Boolean nested canalizing functions (NCFs) have important applications in molecular regulatory networks, engineering and computer science. In this paper, we study their certificate complexity. For both Boolean values $b\in\{0,1\}$, we obtain a formula for $b$-certificate complexity and consequently, we develop a direct proof of the certificate complexity formula of an NCF. Symmetry is another interesting property of Boolean functions and we significantly simplify the proofs of some recent theorems about partial symmetry of NCFs. We also describe the algebraic normal form of $s$-symmetric NCFs. We obtain the general formula of the cardinality of the set of $n$-variable $s$-symmetric Boolean NCFs for $s=1,\dots,n$. In particular, we enumerate the strongly asymmetric Boolean NCFs.
The median of a graph $G$ with weighted vertices is the set of all vertices $x$ minimizing the sum of weighted distances from $x$ to the vertices of $G$. For any integer $p\ge 2$, we characterize the graphs in which, with respect to any non-negative weights, median sets always induce connected subgraphs in the $p$th power $G^p$ of $G$. This extends some characterizations of graphs with connected medians (case $p=1$) provided by Bandelt and Chepoi (2002). The characteristic conditions can be tested in polynomial time for any $p$. We also show that several important classes of graphs in metric graph theory, including bridged graphs (and thus chordal graphs), graphs with convex balls, bucolic graphs, and bipartite absolute retracts, have $G^2$-connected medians. Extending the result of Bandelt and Chepoi that basis graphs of matroids are graphs with connected medians, we characterize the isometric subgraphs of Johnson graphs and of halved-cubes with connected medians.
We introduce a numerical technique for controlling the location and stability properties of Hopf bifurcations in dynamical systems. The algorithm consists of solving an optimization problem constrained by an extended system of nonlinear partial differential equations that characterizes Hopf bifurcation points. The flexibility and robustness of the method allows us to advance or delay a Hopf bifurcation to a target value of the bifurcation parameter, as well as controlling the oscillation frequency with respect to a parameter of the system or the shape of the domain on which solutions are defined. Numerical applications are presented in systems arising from biology and fluid dynamics, such as the FitzHugh-Nagumo model, Ginzburg-Landau equation, Rayleigh-B\'enard convection problem, and Navier-Stokes equations, where the control of the location and oscillation frequency of periodic solutions is of high interest.
Consider solving large sparse range symmetric singular linear systems $A{\bf x} = {\bf b}$ which arise, for instance, in the discretization of convection diffusion equations with periodic boundary conditions, and partial differential equations for electromagnetic fields using the edge-based finite element method. In theory, the Generalized Minimal Residual (GMRES) method converges to the least squares solution for inconsistent systems if the coefficient matrix $A$ is range symmetric, i.e. ${\rm R}(A)={ {\rm R}(A^{\rm T} })$, where ${\rm R}(A)$ is the range space of $A$. However, in practice, GMRES may not converge due to numerical instability. In order to improve the convergence, we propose using the pseudo-inverse for the solution of the severely ill-conditioned Hessenberg systems in GMRES. Numerical experiments on semi-definite inconsistent systems indicate that the method is efficient and robust. Finally, we further improve the convergence of the method, by reorthogonalizing the Modified Gram-Schmidt procedure.
We consider a cooperative X-channel with $\sf K$ transmitters (TXs) and $\sf K$ receivers (Rxs) where Txs and Rxs are gathered into groups of size $\sf r$ respectively. Txs belonging to the same group cooperate to jointly transmit a message to each of the $\sf K- \sf r$ Rxs in all other groups, and each Rx individually decodes all its intended messages. By introducing a new interference alignment (IA) scheme, we prove that when $\sf K/\sf r$ is an integer the sum Degrees of Freedom (SDoF) of this channel is lower bounded by $2\sf r$ if $\sf K/\sf r \in \{2,3\}$ and by $\frac{\sf K(\sf K-\sf r)-\sf r}{2\sf K-3\sf r}$ if $\sf K/\sf r \geq 4$. We also prove that the SDoF is upper bounded by $\frac{\sf K(\sf K-\sf r)}{2\sf K-3\sf r}$. The proposed IA scheme finds application in a wireless distributed MapReduce framework, where it improves the normalized data delivery time (NDT) compared to the state of the art.
We consider the problem of finding nearly optimal solutions of optimization problems with random objective functions. Two concrete problems we consider are (a) optimizing the Hamiltonian of a spherical or Ising $p$-spin glass model, and (b) finding a large independent set in a sparse Erd\H{o}s-R\'{e}nyi graph. The following families of algorithms are considered: (a) low-degree polynomials of the input; (b) low-depth Boolean circuits; (c) the Langevin dynamics algorithm. We show that these families of algorithms fail to produce nearly optimal solutions with high probability. For the case of Boolean circuits, our results improve the state-of-the-art bounds known in circuit complexity theory (although we consider the search problem as opposed to the decision problem). Our proof uses the fact that these models are known to exhibit a variant of the overlap gap property (OGP) of near-optimal solutions. Specifically, for both models, every two solutions whose objectives are above a certain threshold are either close or far from each other. The crux of our proof is that the classes of algorithms we consider exhibit a form of stability. We show by an interpolation argument that stable algorithms cannot overcome the OGP barrier. The stability of Langevin dynamics is an immediate consequence of the well-posedness of stochastic differential equations. The stability of low-degree polynomials and Boolean circuits is established using tools from Gaussian and Boolean analysis -- namely hypercontractivity and total influence, as well as a novel lower bound for random walks avoiding certain subsets. In the case of Boolean circuits, the result also makes use of Linal-Mansour-Nisan's classical theorem. Our techniques apply more broadly to low influence functions and may apply more generally.
The $P_1$--nonconforming quadrilateral finite element space with periodic boundary condition is investigated. The dimension and basis for the space are characterized with the concept of minimally essential discrete boundary conditions. We show that the situation is totally different based on the parity of the number of discretization on coordinates. Based on the analysis on the space, we propose several numerical schemes for elliptic problems with periodic boundary condition. Some of these numerical schemes are related with solving a linear equation consisting of a non-invertible matrix. By courtesy of the Drazin inverse, the existence of corresponding numerical solutions is guaranteed. The theoretical relation between the numerical solutions is derived, and it is confirmed by numerical results. Finally, the extension to the three dimensional is provided.
We introduce simple quadrature rules for the family of nonparametric nonconforming quadrilateral element with four degrees of freedom. Our quadrature rules are motivated by the work of Meng {\it et al.} \cite{meng2018new}. First, we introduce a family of MVP (Mean Value Property)-preserving four DOFs nonconforming elements on the intermediate reference domain introduced by Meng {\it et al.}. Then we design two--points and three--points quadrature rules on the intermediate reference domain. Under the assumption on equal quadrature weights, the deviation from the quadrilateral center of the Gauss points for the two points and three points rules assumes the same quadratic polynomials with constant terms modified. Thus, the two--points rule and three--points rule are constructed at one stroke. The quadrature rules are asymptotically optimal as the mesh size is sufficiently small. Several numerical experiments are carried out, which show efficiency and convergence properties of the new quadrature rules.
Graph signals are signals with an irregular structure that can be described by a graph. Graph neural networks (GNNs) are information processing architectures tailored to these graph signals and made of stacked layers that compose graph convolutional filters with nonlinear activation functions. Graph convolutions endow GNNs with invariance to permutations of the graph nodes' labels. In this paper, we consider the design of trainable nonlinear activation functions that take into consideration the structure of the graph. This is accomplished by using graph median filters and graph max filters, which mimic linear graph convolutions and are shown to retain the permutation invariance of GNNs. We also discuss modifications to the backpropagation algorithm necessary to train local activation functions. The advantages of localized activation function architectures are demonstrated in four numerical experiments: source localization on synthetic graphs, authorship attribution of 19th century novels, movie recommender systems and scientific article classification. In all cases, localized activation functions are shown to improve model capacity.
In this work, we consider the distributed optimization of non-smooth convex functions using a network of computing units. We investigate this problem under two regularity assumptions: (1) the Lipschitz continuity of the global objective function, and (2) the Lipschitz continuity of local individual functions. Under the local regularity assumption, we provide the first optimal first-order decentralized algorithm called multi-step primal-dual (MSPD) and its corresponding optimal convergence rate. A notable aspect of this result is that, for non-smooth functions, while the dominant term of the error is in $O(1/\sqrt{t})$, the structure of the communication network only impacts a second-order term in $O(1/t)$, where $t$ is time. In other words, the error due to limits in communication resources decreases at a fast rate even in the case of non-strongly-convex objective functions. Under the global regularity assumption, we provide a simple yet efficient algorithm called distributed randomized smoothing (DRS) based on a local smoothing of the objective function, and show that DRS is within a $d^{1/4}$ multiplicative factor of the optimal convergence rate, where $d$ is the underlying dimension.
Discrete random structures are important tools in Bayesian nonparametrics and the resulting models have proven effective in density estimation, clustering, topic modeling and prediction, among others. In this paper, we consider nested processes and study the dependence structures they induce. Dependence ranges between homogeneity, corresponding to full exchangeability, and maximum heterogeneity, corresponding to (unconditional) independence across samples. The popular nested Dirichlet process is shown to degenerate to the fully exchangeable case when there are ties across samples at the observed or latent level. To overcome this drawback, inherent to nesting general discrete random measures, we introduce a novel class of latent nested processes. These are obtained by adding common and group-specific completely random measures and, then, normalising to yield dependent random probability measures. We provide results on the partition distributions induced by latent nested processes, and develop an Markov Chain Monte Carlo sampler for Bayesian inferences. A test for distributional homogeneity across groups is obtained as a by product. The results and their inferential implications are showcased on synthetic and real data.