.57-approximation) and choosing a single input partition at random (an expected 2-approximation). We show experimentally that algorithms like Pivot do obtain quality clustering results in practice even on small samples of input partitions.
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We provide a framework to prove convergence rates for discretizations of kinetic Langevin dynamics for $M$-$\nabla$Lipschitz $m$-log-concave densities. Our approach provides convergence rates of $\mathcal{O}(m/M)$, with explicit stepsize restrictions, which are of the same order as the stability threshold for Gaussian targets and are valid for a large interval of the friction parameter. We apply this methodology to various integration methods which are popular in the molecular dynamics and machine learning communities. Finally we introduce the property ``$\gamma$-limit convergent" (GLC) to characterise underdamped Langevin schemes that converge to overdamped dynamics in the high friction limit and which have stepsize restrictions that are independent of the friction parameter; we show that this property is not generic by exhibiting methods from both the class and its complement.
Voxel-based segmentation volumes often store a large number of labels and voxels, and the resulting amount of data can make storage, transfer, and interactive visualization difficult. We present a lossless compression technique which addresses these challenges. It processes individual small bricks of a segmentation volume and compactly encodes the labelled regions and their boundaries by an iterative refinement scheme. The result for each brick is a list of labels, and a sequence of operations to reconstruct the brick which is further compressed using rANS-entropy coding. As the relative frequencies of operations are very similar across bricks, the entropy coding can use global frequency tables for an entire data set which enables efficient and effective parallel (de)compression. Our technique achieves high throughput (up to gigabytes per second both for compression and decompression) and strong compression ratios of about 1% to 3% of the original data set size while being applicable to GPU-based rendering. We evaluate our method for various data sets from different fields and demonstrate GPU-based volume visualization with on-the-fly decompression, level-of-detail rendering (with optional on-demand streaming of detail coefficients to the GPU), and a caching strategy for decompressed bricks for further performance improvement.
Given two strings $A[1..n]$ and $B[1..m]$, and a set of operations allowed to edit the strings, the edit distance between $A$ and $B$ is the minimum number of operations required to transform $A$ into $B$. Sequentially, a standard Dynamic Programming (DP) algorithm solves edit distance with $\Theta(nm)$ cost. In many real-world applications, the strings to be compared are similar and have small edit distances. To achieve highly practical implementations, we focus on output-sensitive parallel edit-distance algorithms, i.e., to achieve asymptotically better cost bounds than the standard $\Theta(nm)$ algorithm when the edit distance is small. We study four algorithms in the paper, including three algorithms based on Breadth-First Search (BFS) and one algorithm based on Divide-and-Conquer (DaC). Our BFS-based solution is based on the Landau-Vishkin algorithm. We implement three different data structures for the longest common prefix (LCP) queries needed in the algorithm: the classic solution using parallel suffix array, and two hash-based solutions proposed in this paper. Our DaC-based solution is inspired by the output-insensitive solution proposed by Apostolico et al., and we propose a non-trivial adaption to make it output-sensitive. All our algorithms have good theoretical guarantees, and they achieve different tradeoffs between work (total number of operations), span (longest dependence chain in the computation), and space. We test and compare our algorithms on both synthetic data and real-world data. Our BFS-based algorithms outperform the existing parallel edit-distance implementation in ParlayLib in all test cases. By comparing our algorithms, we also provide a better understanding of the choice of algorithms for different input patterns. We believe that our paper is the first systematic study in the theory and practice of parallel edit distance.
In answer set programming (ASP), answer sets capture solutions to search problems of interest and thus the efficient computation of answer sets is of utmost importance. One viable implementation strategy is provided by translation-based ASP where logic programs are translated into other KR formalisms such as Boolean satisfiability (SAT), SAT modulo theories (SMT), and mixed-integer programming (MIP). Consequently, existing solvers can be harnessed for the computation of answer sets. Many of the existing translations rely on program completion and level rankings to capture the minimality of answer sets and default negation properly. In this work, we take level ranking constraints into reconsideration, aiming at their generalizations to cover aggregate-based extensions of ASP in more systematic way. By applying a number of program transformations, ranking constraints can be rewritten in a general form that preserves the structure of monotone and convex aggregates and thus offers a uniform basis for their incorporation into translation-based ASP. The results open up new possibilities for the implementation of translators and solver pipelines in practice.
In the $t$-online-erasure model in property testing, an adversary is allowed to erase $t$ values of a queried function for each query the tester makes. This model was recently formulated by Kalemaj, Raskhodnikova andVarma, who showed that the properties of linearity of functions as well as quadraticity can be tested in$O_t(1)$ many queries: $O(\log (t))$ for linearity and $2^{2^{O(t)}}$ for quadraticity. They asked whether the more general property of low-degreeness can be tested in the online erasure model, whether better testers exist for quadraticity, and if similar results hold when ``erasures'' are replaced with ``corruptions''. We show that, in the $t$-online-erasure model, for a prime power $q$, given query access to a function $f: \mathbb{F}_q^n \xrightarrow[]{} \mathbb{F}_q$, one can distinguish in $\mathrm{poly}(\log^{d+q}(t)/\delta)$ queries between the case that $f$ is degree at most $d$, and the case that $f$ is $\delta$-far from any degree $d$ function (with respect to the fractional hamming distance). This answers the aforementioned questions and brings the query complexity to nearly match the query complexity of low-degree testing in the classical property testing model. Our results are based on the observation that the property of low-degreeness admits a large and versatile family of query efficient testers. Our testers operates by querying a uniformly random, sufficiently large set of points in a large enough affine subspace, and finding a tester for low-degreeness that only utilizes queries from that set of points. We believe that this tester may find other applications to algorithms in the online-erasure model or other related models, and may be of independent interest.
The goal of the trace reconstruction problem is to recover a string $x\in\{0,1\}^n$ given many independent {\em traces} of $x$, where a trace is a subsequence obtained from deleting bits of $x$ independently with some given probability $p\in [0,1).$ A recent result of Chase (STOC 2021) shows how $x$ can be determined (in exponential time) from $\exp(\widetilde{O}(n^{1/5}))$ traces. This is the state-of-the-art result on the sample complexity of trace reconstruction. In this paper we consider two kinds of algorithms for the trace reconstruction problem. Our first, and technically more involved, result shows that any $k$-mer-based algorithm for trace reconstruction must use $\exp(\Omega(n^{1/5}))$ traces, under the assumption that the estimator requires $poly(2^k, 1/\varepsilon)$ traces, thus establishing the optimality of this number of traces. The analysis of this result also shows that the analysis technique used by Chase (STOC 2021) is essentially tight, and hence new techniques are needed in order to improve the worst-case upper bound. Our second, simple, result considers the performance of the Maximum Likelihood Estimator (MLE), which specifically picks the source string that has the maximum likelihood to generate the samples (traces). We show that the MLE algorithm uses a nearly optimal number of traces, \ie, up to a factor of $n$ in the number of samples needed for an optimal algorithm, and show that this factor of $n$ loss may be necessary under general ``model estimation'' settings.
Lifetime models with a non-monotone hazard rate $\hspace{0.12cm}$ function have a wide range of applications in engineering and lifetime data analysis. There are different bathtub shaped failure rate models that are available in reliability literature. Kavya and Manoharan (2021) introduced a new transformation called KM-transformation which was found to be more useful in reliability and lifetime data analysis. Power generalization technique would be the best approach to deal with a system whose components are connected in series, in which the distribution of the component is KM-transformation of any lifetime model. In this article, we introduce a new lifetime model, Power Generalized KM-Transformation (PGKM) for Non-Monotone Failure Rate Distribution, which shows monotone and non-monotone behavior for the hazard rate function for different choices of values of parameters. We derive the moments, moment generating function, characteristic function, quantiles, entropy etc of the proposed distribution. Distributions of minimum and maximum are obtained. Estimation of parameters of the distribution is performed via maximum likelihood method. A simulation study is performed to validate the maximum likelihood estimator (MLE). Analysis of three sets of real data are given.
The chronological order of user-item interactions can reveal time-evolving and sequential user behaviors in many recommender systems. The items that users will interact with may depend on the items accessed in the past. However, the substantial increase of users and items makes sequential recommender systems still face non-trivial challenges: (1) the hardness of modeling the short-term user interests; (2) the difficulty of capturing the long-term user interests; (3) the effective modeling of item co-occurrence patterns. To tackle these challenges, we propose a memory augmented graph neural network (MA-GNN) to capture both the long- and short-term user interests. Specifically, we apply a graph neural network to model the item contextual information within a short-term period and utilize a shared memory network to capture the long-range dependencies between items. In addition to the modeling of user interests, we employ a bilinear function to capture the co-occurrence patterns of related items. We extensively evaluate our model on five real-world datasets, comparing with several state-of-the-art methods and using a variety of performance metrics. The experimental results demonstrate the effectiveness of our model for the task of Top-K sequential recommendation.
Providing model-generated explanations in recommender systems is important to user experience. State-of-the-art recommendation algorithms -- especially the collaborative filtering (CF) based approaches with shallow or deep models -- usually work with various unstructured information sources for recommendation, such as textual reviews, visual images, and various implicit or explicit feedbacks. Though structured knowledge bases were considered in content-based approaches, they have been largely ignored recently due to the availability of vast amount of data and the learning power of many complex models. However, structured knowledge bases exhibit unique advantages in personalized recommendation systems. When the explicit knowledge about users and items is considered for recommendation, the system could provide highly customized recommendations based on users' historical behaviors and the knowledge is helpful for providing informed explanations regarding the recommended items. In this work, we propose to reason over knowledge base embeddings for explainable recommendation. Specifically, we propose a knowledge base representation learning framework to embed heterogeneous entities for recommendation, and based on the embedded knowledge base, a soft matching algorithm is proposed to generate personalized explanations for the recommended items. Experimental results on real-world e-commerce datasets verified the superior recommendation performance and the explainability power of our approach compared with state-of-the-art baselines.
Traditional methods for link prediction can be categorized into three main types: graph structure feature-based, latent feature-based, and explicit feature-based. Graph structure feature methods leverage some handcrafted node proximity scores, e.g., common neighbors, to estimate the likelihood of links. Latent feature methods rely on factorizing networks' matrix representations to learn an embedding for each node. Explicit feature methods train a machine learning model on two nodes' explicit attributes. Each of the three types of methods has its unique merits. In this paper, we propose SEAL (learning from Subgraphs, Embeddings, and Attributes for Link prediction), a new framework for link prediction which combines the power of all the three types into a single graph neural network (GNN). GNN is a new type of neural network which directly accepts graphs as input and outputs their labels. In SEAL, the input to the GNN is a local subgraph around each target link. We prove theoretically that our local subgraphs also reserve a great deal of high-order graph structure features related to link existence. Another key feature is that our GNN can naturally incorporate latent features and explicit features. It is achieved by concatenating node embeddings (latent features) and node attributes (explicit features) in the node information matrix for each subgraph, thus combining the three types of features to enhance GNN learning. Through extensive experiments, SEAL shows unprecedentedly strong performance against a wide range of baseline methods, including various link prediction heuristics and network embedding methods.
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