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In-utero fetal MRI is emerging as an important tool in the diagnosis and analysis of the developing human brain. Automatic segmentation of the developing fetal brain is a vital step in the quantitative analysis of prenatal neurodevelopment both in the research and clinical context. However, manual segmentation of cerebral structures is time-consuming and prone to error and inter-observer variability. Therefore, we organized the Fetal Tissue Annotation (FeTA) Challenge in 2021 in order to encourage the development of automatic segmentation algorithms on an international level. The challenge utilized FeTA Dataset, an open dataset of fetal brain MRI reconstructions segmented into seven different tissues (external cerebrospinal fluid, grey matter, white matter, ventricles, cerebellum, brainstem, deep grey matter). 20 international teams participated in this challenge, submitting a total of 21 algorithms for evaluation. In this paper, we provide a detailed analysis of the results from both a technical and clinical perspective. All participants relied on deep learning methods, mainly U-Nets, with some variability present in the network architecture, optimization, and image pre- and post-processing. The majority of teams used existing medical imaging deep learning frameworks. The main differences between the submissions were the fine tuning done during training, and the specific pre- and post-processing steps performed. The challenge results showed that almost all submissions performed similarly. Four of the top five teams used ensemble learning methods. However, one team's algorithm performed significantly superior to the other submissions, and consisted of an asymmetrical U-Net network architecture. This paper provides a first of its kind benchmark for future automatic multi-tissue segmentation algorithms for the developing human brain in utero.

Most methods for automated full-bore rock core image analysis (description, colour, properties distribution, etc.) are based on separate core column analyses. The core is usually imaged in a box because of the significant amount of time taken to get an image for each core column. The work presents an innovative method and algorithm for core columns extraction from core boxes. The conditions for core boxes imaging may differ tremendously. Such differences are disastrous for machine learning algorithms which need a large dataset describing all possible data variations. Still, such images have some standard features - a box and core. Thus, we can emulate different environments with a unique augmentation described in this work. It is called template-like augmentation (TLA). The method is described and tested on various environments, and results are compared on an algorithm trained on both 'traditional' data and a mix of traditional and TLA data. The algorithm trained with TLA data provides better metrics and can detect core on most new images, unlike the algorithm trained on data without TLA. The algorithm for core column extraction implemented in an automated core description system speeds up the core box processing by a factor of 20.

Training a model with access to human explanations can improve data efficiency and model performance on in- and out-of-domain data. Adding to these empirical findings, similarity with the process of human learning makes learning from explanations a promising way to establish a fruitful human-machine interaction. Several methods have been proposed for improving natural language processing (NLP) models with human explanations, that rely on different explanation types and mechanism for integrating these explanations into the learning process. These methods are rarely compared with each other, making it hard for practitioners to choose the best combination of explanation type and integration mechanism for a specific use-case. In this paper, we give an overview of different methods for learning from human explanations, and discuss different factors that can inform the decision of which method to choose for a specific use-case.

The Mixture-of-Experts (MoE) technique can scale up the model size of Transformers with an affordable computational overhead. We point out that existing learning-to-route MoE methods suffer from the routing fluctuation issue, i.e., the target expert of the same input may change along with training, but only one expert will be activated for the input during inference. The routing fluctuation tends to harm sample efficiency because the same input updates different experts but only one is finally used. In this paper, we propose StableMoE with two training stages to address the routing fluctuation problem. In the first training stage, we learn a balanced and cohesive routing strategy and distill it into a lightweight router decoupled from the backbone model. In the second training stage, we utilize the distilled router to determine the token-to-expert assignment and freeze it for a stable routing strategy. We validate our method on language modeling and multilingual machine translation. The results show that StableMoE outperforms existing MoE methods in terms of both convergence speed and performance.

In clinical settings, where acquisition conditions and patient populations change over time, continual learning is key for ensuring the safe use of deep neural networks. Yet most existing work focuses on convolutional architectures and image classification. Instead, radiologists prefer to work with segmentation models that outline specific regions-of-interest, for which Transformer-based architectures are gaining traction. The self-attention mechanism of Transformers could potentially mitigate catastrophic forgetting, opening the way for more robust medical image segmentation. In this work, we explore how recently-proposed Transformer mechanisms for semantic segmentation behave in sequential learning scenarios, and analyse how best to adapt continual learning strategies for this setting. Our evaluation on hippocampus segmentation shows that Transformer mechanisms mitigate catastrophic forgetting for medical image segmentation compared to purely convolutional architectures, and demonstrates that regularising ViT modules should be done with caution.

Modern neural network training relies heavily on data augmentation for improved generalization. After the initial success of label-preserving augmentations, there has been a recent surge of interest in label-perturbing approaches, which combine features and labels across training samples to smooth the learned decision surface. In this paper, we propose a new augmentation method that leverages the first and second moments extracted and re-injected by feature normalization. We replace the moments of the learned features of one training image by those of another, and also interpolate the target labels. As our approach is fast, operates entirely in feature space, and mixes different signals than prior methods, one can effectively combine it with existing augmentation methods. We demonstrate its efficacy across benchmark data sets in computer vision, speech, and natural language processing, where it consistently improves the generalization performance of highly competitive baseline networks.

We present a simple self-training method that achieves 87.4% top-1 accuracy on ImageNet, which is 1.0% better than the state-of-the-art model that requires 3.5B weakly labeled Instagram images. On robustness test sets, it improves ImageNet-A top-1 accuracy from 16.6% to 74.2%, reduces ImageNet-C mean corruption error from 45.7 to 31.2, and reduces ImageNet-P mean flip rate from 27.8 to 16.1. To achieve this result, we first train an EfficientNet model on labeled ImageNet images and use it as a teacher to generate pseudo labels on 300M unlabeled images. We then train a larger EfficientNet as a student model on the combination of labeled and pseudo labeled images. We iterate this process by putting back the student as the teacher. During the generation of the pseudo labels, the teacher is not noised so that the pseudo labels are as good as possible. But during the learning of the student, we inject noise such as data augmentation, dropout, stochastic depth to the student so that the noised student is forced to learn harder from the pseudo labels.

Intent classification and slot filling are two essential tasks for natural language understanding. They often suffer from small-scale human-labeled training data, resulting in poor generalization capability, especially for rare words. Recently a new language representation model, BERT (Bidirectional Encoder Representations from Transformers), facilitates pre-training deep bidirectional representations on large-scale unlabeled corpora, and has created state-of-the-art models for a wide variety of natural language processing tasks after simple fine-tuning. However, there has not been much effort on exploring BERT for natural language understanding. In this work, we propose a joint intent classification and slot filling model based on BERT. Experimental results demonstrate that our proposed model achieves significant improvement on intent classification accuracy, slot filling F1, and sentence-level semantic frame accuracy on several public benchmark datasets, compared to the attention-based recurrent neural network models and slot-gated models.

Deep neural network architectures have traditionally been designed and explored with human expertise in a long-lasting trial-and-error process. This process requires huge amount of time, expertise, and resources. To address this tedious problem, we propose a novel algorithm to optimally find hyperparameters of a deep network architecture automatically. We specifically focus on designing neural architectures for medical image segmentation task. Our proposed method is based on a policy gradient reinforcement learning for which the reward function is assigned a segmentation evaluation utility (i.e., dice index). We show the efficacy of the proposed method with its low computational cost in comparison with the state-of-the-art medical image segmentation networks. We also present a new architecture design, a densely connected encoder-decoder CNN, as a strong baseline architecture to apply the proposed hyperparameter search algorithm. We apply the proposed algorithm to each layer of the baseline architectures. As an application, we train the proposed system on cine cardiac MR images from Automated Cardiac Diagnosis Challenge (ACDC) MICCAI 2017. Starting from a baseline segmentation architecture, the resulting network architecture obtains the state-of-the-art results in accuracy without performing any trial-and-error based architecture design approaches or close supervision of the hyperparameters changes.

In this paper, we focus on three problems in deep learning based medical image segmentation. Firstly, U-net, as a popular model for medical image segmentation, is difficult to train when convolutional layers increase even though a deeper network usually has a better generalization ability because of more learnable parameters. Secondly, the exponential ReLU (ELU), as an alternative of ReLU, is not much different from ReLU when the network of interest gets deep. Thirdly, the Dice loss, as one of the pervasive loss functions for medical image segmentation, is not effective when the prediction is close to ground truth and will cause oscillation during training. To address the aforementioned three problems, we propose and validate a deeper network that can fit medical image datasets that are usually small in the sample size. Meanwhile, we propose a new loss function to accelerate the learning process and a combination of different activation functions to improve the network performance. Our experimental results suggest that our network is comparable or superior to state-of-the-art methods.