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Echocardiography (ECHO) is essential for cardiac assessments, but its video quality and interpretation heavily relies on manual expertise, leading to inconsistent results from clinical and portable devices. ECHO video generation offers a solution by improving automated monitoring through synthetic data and generating high-quality videos from routine health data. However, existing models often face high computational costs, slow inference, and rely on complex conditional prompts that require experts' annotations. To address these challenges, we propose ECHOPULSE, an ECG-conditioned ECHO video generation model. ECHOPULSE introduces two key advancements: (1) it accelerates ECHO video generation by leveraging VQ-VAE tokenization and masked visual token modeling for fast decoding, and (2) it conditions on readily accessible ECG signals, which are highly coherent with ECHO videos, bypassing complex conditional prompts. To the best of our knowledge, this is the first work to use time-series prompts like ECG signals for ECHO video generation. ECHOPULSE not only enables controllable synthetic ECHO data generation but also provides updated cardiac function information for disease monitoring and prediction beyond ECG alone. Evaluations on three public and private datasets demonstrate state-of-the-art performance in ECHO video generation across both qualitative and quantitative measures. Additionally, ECHOPULSE can be easily generalized to other modality generation tasks, such as cardiac MRI, fMRI, and 3D CT generation. Demo can seen from \url{//github.com/levyisthebest/ECHOPulse_Prelease}.

We address the problem of extending a pretrained large language model to a new domain that was not seen at training time, like adding a language for which the original model has seen no or little training data. Popular solutions like fine-tuning or low-rank adaptation are successful at domain adaptation, but formally they do not add any extra capacity and degrade the performance in the original domain. Our paper analyzes this extension problem under three angles: data, architecture and training procedure, which are advantageously considered jointly. In particular, we improve adapters and make it possible to learn an entire new language while ensuring that the output of the neural network is almost unchanged in the original domain. For this purpose, we modify the new residual blocks in a way that leads each new residual block to output near-zeros in the original domain. This solution of neutral residues, which borrows architectural components from mixture of experts, is effective: with only 20% extra learnable weights compared to an original model trained on English, we get results that are significantly better than concurrent approaches (fine-tuning, low-rank or vanilla adapters) in terms of the trade-off between learning a new language and not forgetting English.

In Intensive Care Units (ICU), the abundance of multivariate time series presents an opportunity for machine learning (ML) to enhance patient phenotyping. In contrast to previous research focused on electronic health records (EHR), here we propose an ML approach for phenotyping using routinely collected physiological time series data. Our new algorithm integrates Long Short-Term Memory (LSTM) networks with collaborative filtering concepts to identify common physiological states across patients. Tested on real-world ICU clinical data for intracranial hypertension (IH) detection in patients with brain injury, our method achieved an area under the curve (AUC) of 0.889 and average precision (AP) of 0.725. Moreover, our algorithm outperforms autoencoders in learning more structured latent representations of the physiological signals. These findings highlight the promise of our methodology for patient phenotyping, leveraging routinely collected multivariate time series to improve clinical care practices.

Uniform expressivity guarantees that a Graph Neural Network (GNN) can express a query without the parameters depending on the size of the input graphs. This property is desirable in applications in order to have number of trainable parameters that is independent of the size of the input graphs. Uniform expressivity of the two variable guarded fragment (GC2) of first order logic is a well-celebrated result for Rectified Linear Unit (ReLU) GNNs [Barcelo & al., 2020]. In this article, we prove that uniform expressivity of GC2 queries is not possible for GNNs with a wide class of Pfaffian activation functions (including the sigmoid and tanh), answering a question formulated by [Grohe, 2021]. We also show that despite these limitations, many of those GNNs can still efficiently express GC2 queries in a way that the number of parameters remains logarithmic on the maximal degree of the input graphs. Furthermore, we demonstrate that a log-log dependency on the degree is achievable for a certain choice of activation function. This shows that uniform expressivity can be successfully relaxed by covering large graphs appearing in practical applications. Our experiments illustrates that our theoretical estimates hold in practice.

Despite that the segment anything model (SAM) achieved impressive results on general-purpose semantic segmentation with strong generalization ability on daily images, its demonstrated performance on medical image segmentation is less precise and not stable, especially when dealing with tumor segmentation tasks that involve objects of small sizes, irregular shapes, and low contrast. Notably, the original SAM architecture is designed for 2D natural images, therefore would not be able to extract the 3D spatial information from volumetric medical data effectively. In this paper, we propose a novel adaptation method for transferring SAM from 2D to 3D for promptable medical image segmentation. Through a holistically designed scheme for architecture modification, we transfer the SAM to support volumetric inputs while retaining the majority of its pre-trained parameters for reuse. The fine-tuning process is conducted in a parameter-efficient manner, wherein most of the pre-trained parameters remain frozen, and only a few lightweight spatial adapters are introduced and tuned. Regardless of the domain gap between natural and medical data and the disparity in the spatial arrangement between 2D and 3D, the transformer trained on natural images can effectively capture the spatial patterns present in volumetric medical images with only lightweight adaptations. We conduct experiments on four open-source tumor segmentation datasets, and with a single click prompt, our model can outperform domain state-of-the-art medical image segmentation models on 3 out of 4 tasks, specifically by 8.25%, 29.87%, and 10.11% for kidney tumor, pancreas tumor, colon cancer segmentation, and achieve similar performance for liver tumor segmentation. We also compare our adaptation method with existing popular adapters, and observed significant performance improvement on most datasets.

The various limitations of Generative AI, such as hallucinations and model failures, have made it crucial to understand the role of different modalities in Visual Language Model (VLM) predictions. Our work investigates how the integration of information from image and text modalities influences the performance and behavior of VLMs in visual question answering (VQA) and reasoning tasks. We measure this effect through answer accuracy, reasoning quality, model uncertainty, and modality relevance. We study the interplay between text and image modalities in different configurations where visual content is essential for solving the VQA task. Our contributions include (1) the Semantic Interventions (SI)-VQA dataset, (2) a benchmark study of various VLM architectures under different modality configurations, and (3) the Interactive Semantic Interventions (ISI) tool. The SI-VQA dataset serves as the foundation for the benchmark, while the ISI tool provides an interface to test and apply semantic interventions in image and text inputs, enabling more fine-grained analysis. Our results show that complementary information between modalities improves answer and reasoning quality, while contradictory information harms model performance and confidence. Image text annotations have minimal impact on accuracy and uncertainty, slightly increasing image relevance. Attention analysis confirms the dominant role of image inputs over text in VQA tasks. In this study, we evaluate state-of-the-art VLMs that allow us to extract attention coefficients for each modality. A key finding is PaliGemma's harmful overconfidence, which poses a higher risk of silent failures compared to the LLaVA models. This work sets the foundation for rigorous analysis of modality integration, supported by datasets specifically designed for this purpose.

This work presents GALAEXI as a novel, energy-efficient flow solver for the simulation of compressible flows on unstructured meshes leveraging the parallel computing power of modern Graphics Processing Units (GPUs). GALAEXI implements the high-order Discontinuous Galerkin Spectral Element Method (DGSEM) using shock capturing with a finite-volume subcell approach to ensure the stability of the high-order scheme near shocks. This work provides details on the general code design, the parallelization strategy, and the implementation approach for the compute kernels with a focus on the element local mappings between volume and surface data due to the unstructured mesh. GALAEXI exhibits excellent strong scaling properties up to 1024 GPUs if each GPU is assigned a minimum of one million degrees of freedom degrees of freedom. To verify its implementation, a convergence study is performed that recovers the theoretical order of convergence of the implemented numerical schemes. Moreover, the solver is validated using both the incompressible and compressible formulation of the Taylor-Green-Vortex at a Mach number of 0.1 and 1.25, respectively. A mesh convergence study shows that the results converge to the high-fidelity reference solution and that the results match the original CPU implementation. Finally, GALAEXI is applied to a large-scale wall-resolved large eddy simulation of a linear cascade of the NASA Rotor 37. Here, the supersonic region and shocks at the leading edge are captured accurately and robustly by the implemented shock-capturing approach. It is demonstrated that GALAEXI requires less than half of the energy to carry out this simulation in comparison to the reference CPU implementation. This renders GALAEXI as a potent tool for accurate and efficient simulations of compressible flows in the realm of exascale computing and the associated new HPC architectures.

We introduce GPTreeO, a flexible R package for scalable Gaussian process (GP) regression, particularly tailored to continual learning problems. GPTreeO builds upon the Dividing Local Gaussian Processes (DLGP) algorithm, in which a binary tree of local GP regressors is dynamically constructed using a continual stream of input data. In GPTreeO we extend the original DLGP algorithm by allowing continual optimisation of the GP hyperparameters, incorporating uncertainty calibration, and introducing new strategies for how the local partitions are created. Moreover, the modular code structure allows users to interface their favourite GP library to perform the local GP regression in GPTreeO. The flexibility of GPTreeO gives the user fine-grained control of the balance between computational speed, accuracy, stability and smoothness. We conduct a sensitivity analysis to show how GPTreeO's configurable features impact the regression performance in a continual learning setting.

Social-media platforms are one of the most prevalent communication media today. In such systems, a large amount of content is generated and available to the platform. However, not all content can be transmitted to every possible user at all times. At the other end are the users, who have their own preferences about which content they enjoy, which is often unknown ex ante to the platform. We model the interaction between the platform and the users as a signaling game with asymmetric information, where each user optimizes its preference disclosure policy, and the platform optimizes its information disclosure policy. We provide structural as well as existence of policies that constitute Bayesian Nash Equilibria, and necessary optimality conditions used to explicitly compute the optimal policies.

Nowadays, the Convolutional Neural Networks (CNNs) have achieved impressive performance on many computer vision related tasks, such as object detection, image recognition, image retrieval, etc. These achievements benefit from the CNNs outstanding capability to learn the input features with deep layers of neuron structures and iterative training process. However, these learned features are hard to identify and interpret from a human vision perspective, causing a lack of understanding of the CNNs internal working mechanism. To improve the CNN interpretability, the CNN visualization is well utilized as a qualitative analysis method, which translates the internal features into visually perceptible patterns. And many CNN visualization works have been proposed in the literature to interpret the CNN in perspectives of network structure, operation, and semantic concept. In this paper, we expect to provide a comprehensive survey of several representative CNN visualization methods, including Activation Maximization, Network Inversion, Deconvolutional Neural Networks (DeconvNet), and Network Dissection based visualization. These methods are presented in terms of motivations, algorithms, and experiment results. Based on these visualization methods, we also discuss their practical applications to demonstrate the significance of the CNN interpretability in areas of network design, optimization, security enhancement, etc.