Accurate identification and quantification of unruptured intracranial aneurysms (UIAs) is crucial for the risk assessment and treatment of this cerebrovascular disorder. Current 2D manual assessment on 3D magnetic resonance angiography (MRA) is suboptimal and time-consuming. In addition, one major issue in medical image segmentation is the need for large well-annotated data, which can be expensive to obtain. Techniques that mitigate this requirement, such as weakly supervised learning with coarse labels are highly desirable. In the paper, we propose FocalSegNet, a novel 3D focal modulation UNet, to detect an aneurysm and offer an initial, coarse segmentation of it from time-of-flight MRA image patches, which is further refined with a dense conditional random field (CRF) post-processing layer to produce a final segmentation map. We trained and evaluated our model on a public dataset, and in terms of UIA detection, our model showed a low false-positive rate of 0.21 and a high sensitivity of 0.80. For voxel-wise aneurysm segmentation, we achieved a Dice score of 0.68 and a 95% Hausdorff distance of ~0.95 mm, demonstrating its strong performance. We evaluated our algorithms against the state-of-the-art 3D Residual-UNet and Swin-UNETR, and illustrated the superior performance of our proposed FocalSegNet, highlighting the advantages of employing focal modulation for this task.
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Supervised machine learning models and public surveillance data has been employed for infectious disease forecasting in many settings. These models leverage various data sources capturing drivers of disease spread, such as climate conditions or human behavior. However, few models have incorporated the organizational structure of different geographic locations for forecasting. Traveling waves of seasonal outbreaks have been reported for dengue, influenza, and other infectious diseases, and many of the drivers of infectious disease dynamics may be shared across different cities, either due to their geographic or socioeconomic proximity. In this study, we developed a machine learning model to predict case counts of four infectious diseases across Brazilian cities one week ahead by incorporating information from related cities. We compared selecting related cities using both geographic distance and GDP per capita. Incorporating information from geographically proximate cities improved predictive performance for two of the four diseases, specifically COVID-19 and Zika. We also discuss the impact on forecasts in the presence of anomalous contagion patterns and the limitations of the proposed methodology.
We generalize McDiarmid's inequality for functions with bounded differences on a high probability set, using an extension argument. Those functions concentrate around their conditional expectations. We further extend the results to concentration in general metric spaces.
Efficiently enumerating all the extreme points of a polytope identified by a system of linear inequalities is a well-known challenge issue. We consider a special case and present an algorithm that enumerates all the extreme points of a bisubmodular polyhedron in $\mathcal{O}(n^4|V|)$ time and $\mathcal{O}(n^2)$ space complexity, where $n$ is the dimension of underlying space and $V$ is the set of outputs. We use the reverse search and signed poset linked to extreme points to avoid the redundant search. Our algorithm is a generalization of enumerating all the extreme points of a base polyhedron which comprises some combinatorial enumeration problems.
Single-particle entangled states (SPES) can offer a more secure way of encoding and processing quantum information than their multi-particle counterparts. The SPES generated via a 2D alternate quantum-walk setup from initially separable states can be either 3-way or 2-way entangled. This letter shows that the generated genuine three-way and nonlocal two-way SPES can be used as cryptographic keys to securely encode two distinct messages simultaneously. We detail the message encryption-decryption steps and show the resilience of the 3-way and 2-way SPES-based cryptographic protocols against eavesdropper attacks like intercept-and-resend and man-in-the-middle. We also detail how these protocols can be experimentally realized using single photons, with the three degrees of freedom being OAM, path, and polarization. These have unparalleled security for quantum communication tasks. The ability to simultaneously encode two distinct messages using the generated SPES showcases the versatility and efficiency of the proposed cryptographic protocol. This capability could significantly improve the throughput of quantum communication systems.
Overdamped Langevin dynamics are reversible stochastic differential equations which are commonly used to sample probability measures in high-dimensional spaces, such as the ones appearing in computational statistical physics and Bayesian inference. By varying the diffusion coefficient, there are in fact infinitely many overdamped Langevin dynamics which are reversible with respect to the target probability measure at hand. This suggests to optimize the diffusion coefficient in order to increase the convergence rate of the dynamics, as measured by the spectral gap of the generator associated with the stochastic differential equation. We analytically study this problem here, obtaining in particular necessary conditions on the optimal diffusion coefficient. We also derive an explicit expression of the optimal diffusion in some appropriate homogenized limit. Numerical results, both relying on discretizations of the spectral gap problem and Monte Carlo simulations of the stochastic dynamics, demonstrate the increased quality of the sampling arising from an appropriate choice of the diffusion coefficient.
When estimating causal effects from observational studies, researchers often need to adjust for many covariates to deconfound the non-causal relationship between exposure and outcome, among which many covariates are discrete. The behavior of commonly used estimators in the presence of many discrete covariates is not well understood since their properties are often analyzed under structural assumptions including sparsity and smoothness, which do not apply in discrete settings. In this work, we study the estimation of causal effects in a model where the covariates required for confounding adjustment are discrete but high-dimensional, meaning the number of categories $d$ is comparable with or even larger than sample size $n$. Specifically, we show the mean squared error of commonly used regression, weighting and doubly robust estimators is bounded by $\frac{d^2}{n^2}+\frac{1}{n}$. We then prove the minimax lower bound for the average treatment effect is of order $\frac{d^2}{n^2 \log^2 n}+\frac{1}{n}$, which characterizes the fundamental difficulty of causal effect estimation in the high-dimensional discrete setting, and shows the estimators mentioned above are rate-optimal up to log-factors. We further consider additional structures that can be exploited, namely effect homogeneity and prior knowledge of the covariate distribution, and propose new estimators that enjoy faster convergence rates of order $\frac{d}{n^2} + \frac{1}{n}$, which achieve consistency in a broader regime. The results are illustrated empirically via simulation studies.
In this article, an efficient numerical method for computing finite-horizon controllability Gramians in Cholesky-factored form is proposed. The method is applicable to general dense matrices of moderate size and produces a Cholesky factor of the Gramian without computing the full product. In contrast to other methods applicable to this task, the proposed method is a generalization of the scaling-and-squaring approach for approximating the matrix exponential. It exploits a similar doubling formula for the Gramian, and thereby keeps the required computational effort modest. Most importantly, a rigorous backward error analysis is provided, which guarantees that the approximation is accurate to the round-off error level in double precision. This accuracy is illustrated in practice on a large number of standard test examples. The method has been implemented in the Julia package FiniteHorizonGramians.jl, which is available online under the MIT license. Code for reproducing the experimental results is included in this package, as well as code for determining the optimal method parameters. The analysis can thus easily be adapted to a different finite-precision arithmetic.
Reachability and other path-based measures on temporal graphs can be used to understand spread of infection, information, and people in modelled systems. Due to delays and errors in reporting, temporal graphs derived from data are unlikely to perfectly reflect reality, especially with respect to the precise times at which edges appear. To reflect this uncertainty, we consider a model in which some number $\zeta$ of edge appearances may have their timestamps perturbed by $\pm\delta$ for some $\delta$. Within this model, we investigate temporal reachability and consider the problem of determining the maximum number of vertices any vertex can reach under these perturbations. We show that this problem is intractable in general but is efficiently solvable when $\zeta$ is sufficiently large. We also give algorithms which solve this problem in several restricted settings. We complement this with some contrasting results concerning the complexity of related temporal eccentricity problems under perturbation.
This paper develops an in-depth treatment concerning the problem of approximating the Gaussian smoothing and Gaussian derivative computations in scale-space theory for application on discrete data. With close connections to previous axiomatic treatments of continuous and discrete scale-space theory, we consider three main ways discretizing these scale-space operations in terms of explicit discrete convolutions, based on either (i) sampling the Gaussian kernels and the Gaussian derivative kernels, (ii) locally integrating the Gaussian kernels and the Gaussian derivative kernels over each pixel support region and (iii) basing the scale-space analysis on the discrete analogue of the Gaussian kernel, and then computing derivative approximations by applying small-support central difference operators to the spatially smoothed image data. We study the properties of these three main discretization methods both theoretically and experimentally, and characterize their performance by quantitative measures, including the results they give rise to with respect to the task of scale selection, investigated for four different use cases, and with emphasis on the behaviour at fine scales. The results show that the sampled Gaussian kernels and derivatives as well as the integrated Gaussian kernels and derivatives perform very poorly at very fine scales. At very fine scales, the discrete analogue of the Gaussian kernel with its corresponding discrete derivative approximations performs substantially better. The sampled Gaussian kernel and the sampled Gaussian derivatives do, on the other hand, lead to numerically very good approximations of the corresponding continuous results, when the scale parameter is sufficiently large, in the experiments presented in the paper, when the scale parameter is greater than a value of about 1, in units of the grid spacing.
Realizing computationally complex quantum circuits in the presence of noise and imperfections is a challenging task. While fault-tolerant quantum computing provides a route to reducing noise, it requires a large overhead for generic algorithms. Here, we develop and analyze a hardware-efficient, fault-tolerant approach to realizing complex sampling circuits. We co-design the circuits with the appropriate quantum error correcting codes for efficient implementation in a reconfigurable neutral atom array architecture, constituting what we call a fault-tolerant compilation of the sampling algorithm. Specifically, we consider a family of $[[2^D , D, 2]]$ quantum error detecting codes whose transversal and permutation gate set can realize arbitrary degree-$D$ instantaneous quantum polynomial (IQP) circuits. Using native operations of the code and the atom array hardware, we compile a fault-tolerant and fast-scrambling family of such IQP circuits in a hypercube geometry, realized recently in the experiments by Bluvstein et al. [Nature 626, 7997 (2024)]. We develop a theory of second-moment properties of degree-$D$ IQP circuits for analyzing hardness and verification of random sampling by mapping to a statistical mechanics model. We provide evidence that sampling from hypercube IQP circuits is classically hard to simulate and analyze the linear cross-entropy benchmark (XEB) in comparison to the average fidelity. To realize a fully scalable approach, we first show that Bell sampling from degree-$4$ IQP circuits is classically intractable and can be efficiently validated. We further devise new families of $[[O(d^D),D,d]]$ color codes of increasing distance $d$, permitting exponential error suppression for transversal IQP sampling. Our results highlight fault-tolerant compiling as a powerful tool in co-designing algorithms with specific error-correcting codes and realistic hardware.
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