Recent advancements in language models (LMs) have led to the emergence of powerful models such as Small LMs (e.g., T5) and Large LMs (e.g., GPT-4). These models have demonstrated exceptional capabilities across a wide range of tasks, such as name entity recognition (NER) in the general domain. (We define SLMs as pre-trained models with fewer parameters compared to models like GPT-3/3.5/4, such as T5, BERT, and others.) Nevertheless, their efficacy in the medical section remains uncertain and the performance of medical NER always needs high accuracy because of the particularity of the field. This paper aims to provide a thorough investigation to compare the performance of LMs in medical few-shot NER and answer How far is LMs from 100\% Few-shot NER in Medical Domain, and moreover to explore an effective entity recognizer to help improve the NER performance. Based on our extensive experiments conducted on 16 NER models spanning from 2018 to 2023, our findings clearly indicate that LLMs outperform SLMs in few-shot medical NER tasks, given the presence of suitable examples and appropriate logical frameworks. Despite the overall superiority of LLMs in few-shot medical NER tasks, it is important to note that they still encounter some challenges, such as misidentification, wrong template prediction, etc. Building on previous findings, we introduce a simple and effective method called \textsc{RT} (Retrieving and Thinking), which serves as retrievers, finding relevant examples, and as thinkers, employing a step-by-step reasoning process. Experimental results show that our proposed \textsc{RT} framework significantly outperforms the strong open baselines on the two open medical benchmark datasets
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Creating visually pleasing stylized ink paintings from 3D models is a challenge in robotic manipulation. We propose a semi-automatic framework that can extract expressive strokes from 3D models and draw them in oriental ink painting styles by using a robotic arm. The framework consists of a simulation stage and a robotic drawing stage. In the simulation stage, geometrical contours were automatically extracted from a certain viewpoint and a neural network was employed to create simplified contours. Then, expressive digital strokes were generated after interactive editing according to user's aesthetic understanding. In the robotic drawing stage, an optimization method was presented for drawing smooth and physically consistent strokes to the digital strokes, and two oriental ink painting styles termed as Noutan (shade) and Kasure (scratchiness) were applied to the strokes by robotic control of a brush's translation, dipping and scraping. Unlike existing methods that concentrate on generating paintings from 2D images, our framework has the advantage of rendering stylized ink paintings from 3D models by using a consumer-grade robotic arm. We evaluate the proposed framework by taking 3 standard models and a user-defined model as examples. The results show that our framework is able to draw visually pleasing oriental ink paintings with expressive strokes.
Predictive Network Configuration with Hierarchical Spectral Clustering for Software Defined Vehicles
The increasing connectivity and autonomy of vehicles has led to a growing need for dynamic and real-time adjustments to software and network configurations. Software Defined Vehicles (SDV) have emerged as a potential solution to adapt to changing user needs with continuous updates and onboard reconfigurations to offer infotainment, connected, and background services such as cooperative driving. However, network configuration management in SDVs remains a significant challenge, particularly in the context of shared Ethernet-based in-vehicle networks. Traditional worst-case static configuration methods cannot efficiently allocate network resources while ensuring Quality of Service (QoS) guarantees for each network flow within the physical topology capabilities. In this work, we propose a configuration generation methodology that addresses these limitations by dynamically switching between pre-computed offboard configurations downloaded to the vehicle. Simulation results are presented and future work is discussed.
Adversarial examples (AEs) for DNNs have been shown to be transferable: AEs that successfully fool white-box surrogate models can also deceive other black-box models with different architectures. Although a bunch of empirical studies have provided guidance on generating highly transferable AEs, many of these findings lack explanations and even lead to inconsistent advice. In this paper, we take a further step towards understanding adversarial transferability, with a particular focus on surrogate aspects. Starting from the intriguing little robustness phenomenon, where models adversarially trained with mildly perturbed adversarial samples can serve as better surrogates, we attribute it to a trade-off between two predominant factors: model smoothness and gradient similarity. Our investigations focus on their joint effects, rather than their separate correlations with transferability. Through a series of theoretical and empirical analyses, we conjecture that the data distribution shift in adversarial training explains the degradation of gradient similarity. Building on these insights, we explore the impacts of data augmentation and gradient regularization on transferability and identify that the trade-off generally exists in the various training mechanisms, thus building a comprehensive blueprint for the regulation mechanism behind transferability. Finally, we provide a general route for constructing better surrogates to boost transferability which optimizes both model smoothness and gradient similarity simultaneously, e.g., the combination of input gradient regularization and sharpness-aware minimization (SAM), validated by extensive experiments. In summary, we call for attention to the united impacts of these two factors for launching effective transfer attacks, rather than optimizing one while ignoring the other, and emphasize the crucial role of manipulating surrogate models.
The emergence of vision-language models (VLMs), such as CLIP, has spurred a significant research effort towards their application for downstream supervised learning tasks. Although some previous studies have explored the unsupervised fine-tuning of CLIP, they often rely on prior knowledge in the form of class names associated with ground truth labels. In this paper, we delve into a realistic unsupervised fine-tuning scenario by assuming that the unlabeled data might contain out-of-distribution samples from unknown classes. Furthermore, we emphasize the importance of simultaneously enhancing out-of-distribution detection capabilities alongside the recognition of instances associated with predefined class labels. To tackle this problem, we present a simple, efficient, and effective fine-tuning approach called Universal Entropy Optimization (UEO). UEO leverages sample-level confidence to approximately minimize the conditional entropy of confident instances and maximize the marginal entropy of less confident instances. Apart from optimizing the textual prompts, UEO also incorporates optimization of channel-wise affine transformations within the visual branch of CLIP. Through extensive experiments conducted across 15 domains and 4 different types of prior knowledge, we demonstrate that UEO surpasses baseline methods in terms of both generalization and out-of-distribution detection.
Recently, the advent of vision Transformer (ViT) has brought substantial advancements in 3D dataset benchmarks, particularly in 3D volumetric medical image segmentation (Vol-MedSeg). Concurrently, multi-layer perceptron (MLP) network has regained popularity among researchers due to their comparable results to ViT, albeit with the exclusion of the resource-intensive self-attention module. In this work, we propose a novel permutable hybrid network for Vol-MedSeg, named PHNet, which capitalizes on the strengths of both convolution neural networks (CNNs) and MLP. PHNet addresses the intrinsic isotropy problem of 3D volumetric data by employing a combination of 2D and 3D CNNs to extract local features. Besides, we propose an efficient multi-layer permute perceptron (MLPP) module that captures long-range dependence while preserving positional information. This is achieved through an axis decomposition operation that permutes the input tensor along different axes, thereby enabling the separate encoding of the positional information. Furthermore, MLPP tackles the resolution sensitivity issue of MLP in Vol-MedSeg with a token segmentation operation, which divides the feature into smaller tokens and processes them individually. Extensive experimental results validate that PHNet outperforms the state-of-the-art methods with lower computational costs on the widely-used yet challenging COVID-19-20 and Synapse benchmarks. The ablation study also demonstrates the effectiveness of PHNet in harnessing the strengths of both CNNs and MLP.
Transformer-based pre-trained models like BERT have achieved great progress on Semantic Sentence Matching. Meanwhile, dependency prior knowledge has also shown general benefits in multiple NLP tasks. However, how to efficiently integrate dependency prior structure into pre-trained models to better model complex semantic matching relations is still unsettled. In this paper, we propose the \textbf{D}ependency-Enhanced \textbf{A}daptive \textbf{F}usion \textbf{A}ttention (\textbf{DAFA}), which explicitly introduces dependency structure into pre-trained models and adaptively fuses it with semantic information. Specifically, \textbf{\emph{(i)}} DAFA first proposes a structure-sensitive paradigm to construct a dependency matrix for calibrating attention weights. It adopts an adaptive fusion module to integrate the obtained dependency information and the original semantic signals. Moreover, DAFA reconstructs the attention calculation flow and provides better interpretability. By applying it on BERT, our method achieves state-of-the-art or competitive performance on 10 public datasets, demonstrating the benefits of adaptively fusing dependency structure in semantic matching task.
Diffusion models have exhibited promising progress in video generation. However, they often struggle to retain consistent details within local regions across frames. One underlying cause is that traditional diffusion models approximate Gaussian noise distribution by utilizing predictive noise, without fully accounting for the impact of inherent information within the input itself. Additionally, these models emphasize the distinction between predictions and references, neglecting information intrinsic to the videos. To address this limitation, inspired by the self-attention mechanism, we propose a novel text-to-video (T2V) generation network structure based on diffusion models, dubbed Additional Perturbation for Latent noise with Adversarial training (APLA). Our approach only necessitates a single video as input and builds upon pre-trained stable diffusion networks. Notably, we introduce an additional compact network, known as the Video Generation Transformer (VGT). This auxiliary component is designed to extract perturbations from the inherent information contained within the input, thereby refining inconsistent pixels during temporal predictions. We leverage a hybrid architecture of transformers and convolutions to compensate for temporal intricacies, enhancing consistency between different frames within the video. Experiments demonstrate a noticeable improvement in the consistency of the generated videos both qualitatively and quantitatively.
The dynamics of biomolecules are crucial for our understanding of their functioning in living systems. However, current 3D imaging techniques, such as cryogenic electron microscopy (cryo-EM), require freezing the sample, which limits the observation of their conformational changes in real time. The innovative liquid-phase electron microscopy (liquid-phase EM) technique allows molecules to be placed in the native liquid environment, providing a unique opportunity to observe their dynamics. In this paper, we propose TEMPOR, a Temporal Electron MicroscoPy Object Reconstruction algorithm for liquid-phase EM that leverages an implicit neural representation (INR) and a dynamical variational auto-encoder (DVAE) to recover time series of molecular structures. We demonstrate its advantages in recovering different motion dynamics from two simulated datasets, 7bcq and Cas9. To our knowledge, our work is the first attempt to directly recover 3D structures of a temporally-varying particle from liquid-phase EM movies. It provides a promising new approach for studying molecules' 3D dynamics in structural biology.
With the urgent demand for generalized deep models, many pre-trained big models are proposed, such as BERT, ViT, GPT, etc. Inspired by the success of these models in single domains (like computer vision and natural language processing), the multi-modal pre-trained big models have also drawn more and more attention in recent years. In this work, we give a comprehensive survey of these models and hope this paper could provide new insights and helps fresh researchers to track the most cutting-edge works. Specifically, we firstly introduce the background of multi-modal pre-training by reviewing the conventional deep learning, pre-training works in natural language process, computer vision, and speech. Then, we introduce the task definition, key challenges, and advantages of multi-modal pre-training models (MM-PTMs), and discuss the MM-PTMs with a focus on data, objectives, network architectures, and knowledge enhanced pre-training. After that, we introduce the downstream tasks used for the validation of large-scale MM-PTMs, including generative, classification, and regression tasks. We also give visualization and analysis of the model parameters and results on representative downstream tasks. Finally, we point out possible research directions for this topic that may benefit future works. In addition, we maintain a continuously updated paper list for large-scale pre-trained multi-modal big models: //github.com/wangxiao5791509/MultiModal_BigModels_Survey
Visual Question Answering (VQA) models have struggled with counting objects in natural images so far. We identify a fundamental problem due to soft attention in these models as a cause. To circumvent this problem, we propose a neural network component that allows robust counting from object proposals. Experiments on a toy task show the effectiveness of this component and we obtain state-of-the-art accuracy on the number category of the VQA v2 dataset without negatively affecting other categories, even outperforming ensemble models with our single model. On a difficult balanced pair metric, the component gives a substantial improvement in counting over a strong baseline by 6.6%.
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