3D shape reconstruction typically requires identifying object features or textures in multiple images of a subject. This approach is not viable when the subject is semi-transparent and moving in and out of focus. Here we overcome these challenges by rendering a candidate shape with adaptive blurring and transparency for comparison with the images. We use the microscopic nematode Caenorhabditis elegans as a case study as it freely explores a 3D complex fluid with constantly changing optical properties. We model the slender worm as a 3D curve using an intrinsic parametrisation that naturally admits biologically-informed constraints and regularisation. To account for the changing optics we develop a novel differentiable renderer to construct images from 2D projections and compare against raw images to generate a pixel-wise error to jointly update the curve, camera and renderer parameters using gradient descent. The method is robust to interference such as bubbles and dirt trapped in the fluid, stays consistent through complex sequences of postures, recovers reliable estimates from blurry images and provides a significant improvement on previous attempts to track C. elegans in 3D. Our results demonstrate the potential of direct approaches to shape estimation in complex physical environments in the absence of ground-truth data.
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We study a class of orbit recovery problems in which we observe independent copies of an unknown element of $\mathbb{R}^p$, each linearly acted upon by a random element of some group (such as $\mathbb{Z}/p$ or $\mathrm{SO}(3)$) and then corrupted by additive Gaussian noise. We prove matching upper and lower bounds on the number of samples required to approximately recover the group orbit of this unknown element with high probability. These bounds, based on quantitative techniques in invariant theory, give a precise correspondence between the statistical difficulty of the estimation problem and algebraic properties of the group. Furthermore, we give computer-assisted procedures to certify these properties that are computationally efficient in many cases of interest. The model is motivated by geometric problems in signal processing, computer vision, and structural biology, and applies to the reconstruction problem in cryo-electron microscopy (cryo-EM), a problem of significant practical interest. Our results allow us to verify (for a given problem size) that if cryo-EM images are corrupted by noise with variance $\sigma^2$, the number of images required to recover the molecule structure scales as $\sigma^6$. We match this bound with a novel (albeit computationally expensive) algorithm for ab initio reconstruction in cryo-EM, based on invariant features of degree at most 3. We further discuss how to recover multiple molecular structures from mixed (or heterogeneous) cryo-EM samples.
We present Viewset Diffusion: a framework for training image-conditioned 3D generative models from 2D data. Image-conditioned 3D generative models allow us to address the inherent ambiguity in single-view 3D reconstruction. Given one image of an object, there is often more than one possible 3D volume that matches the input image, because a single image never captures all sides of an object. Deterministic models are inherently limited to producing one possible reconstruction and therefore make mistakes in ambiguous settings. Modelling distributions of 3D shapes is challenging because 3D ground truth data is often not available. We propose to solve the issue of data availability by training a diffusion model which jointly denoises a multi-view image set.We constrain the output of Viewset Diffusion models to a single 3D volume per image set, guaranteeing consistent geometry. Training is done through reconstruction losses on renderings, allowing training with only three images per object. Our design of architecture and training scheme allows our model to perform 3D generation and generative, ambiguity-aware single-view reconstruction in a feed-forward manner. Project page: szymanowiczs.github.io/viewset-diffusion.
In this work, we build upon our previous publication and use diffusion-based generative models for speech enhancement. We present a detailed overview of the diffusion process that is based on a stochastic differential equation and delve into an extensive theoretical examination of its implications. Opposed to usual conditional generation tasks, we do not start the reverse process from pure Gaussian noise but from a mixture of noisy speech and Gaussian noise. This matches our forward process which moves from clean speech to noisy speech by including a drift term. We show that this procedure enables using only 30 diffusion steps to generate high-quality clean speech estimates. By adapting the network architecture, we are able to significantly improve the speech enhancement performance, indicating that the network, rather than the formalism, was the main limitation of our original approach. In an extensive cross-dataset evaluation, we show that the improved method can compete with recent discriminative models and achieves better generalization when evaluating on a different corpus than used for training. We complement the results with an instrumental evaluation using real-world noisy recordings and a listening experiment, in which our proposed method is rated best. Examining different sampler configurations for solving the reverse process allows us to balance the performance and computational speed of the proposed method. Moreover, we show that the proposed method is also suitable for dereverberation and thus not limited to additive background noise removal. Code and audio examples are available online, see //github.com/sp-uhh/sgmse
Diffusion models are a class of probabilistic generative models that have been widely used as a prior for image processing tasks like text conditional generation and inpainting. We demonstrate that these models can be adapted to make predictions and provide uncertainty quantification for chaotic dynamical systems. In these applications, diffusion models can implicitly represent knowledge about outliers and extreme events; however, querying that knowledge through conditional sampling or measuring probabilities is surprisingly difficult. Existing methods for conditional sampling at inference time seek mainly to enforce the constraints, which is insufficient to match the statistics of the distribution or compute the probability of the chosen events. To achieve these ends, optimally one would use the conditional score function, but its computation is typically intractable. In this work, we develop a probabilistic approximation scheme for the conditional score function which provably converges to the true distribution as the noise level decreases. With this scheme we are able to sample conditionally on nonlinear userdefined events at inference time, and matches data statistics even when sampling from the tails of the distribution.
The recognition capabilities of current state-of-the-art 3D models are limited by datasets with a small number of annotated data and a pre-defined set of categories. In its 2D counterpart, recent advances have shown that similar problems can be significantly alleviated by employing knowledge from other modalities, such as language. Inspired by this, leveraging multimodal information for 3D modality could be promising to improve 3D understanding under the restricted data regime, but this line of research is not well studied. Therefore, we introduce ULIP to learn a unified representation of images, texts, and 3D point clouds by pre-training with object triplets from the three modalities. To overcome the shortage of training triplets, ULIP leverages a pre-trained vision-language model that has already learned a common visual and textual space by training with massive image-text pairs. Then, ULIP learns a 3D representation space aligned with the common image-text space, using a small number of automatically synthesized triplets. ULIP is agnostic to 3D backbone networks and can easily be integrated into any 3D architecture. Experiments show that ULIP effectively improves the performance of multiple recent 3D backbones by simply pre-training them on ShapeNet55 using our framework, achieving state-of-the-art performance in both standard 3D classification and zero-shot 3D classification on ModelNet40 and ScanObjectNN. ULIP also improves the performance of PointMLP by around 3% in 3D classification on ScanObjectNN, and outperforms PointCLIP by 28.8% on top-1 accuracy for zero-shot 3D classification on ModelNet40. Our code and pre-trained models are released at //github.com/salesforce/ULIP.
Unknown-view tomography (UVT) reconstructs a 3D density map from its 2D projections at unknown, random orientations. A line of work starting with Kam (1980) employs the method of moments (MoM) with rotation-invariant Fourier features to solve UVT in the frequency domain, assuming that the orientations are uniformly distributed. This line of work includes the recent orthogonal matrix retrieval (OMR) approaches based on matrix factorization, which, while elegant, either require side information about the density that is not available, or fail to be sufficiently robust. For OMR to break free from those restrictions, we propose to jointly recover the density map and the orthogonal matrices by requiring that they be mutually consistent. We regularize the resulting non-convex optimization problem by a denoised reference projection and a nonnegativity constraint. This is enabled by the new closed-form expressions for spatial autocorrelation features. Further, we design an easy-to-compute initial density map which effectively mitigates the non-convexity of the reconstruction problem. Experimental results show that the proposed OMR with spatial consensus is more robust and performs significantly better than the previous state-of-the-art OMR approach in the typical low-SNR scenario of 3D UVT.
Recent advances in the field of intelligent robotic manipulation pursue providing robotic hands with touch sensitivity. Haptic perception encompasses the sensing modalities encountered in the sense of touch (e.g., tactile and kinesthetic sensations). This letter focuses on multimodal object recognition and proposes analytical and data-driven methodologies to fuse tactile- and kinesthetic-based classification results. The procedure is as follows: a three-finger actuated gripper with an integrated high-resolution tactile sensor performs squeeze-and-release Exploratory Procedures (EPs). The tactile images and kinesthetic information acquired using angular sensors on the finger joints constitute the time-series datasets of interest. Each temporal dataset is fed to a Long Short-term Memory (LSTM) Neural Network, which is trained to classify in-hand objects. The LSTMs provide an estimation of the posterior probability of each object given the corresponding measurements, which after fusion allows to estimate the object through Bayesian and Neural inference approaches. An experiment with 36-classes is carried out to evaluate and compare the performance of the fused, tactile, and kinesthetic perception systems.The results show that the Bayesian-based classifiers improves capabilities for object recognition and outperforms the Neural-based approach.
This paper introduces a new real and synthetic dataset called NeRFBK specifically designed for testing and comparing NeRF-based 3D reconstruction algorithms. High-quality 3D reconstruction has significant potential in various fields, and advancements in image-based algorithms make it essential to evaluate new advanced techniques. However, gathering diverse data with precise ground truth is challenging and may not encompass all relevant applications. The NeRFBK dataset addresses this issue by providing multi-scale, indoor and outdoor datasets with high-resolution images and videos and camera parameters for testing and comparing NeRF-based algorithms. This paper presents the design and creation of the NeRFBK benchmark, various examples and application scenarios, and highlights its potential for advancing the field of 3D reconstruction.
The concept of causality plays an important role in human cognition . In the past few decades, causal inference has been well developed in many fields, such as computer science, medicine, economics, and education. With the advancement of deep learning techniques, it has been increasingly used in causal inference against counterfactual data. Typically, deep causal models map the characteristics of covariates to a representation space and then design various objective optimization functions to estimate counterfactual data unbiasedly based on the different optimization methods. This paper focuses on the survey of the deep causal models, and its core contributions are as follows: 1) we provide relevant metrics under multiple treatments and continuous-dose treatment; 2) we incorporate a comprehensive overview of deep causal models from both temporal development and method classification perspectives; 3) we assist a detailed and comprehensive classification and analysis of relevant datasets and source code.
Semantic reconstruction of indoor scenes refers to both scene understanding and object reconstruction. Existing works either address one part of this problem or focus on independent objects. In this paper, we bridge the gap between understanding and reconstruction, and propose an end-to-end solution to jointly reconstruct room layout, object bounding boxes and meshes from a single image. Instead of separately resolving scene understanding and object reconstruction, our method builds upon a holistic scene context and proposes a coarse-to-fine hierarchy with three components: 1. room layout with camera pose; 2. 3D object bounding boxes; 3. object meshes. We argue that understanding the context of each component can assist the task of parsing the others, which enables joint understanding and reconstruction. The experiments on the SUN RGB-D and Pix3D datasets demonstrate that our method consistently outperforms existing methods in indoor layout estimation, 3D object detection and mesh reconstruction.
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