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Whole slide image (WSI) assessment is a challenging and crucial step in cancer diagnosis and treatment planning. WSIs require high magnifications to facilitate sub-cellular analysis. Precise annotations for patch- or even pixel-level classifications in the context of gigapixel WSIs are tedious to acquire and require domain experts. Coarse-grained labels, on the other hand, are easily accessible, which makes WSI classification an ideal use case for multiple instance learning (MIL). In our work, we propose a novel embedding-based Dual-Query MIL pipeline (DQ-MIL). We contribute to both the embedding and aggregation steps. Since all-purpose visual feature representations are not yet available, embedding models are currently limited in terms of generalizability. With our work, we explore the potential of dynamic meta-embedding based on cutting-edge self-supervised pre-trained models in the context of MIL. Moreover, we propose a new MIL architecture capable of combining MIL-attention with correlated self-attention. The Dual-Query Perceiver design of our approach allows us to leverage the concept of self-distillation and to combine the advantages of a small model in the context of a low data regime with the rich feature representation of a larger model. We demonstrate the superior performance of our approach on three histopathological datasets, where we show improvement of up to 10% over state-of-the-art approaches.

Supervised learning algorithms based on Convolutional Neural Networks have become the benchmark for medical image segmentation tasks, but their effectiveness heavily relies on a large amount of labeled data. However, annotating medical image datasets is a laborious and time-consuming process. Inspired by semi-supervised algorithms that use both labeled and unlabeled data for training, we propose the PLGDF framework, which builds upon the mean teacher network for segmenting medical images with less annotation. We propose a novel pseudo-label utilization scheme, which combines labeled and unlabeled data to augment the dataset effectively. Additionally, we enforce the consistency between different scales in the decoder module of the segmentation network and propose a loss function suitable for evaluating the consistency. Moreover, we incorporate a sharpening operation on the predicted results, further enhancing the accuracy of the segmentation. Extensive experiments on three publicly available datasets demonstrate that the PLGDF framework can largely improve performance by incorporating the unlabeled data. Meanwhile, our framework yields superior performance compared to six state-of-the-art semi-supervised learning methods. The codes of this study are available at //github.com/ortonwang/PLGDF.

Cross-modal MRI segmentation is of great value for computer-aided medical diagnosis, enabling flexible data acquisition and model generalization. However, most existing methods have difficulty in handling local variations in domain shift and typically require a significant amount of data for training, which hinders their usage in practice. To address these problems, we propose a novel adaptive domain generalization framework, which integrates a learning-free cross-domain representation based on image gradient maps and a class prior-informed test-time adaptation strategy for mitigating local domain shift. We validate our approach on two multi-modal MRI datasets with six cross-modal segmentation tasks. Across all the task settings, our method consistently outperforms competing approaches and shows a stable performance even with limited training data.

Decades of research indicate that emotion recognition is more effective when drawing information from multiple modalities. But what if some modalities are sometimes missing? To address this problem, we propose a novel Transformer-based architecture for recognizing valence and arousal in a time-continuous manner even with missing input modalities. We use a coupling of cross-attention and self-attention mechanisms to emphasize relationships between modalities during time and enhance the learning process on weak salient inputs. Experimental results on the Ulm-TSST dataset show that our model exhibits an improvement of the concordance correlation coefficient evaluation of 37% when predicting arousal values and 30% when predicting valence values, compared to a late-fusion baseline approach.

Objective: Computer-aided disease diagnosis and prognosis based on medical images is a rapidly emerging field. Many Convolutional Neural Network (CNN) architectures have been developed by researchers for disease classification and localization from chest X-ray images. It is known that different thoracic disease lesions are more likely to occur in specific anatomical regions compared to others. This article aims to incorporate this disease and region-dependent prior probability distribution within a deep learning framework. Methods: We present the ThoraX-PriorNet, a novel attention-based CNN model for thoracic disease classification. We first estimate a disease-dependent spatial probability, i.e., an anatomical prior, that indicates the probability of occurrence of a disease in a specific region in a chest X-ray image. Next, we develop a novel attention-based classification model that combines information from the estimated anatomical prior and automatically extracted chest region of interest (ROI) masks to provide attention to the feature maps generated from a deep convolution network. Unlike previous works that utilize various self-attention mechanisms, the proposed method leverages the extracted chest ROI masks along with the probabilistic anatomical prior information, which selects the region of interest for different diseases to provide attention. Results: The proposed method shows superior performance in disease classification on the NIH ChestX-ray14 dataset compared to existing state-of-the-art methods while reaching an area under the ROC curve (%AUC) of 84.67. Regarding disease localization, the anatomy prior attention method shows competitive performance compared to state-of-the-art methods, achieving an accuracy of 0.80, 0.63, 0.49, 0.33, 0.28, 0.21, and 0.04 with an Intersection over Union (IoU) threshold of 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, and 0.7, respectively.

Although image captioning has a vast array of applications, it has not reached its full potential in languages other than English. Arabic, for instance, although the native language of more than 400 million people, remains largely underrepresented in this area. This is due to the lack of labeled data and powerful Arabic generative models. We alleviate this issue by presenting a novel vision-language model dedicated to Arabic, dubbed \textit{Violet}. Our model is based on a vision encoder and a Gemini text decoder that maintains generation fluency while allowing fusion between the vision and language components. To train our model, we introduce a new method for automatically acquiring data from available English datasets. We also manually prepare a new dataset for evaluation. \textit{Violet} performs sizeably better than our baselines on all of our evaluation datasets. For example, it reaches a CIDEr score of $61.2$ on our manually annotated dataset and achieves an improvement of $13$ points on Flickr8k.

The notion of group invariance helps neural networks in recognizing patterns and features under geometric transformations. Indeed, it has been shown that group invariance can largely improve deep learning performances in practice, where such transformations are very common. This research studies affine invariance on continuous-domain convolutional neural networks. Despite other research considering isometric invariance or similarity invariance, we focus on the full structure of affine transforms generated by the generalized linear group $\mathrm{GL}_2(\mathbb{R})$. We introduce a new criterion to assess the similarity of two input signals under affine transformations. Then, unlike conventional methods that involve solving complex optimization problems on the Lie group $G_2$, we analyze the convolution of lifted signals and compute the corresponding integration over $G_2$. In sum, our research could eventually extend the scope of geometrical transformations that practical deep-learning pipelines can handle.

Visual dialogue is a challenging task that needs to extract implicit information from both visual (image) and textual (dialogue history) contexts. Classical approaches pay more attention to the integration of the current question, vision knowledge and text knowledge, despising the heterogeneous semantic gaps between the cross-modal information. In the meantime, the concatenation operation has become de-facto standard to the cross-modal information fusion, which has a limited ability in information retrieval. In this paper, we propose a novel Knowledge-Bridge Graph Network (KBGN) model by using graph to bridge the cross-modal semantic relations between vision and text knowledge in fine granularity, as well as retrieving required knowledge via an adaptive information selection mode. Moreover, the reasoning clues for visual dialogue can be clearly drawn from intra-modal entities and inter-modal bridges. Experimental results on VisDial v1.0 and VisDial-Q datasets demonstrate that our model outperforms exiting models with state-of-the-art results.

Applying artificial intelligence techniques in medical imaging is one of the most promising areas in medicine. However, most of the recent success in this area highly relies on large amounts of carefully annotated data, whereas annotating medical images is a costly process. In this paper, we propose a novel method, called FocalMix, which, to the best of our knowledge, is the first to leverage recent advances in semi-supervised learning (SSL) for 3D medical image detection. We conducted extensive experiments on two widely used datasets for lung nodule detection, LUNA16 and NLST. Results show that our proposed SSL methods can achieve a substantial improvement of up to 17.3% over state-of-the-art supervised learning approaches with 400 unlabeled CT scans.

Image segmentation is considered to be one of the critical tasks in hyperspectral remote sensing image processing. Recently, convolutional neural network (CNN) has established itself as a powerful model in segmentation and classification by demonstrating excellent performances. The use of a graphical model such as a conditional random field (CRF) contributes further in capturing contextual information and thus improving the segmentation performance. In this paper, we propose a method to segment hyperspectral images by considering both spectral and spatial information via a combined framework consisting of CNN and CRF. We use multiple spectral cubes to learn deep features using CNN, and then formulate deep CRF with CNN-based unary and pairwise potential functions to effectively extract the semantic correlations between patches consisting of three-dimensional data cubes. Effective piecewise training is applied in order to avoid the computationally expensive iterative CRF inference. Furthermore, we introduce a deep deconvolution network that improves the segmentation masks. We also introduce a new dataset and experimented our proposed method on it along with several widely adopted benchmark datasets to evaluate the effectiveness of our method. By comparing our results with those from several state-of-the-art models, we show the promising potential of our method.