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Lattices are architected metamaterials whose properties strongly depend on their geometrical design. The analogy between lattices and graphs enables the use of graph neural networks (GNNs) as a faster surrogate model compared to traditional methods such as finite element modelling. In this work, we generate a big dataset of structure-property relationships for strut-based lattices. The dataset is made available to the community which can fuel the development of methods anchored in physical principles for the fitting of fourth-order tensors. In addition, we present a higher-order GNN model trained on this dataset. The key features of the model are (i) SE(3) equivariance, and (ii) consistency with the thermodynamic law of conservation of energy. We compare the model to non-equivariant models based on a number of error metrics and demonstrate its benefits in terms of predictive performance and reduced training requirements. Finally, we demonstrate an example application of the model to an architected material design task. The methods which we developed are applicable to fourth-order tensors beyond elasticity such as piezo-optical tensor etc.

In sound event detection (SED), convolution neural networks (CNNs) are widely used to extract time-frequency patterns from the input spectrogram. However, features extracted by CNN can be insensitive to the shift of time-frequency patterns along the frequency axis. To address this issue, frequency dynamic convolution (FDY) has been proposed, which applies different kernels to different frequency components. Compared to the vannila CNN, FDY requires several times more parameters. In this paper, a more efficient solution named frequency-aware convolution (FAC) is proposed. In FAC, frequency-positional information is encoded in a vector and added to the input spectrogram. To match the amplitude of input, the encoding vector is scaled adaptively and channel-independently. Experiments are carried out in the context of DCASE 2022 task 4, and the results demonstrate that FAC can achieve comparable performance to that of FDY with only 515 additional parameters, while FDY requires 8.02 million additional parameters. The ablation study shows that scaling the encoding vector adaptively and channel-independently is critical to the performance of FAC.

Image information is restricted by the dynamic range of the detector, which can be addressed using multi-exposure image fusion (MEF). The conventional MEF approach employed in ptychography is often inadequate under conditions of low signal-to-noise ratio (SNR) or variations in illumination intensity. To address this, we developed a Bayesian approach for MEF based on a modified Poisson noise model that considers the background and saturation. Our method outperforms conventional MEF under challenging experimental conditions, as demonstrated by the synthetic and experimental data. Furthermore, this method is versatile and applicable to any imaging scheme requiring high dynamic range (HDR).

We introduce efficient algorithms for approximate sampling from symmetric Gibbs distributions on the sparse random (hyper)graph. The examples we consider include (but are not restricted to) important distributions on spin systems and spin-glasses such as the q state antiferromagnetic Potts model for $q\geq 2$, including the colourings, the uniform distributions over the Not-All-Equal solutions of random k-CNF formulas. Finally, we present an algorithm for sampling from the spin-glass distribution called the k-spin model. To our knowledge this is the first, rigorously analysed, efficient algorithm for spin-glasses which operates in a non trivial range of the parameters. Our approach builds on the one that was introduced in [Efthymiou: SODA 2012]. For a symmetric Gibbs distribution $\mu$ on a random (hyper)graph whose parameters are within an certain range, our algorithm has the following properties: with probability $1-o(1)$ over the input instances, it generates a configuration which is distributed within total variation distance $n^{-\Omega(1)}$ from $\mu$. The time complexity is $O((n\log n)^2)$. The algorithm requires a range of the parameters which, for the graph case, coincide with the tree-uniqueness region, parametrised w.r.t. the expected degree d. For the hypergraph case, where uniqueness is less restrictive, we go beyond uniqueness. Our approach utilises in a novel way the notion of contiguity between Gibbs distributions and the so-called teacher-student model.

Mendelian randomization uses genetic variants as instrumental variables to make causal inferences about the effects of modifiable risk factors on diseases from observational data. One of the major challenges in Mendelian randomization is that many genetic variants are only modestly or even weakly associated with the risk factor of interest, a setting known as many weak instruments. Many existing methods, such as the popular inverse-variance weighted (IVW) method, could be biased when the instrument strength is weak. To address this issue, the debiased IVW (dIVW) estimator, which is shown to be robust to many weak instruments, was recently proposed. However, this estimator still has non-ignorable bias when the effective sample size is small. In this paper, we propose a modified debiased IVW (mdIVW) estimator by multiplying a modification factor to the original dIVW estimator. After this simple correction, we show that the bias of the mdIVW estimator converges to zero at a faster rate than that of the dIVW estimator under some regularity conditions. Moreover, the mdIVW estimator has smaller variance than the dIVW estimator.We further extend the proposed method to account for the presence of instrumental variable selection and balanced horizontal pleiotropy. We demonstrate the improvement of the mdIVW estimator over the dIVW estimator through extensive simulation studies and real data analysis.

Within network data analysis, bipartite networks represent a particular type of network where relationships occur between two disjoint sets of nodes, formally called sending and receiving nodes. In this context, sending nodes may be organized into layers on the basis of some defined characteristics, resulting in a special case of multilayer bipartite network, where each layer includes a specific set of sending nodes. To perform a clustering of sending nodes in multi-layer bipartite network, we extend the Mixture of Latent Trait Analyzers (MLTA), also taking into account the influence of concomitant variables on clustering formation and the multi-layer structure of the data. To this aim, a multilevel approach offers a useful methodological tool to properly account for the hierarchical structure of the data and for the unobserved sources of heterogeneity at multiple levels. A simulation study is conducted to test the performance of the proposal in terms of parameters' and clustering recovery. Furthermore, the model is applied to the European Social Survey data (ESS) to i) perform a clustering of individuals (sending nodes) based on their digital skills (receiving nodes); ii) understand how socio-economic and demographic characteristics influence the individual digitalization level; iii) account for the multilevel structure of the data; iv) obtain a clustering of countries in terms of the base-line attitude to digital technologies of their residents.

We propose a new Riemannian gradient descent method for computing spherical area-preserving mappings of topological spheres using a Riemannian retraction-based framework with theoretically guaranteed convergence. The objective function is based on the stretch energy functional, and the minimization is constrained on a power manifold of unit spheres embedded in 3-dimensional Euclidean space. Numerical experiments on several mesh models demonstrate the accuracy and stability of the proposed framework. Comparisons with two existing state-of-the-art methods for computing area-preserving mappings demonstrate that our algorithm is both competitive and more efficient. Finally, we present a concrete application to the problem of landmark-aligned surface registration of two brain models.

We present a physics-informed neural network (PINN) approach for the discovery of slow invariant manifolds (SIMs), for the most general class of fast/slow dynamical systems of ODEs. In contrast to other machine learning (ML) approaches that construct reduced order black box surrogate models using simple regression, and/or require a priori knowledge of the fast and slow variables, our approach, simultaneously decomposes the vector field into fast and slow components and provides a functional of the underlying SIM in a closed form. The decomposition is achieved by finding a transformation of the state variables to the fast and slow ones, which enables the derivation of an explicit, in terms of fast variables, SIM functional. The latter is obtained by solving a PDE corresponding to the invariance equation within the Geometric Singular Perturbation Theory (GSPT) using a single-layer feedforward neural network with symbolic differentiation. The performance of the proposed physics-informed ML framework is assessed via three benchmark problems: the Michaelis-Menten, the target mediated drug disposition (TMDD) reaction model and a fully competitive substrate-inhibitor(fCSI) mechanism. We also provide a comparison with other GPST methods, namely the quasi steady state approximation (QSSA), the partial equilibrium approximation (PEA) and CSP with one and two iterations. We show that the proposed PINN scheme provides SIM approximations, of equivalent or even higher accuracy, than those provided by QSSA, PEA and CSP, especially close to the boundaries of the underlying SIMs.

Image information is restricted by the dynamic range of the detector, which can be addressed using multi-exposure image fusion (MEF). The conventional MEF approach employed in ptychography is often inadequate under conditions of low signal-to-noise ratio (SNR) or variations in illumination intensity. To address this, we developed a Bayesian approach for MEF based on a modified Poisson noise model that considers the background and saturation. Our method outperforms conventional MEF under challenging experimental conditions, as demonstrated by the synthetic and experimental data. Furthermore, this method is versatile and applicable to any imaging scheme requiring high dynamic range (HDR).

Recent advances in large language models have demonstrated their potential for automated generation of hardware description language (HDL) code from high-level prompts. Researchers have utilized fine-tuning to enhance the ability of these large language models (LLMs) in the field of Chip Design. However, the lack of Verilog data hinders further improvement in the quality of Verilog generation by LLMs. Additionally, the absence of a Verilog and Electronic Design Automation (EDA) script data augmentation framework significantly increases the time required to prepare the training dataset for LLM trainers. This paper proposes an automated design-data augmentation framework, which generates high-volume and high-quality natural language aligned with Verilog and EDA scripts. For Verilog generation, it translates Verilog files to an abstract syntax tree and then maps nodes to natural language with a predefined template. For Verilog repair, it uses predefined rules to generate the wrong verilog file and then pairs EDA Tool feedback with the right and wrong verilog file. For EDA Script generation, it uses existing LLM(GPT-3.5) to obtain the description of the Script. To evaluate the effectiveness of our data augmentation method, we finetune Llama2-13B and Llama2-7B models using the dataset generated by our augmentation framework. The results demonstrate a significant improvement in the Verilog generation tasks with LLMs. Moreover, the accuracy of Verilog generation surpasses that of the current state-of-the-art open-source Verilog generation model, increasing from 58.8% to 70.6% with the same benchmark. Our 13B model (ChipGPT-FT) has a pass rate improvement compared with GPT-3.5 in Verilog generation and outperforms in EDA script (i.e., SiliconCompiler) generation with only 200 EDA script data.