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Retrosynthesis involves determining a sequence of reactions to synthesize complex molecules from simpler precursors. As this poses a challenge in organic chemistry, machine learning has offered solutions, particularly for predicting possible reaction substrates for a given target molecule. These solutions mainly fall into template-based and template-free categories. The former is efficient but relies on a vast set of predefined reaction patterns, while the latter, though more flexible, can be computationally intensive and less interpretable. To address these issues, we introduce METRO (Molecule-Edit Templates for RetrOsynthesis), a machine-learning model that predicts reactions using minimal templates - simplified reaction patterns capturing only essential molecular changes - reducing computational overhead and achieving state-of-the-art results on standard benchmarks.

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The training of neural networks requires tedious and often manual tuning of the network architecture. We propose a systematic method to insert new layers during the training process, which eliminates the need to choose a fixed network size before training. Our technique borrows techniques from constrained optimization and is based on first-order sensitivity information of the objective with respect to the virtual parameters that additional layers, if inserted, would offer. We consider fully connected feedforward networks with selected activation functions as well as residual neural networks. In numerical experiments, the proposed sensitivity-based layer insertion technique exhibits improved training decay, compared to not inserting the layer. Furthermore, the computational effort is reduced in comparison to inserting the layer from the beginning. The code is available at \url{//github.com/LeonieKreis/layer_insertion_sensitivity_based}.

We propose a diarization system, that estimates "who spoke when" based on spatial information, to be used as a front-end of a meeting transcription system running on the signals gathered from an acoustic sensor network (ASN). Although the spatial distribution of the microphones is advantageous, exploiting the spatial diversity for diarization and signal enhancement is challenging, because the microphones' positions are typically unknown, and the recorded signals are initially unsynchronized in general. Here, we approach these issues by first blindly synchronizing the signals and then estimating time differences of arrival (TDOAs). The TDOA information is exploited to estimate the speakers' activity, even in the presence of multiple speakers being simultaneously active. This speaker activity information serves as a guide for a spatial mixture model, on which basis the individual speaker's signals are extracted via beamforming. Finally, the extracted signals are forwarded to a speech recognizer. Additionally, a novel initialization scheme for spatial mixture models based on the TDOA estimates is proposed. Experiments conducted on real recordings from the LibriWASN data set have shown that our proposed system is advantageous compared to a system using a spatial mixture model, which does not make use of external diarization information.

We propose CatVersion, an inversion-based method that learns the personalized concept through a handful of examples. Subsequently, users can utilize text prompts to generate images that embody the personalized concept, thereby achieving text-to-image personalization. In contrast to existing approaches that emphasize word embedding learning or parameter fine-tuning for the diffusion model, which potentially causes concept dilution or overfitting, our method concatenates embeddings on the feature-dense space of the text encoder in the diffusion model to learn the gap between the personalized concept and its base class, aiming to maximize the preservation of prior knowledge in diffusion models while restoring the personalized concepts. To this end, we first dissect the text encoder's integration in the image generation process to identify the feature-dense space of the encoder. Afterward, we concatenate embeddings on the Keys and Values in this space to learn the gap between the personalized concept and its base class. In this way, the concatenated embeddings ultimately manifest as a residual on the original attention output. To more accurately and unbiasedly quantify the results of personalized image generation, we improve the CLIP image alignment score based on masks. Qualitatively and quantitatively, CatVersion helps to restore personalization concepts more faithfully and enables more robust editing.

Contrastive loss has been increasingly used in learning representations from multiple modalities. In the limit, the nature of the contrastive loss encourages modalities to exactly match each other in the latent space. Yet it remains an open question how the modality alignment affects the downstream task performance. In this paper, based on an information-theoretic argument, we first prove that exact modality alignment is sub-optimal in general for downstream prediction tasks. Hence we advocate that the key of better performance lies in meaningful latent modality structures instead of perfect modality alignment. To this end, we propose three general approaches to construct latent modality structures. Specifically, we design 1) a deep feature separation loss for intra-modality regularization; 2) a Brownian-bridge loss for inter-modality regularization; and 3) a geometric consistency loss for both intra- and inter-modality regularization. Extensive experiments are conducted on two popular multi-modal representation learning frameworks: the CLIP-based two-tower model and the ALBEF-based fusion model. We test our model on a variety of tasks including zero/few-shot image classification, image-text retrieval, visual question answering, visual reasoning, and visual entailment. Our method achieves consistent improvements over existing methods, demonstrating the effectiveness and generalizability of our proposed approach on latent modality structure regularization.

Despite the recent progress in deep learning, most approaches still go for a silo-like solution, focusing on learning each task in isolation: training a separate neural network for each individual task. Many real-world problems, however, call for a multi-modal approach and, therefore, for multi-tasking models. Multi-task learning (MTL) aims to leverage useful information across tasks to improve the generalization capability of a model. This thesis is concerned with multi-task learning in the context of computer vision. First, we review existing approaches for MTL. Next, we propose several methods that tackle important aspects of multi-task learning. The proposed methods are evaluated on various benchmarks. The results show several advances in the state-of-the-art of multi-task learning. Finally, we discuss several possibilities for future work.

With the advances of data-driven machine learning research, a wide variety of prediction problems have been tackled. It has become critical to explore how machine learning and specifically deep learning methods can be exploited to analyse healthcare data. A major limitation of existing methods has been the focus on grid-like data; however, the structure of physiological recordings are often irregular and unordered which makes it difficult to conceptualise them as a matrix. As such, graph neural networks have attracted significant attention by exploiting implicit information that resides in a biological system, with interactive nodes connected by edges whose weights can be either temporal associations or anatomical junctions. In this survey, we thoroughly review the different types of graph architectures and their applications in healthcare. We provide an overview of these methods in a systematic manner, organized by their domain of application including functional connectivity, anatomical structure and electrical-based analysis. We also outline the limitations of existing techniques and discuss potential directions for future research.

Knowledge graphs are important resources for many artificial intelligence tasks but often suffer from incompleteness. In this work, we propose to use pre-trained language models for knowledge graph completion. We treat triples in knowledge graphs as textual sequences and propose a novel framework named Knowledge Graph Bidirectional Encoder Representations from Transformer (KG-BERT) to model these triples. Our method takes entity and relation descriptions of a triple as input and computes scoring function of the triple with the KG-BERT language model. Experimental results on multiple benchmark knowledge graphs show that our method can achieve state-of-the-art performance in triple classification, link prediction and relation prediction tasks.

Multi-relation Question Answering is a challenging task, due to the requirement of elaborated analysis on questions and reasoning over multiple fact triples in knowledge base. In this paper, we present a novel model called Interpretable Reasoning Network that employs an interpretable, hop-by-hop reasoning process for question answering. The model dynamically decides which part of an input question should be analyzed at each hop; predicts a relation that corresponds to the current parsed results; utilizes the predicted relation to update the question representation and the state of the reasoning process; and then drives the next-hop reasoning. Experiments show that our model yields state-of-the-art results on two datasets. More interestingly, the model can offer traceable and observable intermediate predictions for reasoning analysis and failure diagnosis, thereby allowing manual manipulation in predicting the final answer.

Many natural language processing tasks solely rely on sparse dependencies between a few tokens in a sentence. Soft attention mechanisms show promising performance in modeling local/global dependencies by soft probabilities between every two tokens, but they are not effective and efficient when applied to long sentences. By contrast, hard attention mechanisms directly select a subset of tokens but are difficult and inefficient to train due to their combinatorial nature. In this paper, we integrate both soft and hard attention into one context fusion model, "reinforced self-attention (ReSA)", for the mutual benefit of each other. In ReSA, a hard attention trims a sequence for a soft self-attention to process, while the soft attention feeds reward signals back to facilitate the training of the hard one. For this purpose, we develop a novel hard attention called "reinforced sequence sampling (RSS)", selecting tokens in parallel and trained via policy gradient. Using two RSS modules, ReSA efficiently extracts the sparse dependencies between each pair of selected tokens. We finally propose an RNN/CNN-free sentence-encoding model, "reinforced self-attention network (ReSAN)", solely based on ReSA. It achieves state-of-the-art performance on both Stanford Natural Language Inference (SNLI) and Sentences Involving Compositional Knowledge (SICK) datasets.

While existing machine learning models have achieved great success for sentiment classification, they typically do not explicitly capture sentiment-oriented word interaction, which can lead to poor results for fine-grained analysis at the snippet level (a phrase or sentence). Factorization Machine provides a possible approach to learning element-wise interaction for recommender systems, but they are not directly applicable to our task due to the inability to model contexts and word sequences. In this work, we develop two Position-aware Factorization Machines which consider word interaction, context and position information. Such information is jointly encoded in a set of sentiment-oriented word interaction vectors. Compared to traditional word embeddings, SWI vectors explicitly capture sentiment-oriented word interaction and simplify the parameter learning. Experimental results show that while they have comparable performance with state-of-the-art methods for document-level classification, they benefit the snippet/sentence-level sentiment analysis.

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