Extending computational harmonic analysis tools from the classical setting of regular lattices to the more general setting of graphs and networks is very important and much research has been done recently. The Generalized Haar-Walsh Transform (GHWT) developed by Irion and Saito (2014) is a multiscale transform for signals on graphs, which is a generalization of the classical Haar and Walsh-Hadamard Transforms. We propose the extended Generalized Haar-Walsh Transform (eGHWT), which is a generalization of the adapted time-frequency tilings of Thiele and Villemoes (1996). The eGHWT examines not only the efficiency of graph-domain partitions but also that of "sequency-domain" partitions simultaneously. Consequently, the eGHWT and its associated best-basis selection algorithm for graph signals significantly improve the performance of the previous GHWT with the similar computational cost, $O(N \log N)$, where $N$ is the number of nodes of an input graph. While the GHWT best-basis algorithm seeks the most suitable orthonormal basis for a given task among more than $(1.5)^N$ possible orthonormal bases in $\mathbb{R}^N$, the eGHWT best-basis algorithm can find a better one by searching through more than $0.618\cdot(1.84)^N$ possible orthonormal bases in $\mathbb{R}^N$. This article describes the details of the eGHWT best-basis algorithm and demonstrates its superiority using several examples including genuine graph signals as well as conventional digital images viewed as graph signals. Furthermore, we also show how the eGHWT can be extended to 2D signals and matrix-form data by viewing them as a tensor product of graphs generated from their columns and rows and demonstrate its effectiveness on applications such as image approximation.
In this paper we present an algebraic dimension-oblivious two-level domain decomposition solver for discretizations of elliptic partial differential equations. The proposed parallel solver is based on a space-filling curve partitioning approach that is applicable to any discretization, i.e. it directly operates on the assembled matrix equations. Moreover, it allows for the effective use of arbitrary processor numbers independent of the dimension of the underlying partial differential equation while maintaining optimal convergence behavior. This is the core property required to attain a sparse grid based combination method with extreme scalability which can utilize exascale parallel systems efficiently. Moreover, this approach provides a basis for the development of a fault-tolerant solver for the numerical treatment of high-dimensional problems. To achieve the required data redundancy we are therefore concerned with large overlaps of our domain decomposition which we construct via space-filling curves. In this paper, we propose our space-filling curve based domain decomposition solver and present its convergence properties and scaling behavior. The results of numerical experiments clearly show that our approach provides optimal convergence and scaling behavior in arbitrary dimension utilizing arbitrary processor numbers.
Compositional data, which is data consisting of fractions or probabilities, is common in many fields including ecology, economics, physical science and political science. If these data would otherwise be normally distributed, their spread can be conveniently represented by a multivariate normal distribution truncated to the non-negative space under a unit simplex. Here this distribution is called the simplex-truncated multivariate normal distribution. For calculations on truncated distributions, it is often useful to obtain rapid estimates of their integral, mean and covariance; these quantities characterising the truncated distribution will generally possess different values to the corresponding non-truncated distribution. In this paper, three different approaches that can estimate the integral, mean and covariance of any simplex-truncated multivariate normal distribution are described and compared. These three approaches are (1) naive rejection sampling, (2) a method described by Gessner et al. that unifies subset simulation and the Holmes-Diaconis-Ross algorithm with an analytical version of elliptical slice sampling, and (3) a semi-analytical method that expresses the integral, mean and covariance in terms of integrals of hyperrectangularly-truncated multivariate normal distributions, the latter of which are readily computed in modern mathematical and statistical packages. Strong agreement is demonstrated between all three approaches, but the most computationally efficient approach depends strongly both on implementation details and the dimension of the simplex-truncated multivariate normal distribution. For computations in low-dimensional distributions, the semi-analytical method is fast and thus should be considered. As the dimension increases, the Gessner et al. method becomes the only practically efficient approach of the methods tested here.
We consider the question of adaptive data analysis within the framework of convex optimization. We ask how many samples are needed in order to compute $\epsilon$-accurate estimates of $O(1/\epsilon^2)$ gradients queried by gradient descent, and we provide two intermediate answers to this question. First, we show that for a general analyst (not necessarily gradient descent) $\Omega(1/\epsilon^3)$ samples are required. This rules out the possibility of a foolproof mechanism. Our construction builds upon a new lower bound (that may be of interest of its own right) for an analyst that may ask several non adaptive questions in a batch of fixed and known $T$ rounds of adaptivity and requires a fraction of true discoveries. We show that for such an analyst $\Omega (\sqrt{T}/\epsilon^2)$ samples are necessary. Second, we show that, under certain assumptions on the oracle, in an interaction with gradient descent $\tilde \Omega(1/\epsilon^{2.5})$ samples are necessary. Our assumptions are that the oracle has only \emph{first order access} and is \emph{post-hoc generalizing}. First order access means that it can only compute the gradients of the sampled function at points queried by the algorithm. Our assumption of \emph{post-hoc generalization} follows from existing lower bounds for statistical queries. More generally then, we provide a generic reduction from the standard setting of statistical queries to the problem of estimating gradients queried by gradient descent. These results are in contrast with classical bounds that show that with $O(1/\epsilon^2)$ samples one can optimize the population risk to accuracy of $O(\epsilon)$ but, as it turns out, with spurious gradients.
Adverse events are a serious issue in drug development and many prediction methods using machine learning have been developed. The random split cross-validation is the de facto standard for model building and evaluation in machine learning, but care should be taken in adverse event prediction because this approach tends to be overoptimistic compared with the real-world situation. The time split, which uses the time axis, is considered suitable for real-world prediction. However, the differences in model performance obtained using the time and random splits are not fully understood. To understand the differences, we compared the model performance between the time and random splits using eight types of compound information as input, eight adverse events as targets, and six machine learning algorithms. The random split showed higher area under the curve values than did the time split for six of eight targets. The chemical spaces of the training and test datasets of the time split were similar, suggesting that the concept of applicability domain is insufficient to explain the differences derived from the splitting. The area under the curve differences were smaller for the protein interaction than for the other datasets. Subsequent detailed analyses suggested the danger of confounding in the use of knowledge-based information in the time split. These findings indicate the importance of understanding the differences between the time and random splits in adverse event prediction and suggest that appropriate use of the splitting strategies and interpretation of results are necessary for the real-world prediction of adverse events.
We investigate the feature compression of high-dimensional ridge regression using the optimal subsampling technique. Specifically, based on the basic framework of random sampling algorithm on feature for ridge regression and the A-optimal design criterion, we first obtain a set of optimal subsampling probabilities. Considering that the obtained probabilities are uneconomical, we then propose the nearly optimal ones. With these probabilities, a two step iterative algorithm is established which has lower computational cost and higher accuracy. We provide theoretical analysis and numerical experiments to support the proposed methods. Numerical results demonstrate the decent performance of our methods.
Existing inferential methods for small area data involve a trade-off between maintaining area-level frequentist coverage rates and improving inferential precision via the incorporation of indirect information. In this article, we propose a method to obtain an area-level prediction region for a future observation which mitigates this trade-off. The proposed method takes a conformal prediction approach in which the conformity measure is the posterior predictive density of a working model that incorporates indirect information. The resulting prediction region has guaranteed frequentist coverage regardless of the working model, and, if the working model assumptions are accurate, the region has minimum expected volume compared to other regions with the same coverage rate. When constructed under a normal working model, we prove such a prediction region is an interval and construct an efficient algorithm to obtain the exact interval. We illustrate the performance of our method through simulation studies and an application to EPA radon survey data.
In this article we suggest two discretization methods based on isogeometric analysis (IGA) for planar linear elasticity. On the one hand, we apply the well-known ansatz of weakly imposed symmetry for the stress tensor and obtain a well-posed mixed formulation. Such modified mixed problems have been already studied by different authors. But we concentrate on the exploitation of IGA results to handle also curved boundary geometries. On the other hand, we consider the more complicated situation of strong symmetry, i.e. we discretize the mixed weak form determined by the so-called Hellinger-Reissner variational principle. We show the existence of suitable approximate fields leading to an inf-sup stable saddle-point problem. For both discretization approaches we prove convergence statements and in case of weak symmetry we illustrate the approximation behavior by means of several numerical experiments.
In large scale dynamic wireless networks, the amount of overhead caused by channel estimation (CE) is becoming one of the main performance bottlenecks. This is due to the large number users whose channels should be estimated, the user mobility, and the rapid channel change caused by the usage of the high-frequency spectrum (e.g. millimeter wave). In this work, we propose a new hybrid channel estimation/prediction (CEP) scheme to reduce overhead in time-division duplex (TDD) wireless cell-free massive multiple-input-multiple-output (mMIMO) systems. The scheme proposes sending a pilot signal from each user only once in a given number (window) of coherence intervals (CIs). Then minimum mean-square error (MMSE) estimation is used to estimate the channel of this CI, while a deep neural network (DNN) is used to predict the channels of the remaining CIs in the window. The DNN exploits the temporal correlation between the consecutive CIs and the received pilot signals to improve the channel prediction accuracy. By doing so, CE overhead is reduced by at least 50 percent at the expense of negligible CE error for practical user mobility settings. Consequently, the proposed CEP scheme improves the spectral efficiency compared to the conventional MMSE CE approach, especially when the number of users is large, which is demonstrated numerically.
Holonomic functions play an essential role in Computer Algebra since they allow the application of many symbolic algorithms. Among all algorithmic attempts to find formulas for power series, the holonomic property remains the most important requirement to be satisfied by the function under consideration. The targeted functions mainly summarize that of meromorphic functions. However, expressions like $\tan(z)$, $z/(\exp(z)-1)$, $\sec(z)$, etc., particularly, reciprocals, quotients and compositions of holonomic functions, are generally not holonomic. Therefore their power series are inaccessible by the holonomic framework. From the mathematical dictionaries, one can observe that most of the known closed-form formulas of non-holonomic power series involve another sequence whose evaluation depends on some finite summations. In the case of $\tan(z)$ and $\sec(z)$ the corresponding sequences are the Bernoulli and Euler numbers, respectively. Thus providing a symbolic approach that yields complete representations when linear summations for power series coefficients of non-holonomic functions appear, might be seen as a step forward towards the representation of non-holonomic power series. By adapting the method of ansatz with undetermined coefficients, we build an algorithm that computes least-order quadratic differential equations with polynomial coefficients for a large class of non-holonomic functions. A differential equation resulting from this procedure is converted into a recurrence equation by applying the Cauchy product formula and rewriting powers into polynomials and derivatives into shifts. Finally, using enough initial values we are able to give normal form representations to characterize several non-holonomic power series and prove non-trivial identities. We discuss this algorithm and its implementation for Maple 2022.
Decomposition-based evolutionary algorithms have become fairly popular for many-objective optimization in recent years. However, the existing decomposition methods still are quite sensitive to the various shapes of frontiers of many-objective optimization problems (MaOPs). On the one hand, the cone decomposition methods such as the penalty-based boundary intersection (PBI) are incapable of acquiring uniform frontiers for MaOPs with very convex frontiers. On the other hand, the parallel reference lines of the parallel decomposition methods including the normal boundary intersection (NBI) might result in poor diversity because of under-sampling near the boundaries for MaOPs with concave frontiers. In this paper, a collaborative decomposition method is first proposed to integrate the advantages of parallel decomposition and cone decomposition to overcome their respective disadvantages. This method inherits the NBI-style Tchebycheff function as a convergence measure to heighten the convergence and uniformity of distribution of the PBI method. Moreover, this method also adaptively tunes the extent of rotating an NBI reference line towards a PBI reference line for every subproblem to enhance the diversity of distribution of the NBI method. Furthermore, a collaborative decomposition-based evolutionary algorithm (CoDEA) is presented for many-objective optimization. A collaborative decomposition-based environmental selection mechanism is primarily designed in CoDEA to rank all the individuals associated with the same PBI reference line in the boundary layer and pick out the best ranks. CoDEA is compared with several popular algorithms on 85 benchmark test instances. The experimental results show that CoDEA achieves high competitiveness benefiting from the collaborative decomposition maintaining a good balance among the convergence, uniformity, and diversity of distribution.