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Longitudinal studies, where a series of images from the same set of individuals are acquired at different time-points, represent a popular technique for studying and characterizing temporal dynamics in biomedical applications. The classical approach for longitudinal comparison involves normalizing for nuisance variations, such as image orientation or contrast differences, via pre-processing. Statistical analysis is, in turn, conducted to detect changes of interest, either at the individual or population level. This classical approach can suffer from pre-processing issues and limitations of the statistical modeling. For example, normalizing for nuisance variation might be hard in settings where there are a lot of idiosyncratic changes. In this paper, we present a simple machine learning-based approach that can alleviate these issues. In our approach, we train a deep learning model (called PaIRNet, for Pairwise Image Ranking Network) to compare pairs of longitudinal images, with or without supervision. In the self-supervised setup, for instance, the model is trained to temporally order the images, which requires learning to recognize time-irreversible changes. Our results from four datasets demonstrate that PaIRNet can be very effective in localizing and quantifying meaningful longitudinal changes while discounting nuisance variation. Our code is available at \url{//github.com/heejong-kim/learning-to-compare-longitudinal-images.git}

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Irregular visit times in longitudinal studies can jeopardise marginal regression analyses of longitudinal data by introducing selection bias when the visit and outcome processes are associated. Inverse intensity weighting is a useful approach to addressing such selection bias when the visiting at random assumption is satisfied, i.e., visiting at time $t$ is independent of the longitudinal outcome at $t$, given the observed covariate and outcome histories up to $t$. However, the visiting at random assumption is unverifiable from the observed data, and informative visit times often arise in practice, e.g., when patients' visits to clinics are driven by ongoing disease activities. Therefore, it is necessary to perform sensitivity analyses for inverse intensity weighted estimators (IIWEs) when the visit times are likely informative. However, research on such sensitivity analyses is limited in the literature. In this paper, we propose a new sensitivity analysis approach to accommodating informative visit times in marginal regression analysis of irregular longitudinal data. Our sensitivity analysis is anchored at the visiting at random assumption and can be easily applied to existing IIWEs using standard software such as the coxph function of the R package Survival. Moreover, we develop novel balancing weights estimators of regression coefficients by exactly balancing the covariate distributions that drive the visit and outcome processes to remove the selection bias after weighting. Simulations show that, under both correct and incorrect model specifications, our balancing weights estimators perform better than the existing IIWEs using weights estimated by maximum partial likelihood. We applied our methods to data from a clinic-based cohort study of psoriatic arthritis and provide an R Markdown tutorial to demonstrate their implementation.

Longitudinal Dialogues (LD) are the most challenging type of conversation for human-machine dialogue systems. LDs include the recollections of events, personal thoughts, and emotions specific to each individual in a sparse sequence of dialogue sessions. Dialogue systems designed for LDs should uniquely interact with the users over multiple sessions and long periods of time (e.g. weeks), and engage them in personal dialogues to elaborate on their feelings, thoughts, and real-life events. In this paper, we study the task of response generation in LDs. We evaluate whether general-purpose Pre-trained Language Models (PLM) are appropriate for this purpose. We fine-tune two PLMs, GePpeTto (GPT-2) and iT5, using a dataset of LDs. We experiment with different representations of the personal knowledge extracted from LDs for grounded response generation, including the graph representation of the mentioned events and participants. We evaluate the performance of the models via automatic metrics and the contribution of the knowledge via the Integrated Gradients technique. We categorize the natural language generation errors via human evaluations of contextualization, appropriateness and engagement of the user.

Predicting whether subjects with mild cognitive impairment (MCI) will convert to Alzheimer's disease is a significant clinical challenge. Longitudinal variations and complementary information inherent in longitudinal and multimodal data are crucial for MCI conversion prediction, but persistent issue of missing data in these data may hinder their effective application. Additionally, conversion prediction should be achieved in the early stages of disease progression in clinical practice, specifically at baseline visit (BL). Therefore, longitudinal data should only be incorporated during training to capture disease progression information. To address these challenges, a multi-view imputation and cross-attention network (MCNet) was proposed to integrate data imputation and MCI conversion prediction in a unified framework. First, a multi-view imputation method combined with adversarial learning was presented to handle various missing data scenarios and reduce imputation errors. Second, two cross-attention blocks were introduced to exploit the potential associations in longitudinal and multimodal data. Finally, a multi-task learning model was established for data imputation, longitudinal classification, and conversion prediction tasks. When the model was appropriately trained, the disease progression information learned from longitudinal data can be leveraged by BL data to improve MCI conversion prediction at BL. MCNet was tested on two independent testing sets and single-modal BL data to verify its effectiveness and flexibility in MCI conversion prediction. Results showed that MCNet outperformed several competitive methods. Moreover, the interpretability of MCNet was demonstrated. Thus, our MCNet may be a valuable tool in longitudinal and multimodal data analysis for MCI conversion prediction. Codes are available at //github.com/Meiyan88/MCNET.

There is increasing interest in modeling high-dimensional longitudinal outcomes in applications such as developmental neuroimaging research. Growth curve model offers a useful tool to capture both the mean growth pattern across individuals, as well as the dynamic changes of outcomes over time within each individual. However, when the number of outcomes is large, it becomes challenging and often infeasible to tackle the large covariance matrix of the random effects involved in the model. In this article, we propose a high-dimensional response growth curve model, with three novel components: a low-rank factor model structure that substantially reduces the number of parameters in the large covariance matrix, a re-parameterization formulation coupled with a sparsity penalty that selects important fixed and random effect terms, and a computational trick that turns the inversion of a large matrix into the inversion of a stack of small matrices and thus considerably speeds up the computation. We develop an efficient expectation-maximization type estimation algorithm, and demonstrate the competitive performance of the proposed method through both simulations and a longitudinal study of brain structural connectivity in association with human immunodeficiency virus.

Unmanned aerial vehicles (UAVs) are frequently used for aerial mapping and general monitoring tasks. Recent progress in deep learning enabled automated semantic segmentation of imagery to facilitate the interpretation of large-scale complex environments. Commonly used supervised deep learning for segmentation relies on large amounts of pixel-wise labelled data, which is tedious and costly to annotate. The domain-specific visual appearance of aerial environments often prevents the usage of models pre-trained on publicly available datasets. To address this, we propose a novel general planning framework for UAVs to autonomously acquire informative training images for model re-training. We leverage multiple acquisition functions and fuse them into probabilistic terrain maps. Our framework combines the mapped acquisition function information into the UAV's planning objectives. In this way, the UAV adaptively acquires informative aerial images to be manually labelled for model re-training. Experimental results on real-world data and in a photorealistic simulation show that our framework maximises model performance and drastically reduces labelling efforts. Our map-based planners outperform state-of-the-art local planning.

Denoising diffusion models represent a recent emerging topic in computer vision, demonstrating remarkable results in the area of generative modeling. A diffusion model is a deep generative model that is based on two stages, a forward diffusion stage and a reverse diffusion stage. In the forward diffusion stage, the input data is gradually perturbed over several steps by adding Gaussian noise. In the reverse stage, a model is tasked at recovering the original input data by learning to gradually reverse the diffusion process, step by step. Diffusion models are widely appreciated for the quality and diversity of the generated samples, despite their known computational burdens, i.e. low speeds due to the high number of steps involved during sampling. In this survey, we provide a comprehensive review of articles on denoising diffusion models applied in vision, comprising both theoretical and practical contributions in the field. First, we identify and present three generic diffusion modeling frameworks, which are based on denoising diffusion probabilistic models, noise conditioned score networks, and stochastic differential equations. We further discuss the relations between diffusion models and other deep generative models, including variational auto-encoders, generative adversarial networks, energy-based models, autoregressive models and normalizing flows. Then, we introduce a multi-perspective categorization of diffusion models applied in computer vision. Finally, we illustrate the current limitations of diffusion models and envision some interesting directions for future research.

Recently, Self-Supervised Representation Learning (SSRL) has attracted much attention in the field of computer vision, speech, natural language processing (NLP), and recently, with other types of modalities, including time series from sensors. The popularity of self-supervised learning is driven by the fact that traditional models typically require a huge amount of well-annotated data for training. Acquiring annotated data can be a difficult and costly process. Self-supervised methods have been introduced to improve the efficiency of training data through discriminative pre-training of models using supervisory signals that have been freely obtained from the raw data. Unlike existing reviews of SSRL that have pre-dominately focused upon methods in the fields of CV or NLP for a single modality, we aim to provide the first comprehensive review of multimodal self-supervised learning methods for temporal data. To this end, we 1) provide a comprehensive categorization of existing SSRL methods, 2) introduce a generic pipeline by defining the key components of a SSRL framework, 3) compare existing models in terms of their objective function, network architecture and potential applications, and 4) review existing multimodal techniques in each category and various modalities. Finally, we present existing weaknesses and future opportunities. We believe our work develops a perspective on the requirements of SSRL in domains that utilise multimodal and/or temporal data

Multimodal learning helps to comprehensively understand the world, by integrating different senses. Accordingly, multiple input modalities are expected to boost model performance, but we actually find that they are not fully exploited even when the multimodal model outperforms its uni-modal counterpart. Specifically, in this paper we point out that existing multimodal discriminative models, in which uniform objective is designed for all modalities, could remain under-optimized uni-modal representations, caused by another dominated modality in some scenarios, e.g., sound in blowing wind event, vision in drawing picture event, etc. To alleviate this optimization imbalance, we propose on-the-fly gradient modulation to adaptively control the optimization of each modality, via monitoring the discrepancy of their contribution towards the learning objective. Further, an extra Gaussian noise that changes dynamically is introduced to avoid possible generalization drop caused by gradient modulation. As a result, we achieve considerable improvement over common fusion methods on different multimodal tasks, and this simple strategy can also boost existing multimodal methods, which illustrates its efficacy and versatility. The source code is available at \url{//github.com/GeWu-Lab/OGM-GE_CVPR2022}.

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