Friction drag from a turbulent fluid moving past or inside an object plays a crucial role in domains as diverse as transportation, public utility infrastructure, energy technology, and human health. As a direct measure of the shear-induced friction forces, an accurate prediction of the wall-shear stress can contribute to sustainability, conservation of resources, and carbon neutrality in civil aviation as well as enhanced medical treatment of vascular diseases and cancer. Despite such importance for our modern society, we still lack adequate experimental methods to capture the instantaneous wall-shear stress dynamics. In this contribution, we present a holistic approach that derives velocity and wall-shear stress fields with impressive spatial and temporal resolution from flow measurements using a deep optical flow estimator with physical knowledge. The validity and physical correctness of the derived flow quantities is demonstrated with synthetic and real-world experimental data covering a range of relevant fluid flows.
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In this paper, two novel classes of implicit exponential Runge-Kutta (ERK) methods are studied for solving highly oscillatory systems. First of all, we analyze the symplectic conditions of two kinds of exponential integrators, and present a first-order symplectic method. In order to solve highly oscillatory problems, the highly accurate implicit ERK integrators (up to order four) are formulated by comparing the Taylor expansions of numerical and exact solutions, it is shown that the order conditions of two new kinds of exponential methods are identical to the order conditions of classical Runge-Kutta (RK) methods. Moreover, we investigate the linear stability properties of these exponential methods. Finally, numerical results not only present the long time energy preservation of the first-order symplectic method, but also illustrate the accuracy and efficiency of these formulated methods in comparison with standard ERK methods.
This paper considers a crowdsourced delivery (CSD) system that effectively utilizes the existing trips to fulfill parcel delivery as a matching problem between CSD drivers and delivery tasks. This matching problem has two major challenges. First, it is a large-scale combinatorial optimization problem that is hard to solve in a reasonable computational time. Second, the evaluation of the objective function for socially optimal matching contains the utility of drivers for performing the tasks, which is generally unobservable private information. To address these challenges, this paper proposes a hierarchical distribution mechanism of CSD tasks that decomposes the matching problem into the task partition (master problem) and individual task-driver matching within smaller groups of drivers (sub-problems). We incorporate an auction mechanism with truth-telling and efficiency into the sub-problems so that the drivers' perceived utilities are revealed through their bids. Furthermore, we formulate the master problem as a fluid model based on continuously approximated decision variables. By exploiting the random utility framework, we analytically represent the objective function of the problem using continuous variables, without explicitly knowing the drivers' utilities. The numerical experiment shows that the proposed approach solved large-scale matching problems at least 100 times faster than a naive LP solver and approximated the original objective value with errors of less than 1%.
Multistate Markov models are a canonical parametric approach for data modeling of observed or latent stochastic processes supported on a finite state space. Continuous-time Markov processes describe data that are observed irregularly over time, as is often the case in longitudinal medical data, for example. Assuming that a continuous-time Markov process is time-homogeneous, a closed-form likelihood function can be derived from the Kolmogorov forward equations -- a system of differential equations with a well-known matrix-exponential solution. Unfortunately, however, the forward equations do not admit an analytical solution for continuous-time, time-inhomogeneous Markov processes, and so researchers and practitioners often make the simplifying assumption that the process is piecewise time-homogeneous. In this paper, we provide intuitions and illustrations of the potential biases for parameter estimation that may ensue in the more realistic scenario that the piecewise-homogeneous assumption is violated, and we advocate for a solution for likelihood computation in a truly time-inhomogeneous fashion. Particular focus is afforded to the context of multistate Markov models that allow for state label misclassifications, which applies more broadly to hidden Markov models (HMMs), and Bayesian computations bypass the necessity for computationally demanding numerical gradient approximations for obtaining maximum likelihood estimates (MLEs). Supplemental materials are available online.
Multi-way data extend two-way matrices into higher-dimensional tensors, often explored through dimensional reduction techniques. In this paper, we study the Parallel Factor Analysis (PARAFAC) model for handling multi-way data, representing it more compactly through a concise set of loading matrices and scores. We assume that the data may be incomplete and could contain both rowwise and cellwise outliers, signifying cases that deviate from the majority and outlying cells dispersed throughout the data array. To address these challenges, we present a novel algorithm designed to robustly estimate both loadings and scores. Additionally, we introduce an enhanced outlier map to distinguish various patterns of outlying behavior. Through simulations and the analysis of fluorescence Excitation-Emission Matrix (EEM) data, we demonstrate the robustness of our approach. Our results underscore the effectiveness of diagnostic tools in identifying and interpreting unusual patterns within the data.
In this paper, we introduce a new Bayesian approach for analyzing task fMRI data that simultaneously detects activation signatures and background connectivity. Our modeling involves a new hybrid tensor spatial-temporal basis strategy that enables scalable computing yet captures nearby and distant intervoxel correlation and long-memory temporal correlation. The spatial basis involves a composite hybrid transform with two levels: the first accounts for within-ROI correlation, and second between-ROI distant correlation. We demonstrate in simulations how our basis space regression modeling strategy increases sensitivity for identifying activation signatures, partly driven by the induced background connectivity that itself can be summarized to reveal biological insights. This strategy leads to computationally scalable fully Bayesian inference at the voxel or ROI level that adjusts for multiple testing. We apply this model to Human Connectome Project data to reveal insights into brain activation patterns and background connectivity related to working memory tasks.
A prompt is a sequence of symbol or tokens, selected from a vocabulary according to some rule, which is prepended/concatenated to a textual query. A key problem is how to select the sequence of tokens: in this paper we formulate it as a combinatorial optimization problem. The high dimensionality of the token space com-pounded by the length of the prompt sequence requires a very efficient solution. In this paper we propose a Bayesian optimization method, executed in a continuous em-bedding of the combinatorial space. In this paper we focus on hard prompt tuning (HPT) which directly searches for discrete tokens to be added to the text input with-out requiring access to the large language model (LLM) and can be used also when LLM is available only as a black-box. This is critically important if LLMs are made available in the Model as a Service (MaaS) manner as in GPT-4. The current manu-script is focused on the optimization of discrete prompts for classification tasks. The discrete prompts give rise to difficult combinatorial optimization problem which easily become intractable given the dimension of the token space in realistic applications. The optimization method considered in this paper is Bayesian optimization (BO) which has become the dominant approach in black-box optimization for its sample efficiency along with its modular structure and versatility. In this paper we use BoTorch, a library for Bayesian optimization research built on top of pyTorch. Albeit preliminary and obtained using a 'vanilla' version of BO, the experiments on RoB-ERTa on six benchmarks, show a good performance across a variety of tasks and enable an analysis of the tradeoff between size of the search space, accuracy and wall clock time.
We present ParrotTTS, a modularized text-to-speech synthesis model leveraging disentangled self-supervised speech representations. It can train a multi-speaker variant effectively using transcripts from a single speaker. ParrotTTS adapts to a new language in low resource setup and generalizes to languages not seen while training the self-supervised backbone. Moreover, without training on bilingual or parallel examples, ParrotTTS can transfer voices across languages while preserving the speaker specific characteristics, e.g., synthesizing fluent Hindi speech using a French speaker's voice and accent. We present extensive results in monolingual and multi-lingual scenarios. ParrotTTS outperforms state-of-the-art multi-lingual TTS models using only a fraction of paired data as latter.
The trace plot is seldom used in meta-analysis, yet it is a very informative plot. In this article we define and illustrate what the trace plot is, and discuss why it is important. The Bayesian version of the plot combines the posterior density of tau, the between-study standard deviation, and the shrunken estimates of the study effects as a function of tau. With a small or moderate number of studies, tau is not estimated with much precision, and parameter estimates and shrunken study effect estimates can vary widely depending on the correct value of tau. The trace plot allows visualization of the sensitivity to tau along with a plot that shows which values of tau are plausible and which are implausible. A comparable frequentist or empirical Bayes version provides similar results. The concepts are illustrated using examples in meta-analysis and meta-regression; implementaton in R is facilitated in a Bayesian or frequentist framework using the bayesmeta and metafor packages, respectively.
Many approaches have been proposed to use diffusion models to augment training datasets for downstream tasks, such as classification. However, diffusion models are themselves trained on large datasets, often with noisy annotations, and it remains an open question to which extent these models contribute to downstream classification performance. In particular, it remains unclear if they generalize enough to improve over directly using the additional data of their pre-training process for augmentation. We systematically evaluate a range of existing methods to generate images from diffusion models and study new extensions to assess their benefit for data augmentation. Personalizing diffusion models towards the target data outperforms simpler prompting strategies. However, using the pre-training data of the diffusion model alone, via a simple nearest-neighbor retrieval procedure, leads to even stronger downstream performance. Our study explores the potential of diffusion models in generating new training data, and surprisingly finds that these sophisticated models are not yet able to beat a simple and strong image retrieval baseline on simple downstream vision tasks.
Recent advances in 3D fully convolutional networks (FCN) have made it feasible to produce dense voxel-wise predictions of volumetric images. In this work, we show that a multi-class 3D FCN trained on manually labeled CT scans of several anatomical structures (ranging from the large organs to thin vessels) can achieve competitive segmentation results, while avoiding the need for handcrafting features or training class-specific models. To this end, we propose a two-stage, coarse-to-fine approach that will first use a 3D FCN to roughly define a candidate region, which will then be used as input to a second 3D FCN. This reduces the number of voxels the second FCN has to classify to ~10% and allows it to focus on more detailed segmentation of the organs and vessels. We utilize training and validation sets consisting of 331 clinical CT images and test our models on a completely unseen data collection acquired at a different hospital that includes 150 CT scans, targeting three anatomical organs (liver, spleen, and pancreas). In challenging organs such as the pancreas, our cascaded approach improves the mean Dice score from 68.5 to 82.2%, achieving the highest reported average score on this dataset. We compare with a 2D FCN method on a separate dataset of 240 CT scans with 18 classes and achieve a significantly higher performance in small organs and vessels. Furthermore, we explore fine-tuning our models to different datasets. Our experiments illustrate the promise and robustness of current 3D FCN based semantic segmentation of medical images, achieving state-of-the-art results. Our code and trained models are available for download: //github.com/holgerroth/3Dunet_abdomen_cascade.
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