Two-phase sampling designs are frequently employed in epidemiological studies and large-scale health surveys. In such designs, certain variables are exclusively collected within a second-phase random subsample of the initial first-phase sample, often due to factors such as high costs, response burden, or constraints on data collection or measurement assessment. Consequently, second-phase sample estimators can be inefficient due to the diminished sample size. Model-assisted calibration methods have been widely used to improve the efficiency of second-phase estimators. However, none of the existing methods have considered the complexities arising from the intricate sample designs present in both first- and second-phase samples in regression analyses. This paper proposes to calibrate the sample weights for the second-phase subsample to the weighted first-phase sample based on influence functions of regression coefficients for a prediction of the covariate of interest, which can be computed for the entire first-phase sample. We establish the consistency of the proposed calibration estimation and provide variance estimation. Empirical evidence underscores the robustness of calibration on influence functions compared to the imputation method, which can be sensitive to misspecified prediction models for the variable only collected in the second phase. Examples using data from the National Health and Nutrition Examination Survey are provided.
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Spiking neural networks (SNNs), inspired by the spiking behavior of biological neurons, provide a unique pathway for capturing the intricacies of temporal data. However, applying SNNs to time-series forecasting is challenging due to difficulties in effective temporal alignment, complexities in encoding processes, and the absence of standardized guidelines for model selection. In this paper, we propose a framework for SNNs in time-series forecasting tasks, leveraging the efficiency of spiking neurons in processing temporal information. Through a series of experiments, we demonstrate that our proposed SNN-based approaches achieve comparable or superior results to traditional time-series forecasting methods on diverse benchmarks with much less energy consumption. Furthermore, we conduct detailed analysis experiments to assess the SNN's capacity to capture temporal dependencies within time-series data, offering valuable insights into its nuanced strengths and effectiveness in modeling the intricate dynamics of temporal data. Our study contributes to the expanding field of SNNs and offers a promising alternative for time-series forecasting tasks, presenting a pathway for the development of more biologically inspired and temporally aware forecasting models.
Reliable predictions of critical phenomena, such as weather, wildfires and epidemics are often founded on models described by Partial Differential Equations (PDEs). However, simulations that capture the full range of spatio-temporal scales in such PDEs are often prohibitively expensive. Consequently, coarse-grained simulations that employ heuristics and empirical closure terms are frequently utilized as an alternative. We propose a novel and systematic approach for identifying closures in under-resolved PDEs using Multi-Agent Reinforcement Learning (MARL). The MARL formulation incorporates inductive bias and exploits locality by deploying a central policy represented efficiently by Convolutional Neural Networks (CNN). We demonstrate the capabilities and limitations of MARL through numerical solutions of the advection equation and the Burgers' equation. Our results show accurate predictions for in- and out-of-distribution test cases as well as a significant speedup compared to resolving all scales.
Untargeted metabolomics based on liquid chromatography-mass spectrometry technology is quickly gaining widespread application given its ability to depict the global metabolic pattern in biological samples. However, the data is noisy and plagued by the lack of clear identity of data features measured from samples. Multiple potential matchings exist between data features and known metabolites, while the truth can only be one-to-one matches. Some existing methods attempt to reduce the matching uncertainty, but are far from being able to remove the uncertainty for most features. The existence of the uncertainty causes major difficulty in downstream functional analysis. To address these issues, we develop a novel approach for Bayesian Analysis of Untargeted Metabolomics data (BAUM) to integrate previously separate tasks into a single framework, including matching uncertainty inference, metabolite selection, and functional analysis. By incorporating the knowledge graph between variables and using relatively simple assumptions, BAUM can analyze datasets with small sample sizes. By allowing different confidence levels of feature-metabolite matching, the method is applicable to datasets in which feature identities are partially known. Simulation studies demonstrate that, compared with other existing methods, BAUM achieves better accuracy in selecting important metabolites that tend to be functionally consistent and assigning confidence scores to feature-metabolite matches. We analyze a COVID-19 metabolomics dataset and a mouse brain metabolomics dataset using BAUM. Even with a very small sample size of 16 mice per group, BAUM is robust and stable. It finds pathways that conform to existing knowledge, as well as novel pathways that are biologically plausible.
Pretrained language models are commonly aligned with human preferences and downstream tasks via reinforcement finetuning (RFT), which refers to maximizing a (possibly learned) reward function using policy gradient algorithms. This work identifies a fundamental optimization obstacle in RFT: we prove that the expected gradient for an input vanishes when its reward standard deviation under the model is small, even if the expected reward is far from optimal. Through experiments on an RFT benchmark and controlled environments, as well as a theoretical analysis, we then demonstrate that vanishing gradients due to small reward standard deviation are prevalent and detrimental, leading to extremely slow reward maximization. Lastly, we explore ways to overcome vanishing gradients in RFT. We find the common practice of an initial supervised finetuning (SFT) phase to be the most promising candidate, which sheds light on its importance in an RFT pipeline. Moreover, we show that a relatively small number of SFT optimization steps on as few as 1% of the input samples can suffice, indicating that the initial SFT phase need not be expensive in terms of compute and data labeling efforts. Overall, our results emphasize that being mindful for inputs whose expected gradient vanishes, as measured by the reward standard deviation, is crucial for successful execution of RFT.
A number of methods for large-scale agile development have recently been suggested. Much of the advice in agile methods focuses on teamwork. Prior research has established that teamwork quality influences project success both for traditional software development teams and agile teams. Further, prior studies have also suggested that teamwork quality may play out differently in large projects compared to small. We investigated the relationship between teamwork quality and project success with a survey of 196 project participants across 34 teams in four projects, replicating a previous study on single teams. The new data do not fit the previously established theoretical model, which raises several concerns. The observed effect of teamwork quality on project success operates differently across projects. We discuss possible reasons, which include disagreements on what characterises success in large-scale agile development, "concept drift" of teamwork quality factors, the possibility that interteam factors might have more influence on project success than intrateam factors, and finally, that our study design does not capture all relevant levels and functions. We conclude with a call for more studies on the quality and frequency of interaction between teams in addition to internal team factors to further advance theory and practice within large-scale agile software development.
Understanding causality helps to structure interventions to achieve specific goals and enables predictions under interventions. With the growing importance of learning causal relationships, causal discovery tasks have transitioned from using traditional methods to infer potential causal structures from observational data to the field of pattern recognition involved in deep learning. The rapid accumulation of massive data promotes the emergence of causal search methods with brilliant scalability. Existing summaries of causal discovery methods mainly focus on traditional methods based on constraints, scores and FCMs, there is a lack of perfect sorting and elaboration for deep learning-based methods, also lacking some considers and exploration of causal discovery methods from the perspective of variable paradigms. Therefore, we divide the possible causal discovery tasks into three types according to the variable paradigm and give the definitions of the three tasks respectively, define and instantiate the relevant datasets for each task and the final causal model constructed at the same time, then reviews the main existing causal discovery methods for different tasks. Finally, we propose some roadmaps from different perspectives for the current research gaps in the field of causal discovery and point out future research directions.
Deep neural networks (DNNs) are successful in many computer vision tasks. However, the most accurate DNNs require millions of parameters and operations, making them energy, computation and memory intensive. This impedes the deployment of large DNNs in low-power devices with limited compute resources. Recent research improves DNN models by reducing the memory requirement, energy consumption, and number of operations without significantly decreasing the accuracy. This paper surveys the progress of low-power deep learning and computer vision, specifically in regards to inference, and discusses the methods for compacting and accelerating DNN models. The techniques can be divided into four major categories: (1) parameter quantization and pruning, (2) compressed convolutional filters and matrix factorization, (3) network architecture search, and (4) knowledge distillation. We analyze the accuracy, advantages, disadvantages, and potential solutions to the problems with the techniques in each category. We also discuss new evaluation metrics as a guideline for future research.
Many tasks in natural language processing can be viewed as multi-label classification problems. However, most of the existing models are trained with the standard cross-entropy loss function and use a fixed prediction policy (e.g., a threshold of 0.5) for all the labels, which completely ignores the complexity and dependencies among different labels. In this paper, we propose a meta-learning method to capture these complex label dependencies. More specifically, our method utilizes a meta-learner to jointly learn the training policies and prediction policies for different labels. The training policies are then used to train the classifier with the cross-entropy loss function, and the prediction policies are further implemented for prediction. Experimental results on fine-grained entity typing and text classification demonstrate that our proposed method can obtain more accurate multi-label classification results.
Deep convolutional neural networks (CNNs) have recently achieved great success in many visual recognition tasks. However, existing deep neural network models are computationally expensive and memory intensive, hindering their deployment in devices with low memory resources or in applications with strict latency requirements. Therefore, a natural thought is to perform model compression and acceleration in deep networks without significantly decreasing the model performance. During the past few years, tremendous progress has been made in this area. In this paper, we survey the recent advanced techniques for compacting and accelerating CNNs model developed. These techniques are roughly categorized into four schemes: parameter pruning and sharing, low-rank factorization, transferred/compact convolutional filters, and knowledge distillation. Methods of parameter pruning and sharing will be described at the beginning, after that the other techniques will be introduced. For each scheme, we provide insightful analysis regarding the performance, related applications, advantages, and drawbacks etc. Then we will go through a few very recent additional successful methods, for example, dynamic capacity networks and stochastic depths networks. After that, we survey the evaluation matrix, the main datasets used for evaluating the model performance and recent benchmarking efforts. Finally, we conclude this paper, discuss remaining challenges and possible directions on this topic.
Object detection typically assumes that training and test data are drawn from an identical distribution, which, however, does not always hold in practice. Such a distribution mismatch will lead to a significant performance drop. In this work, we aim to improve the cross-domain robustness of object detection. We tackle the domain shift on two levels: 1) the image-level shift, such as image style, illumination, etc, and 2) the instance-level shift, such as object appearance, size, etc. We build our approach based on the recent state-of-the-art Faster R-CNN model, and design two domain adaptation components, on image level and instance level, to reduce the domain discrepancy. The two domain adaptation components are based on H-divergence theory, and are implemented by learning a domain classifier in adversarial training manner. The domain classifiers on different levels are further reinforced with a consistency regularization to learn a domain-invariant region proposal network (RPN) in the Faster R-CNN model. We evaluate our newly proposed approach using multiple datasets including Cityscapes, KITTI, SIM10K, etc. The results demonstrate the effectiveness of our proposed approach for robust object detection in various domain shift scenarios.
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